2024-04-29 12:50:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_174479 3672 bp RNA linear ROD 07-AUG-2023 DEFINITION Mus musculus RAS protein activator like 3 (Rasal3), transcript variant 6, non-coding RNA. ACCESSION NR_174479 VERSION NR_174479.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3672) AUTHORS Saito S, Cao DY, Victor AR, Peng Z, Wu HY and Okwan-Duodu D. TITLE RASAL3 Is a Putative RasGAP Modulating Inflammatory Response by Neutrophils JOURNAL Front Immunol 12, 744300 (2021) PUBMED 34777356 REMARK GeneRIF: RASAL3 Is a Putative RasGAP Modulating Inflammatory Response by Neutrophils. Publication Status: Online-Only REFERENCE 2 (bases 1 to 3672) AUTHORS Muro R, Nitta T, Kitajima M, Okada T and Suzuki H. TITLE Rasal3-mediated T cell survival is essential for inflammatory responses JOURNAL Biochem Biophys Res Commun 496 (1), 25-30 (2018) PUBMED 29291408 REMARK GeneRIF: Collectively, Rasal3 controls the magnitude of inflammatory responses through the survival of both naive T cells and activated T cells in vivo. REFERENCE 3 (bases 1 to 3672) AUTHORS Saito S, Kawamura T, Higuchi M, Kobayashi T, Yoshita-Takahashi M, Yamazaki M, Abe M, Sakimura K, Kanda Y, Kawamura H, Jiang S, Naito M, Yoshizaki T, Takahashi M and Fujii M. TITLE RASAL3, a novel hematopoietic RasGAP protein, regulates the number and functions of NKT cells JOURNAL Eur J Immunol 45 (5), 1512-1523 (2015) PUBMED 25652366 REMARK GeneRIF: results suggest that RASAL3 plays an important role in the expansion and functions of NKT cells in the liver by negatively regulating Ras/Erk signaling REFERENCE 4 (bases 1 to 3672) AUTHORS Muro R, Nitta T, Okada T, Ideta H, Tsubata T and Suzuki H. TITLE The Ras GTPase-activating protein Rasal3 supports survival of naive T cells JOURNAL PLoS One 10 (3), e0119898 (2015) PUBMED 25793935 REMARK GeneRIF: Rasal3 is required for in vivo survival of peripheral naive T cells, contributing to the maintenance of optimal T cell numbers. Publication Status: Online-Only REFERENCE 5 (bases 1 to 3672) AUTHORS Yu X, Bauer K, Koczan D, Thiesen HJ and Ibrahim SM. TITLE Combining global genome and transcriptome approaches to identify the candidate genes of small-effect quantitative trait loci in collagen-induced arthritis JOURNAL Arthritis Res Ther 9 (1), R3 (2007) PUBMED 17244351 REFERENCE 6 (bases 1 to 3672) AUTHORS Okazaki N, Kikuno R, Ohara R, Inamoto S, Koseki H, Hiraoka S, Saga Y, Kitamura H, Nakagawa T, Nagase T, Ohara O and Koga H. TITLE Prediction of the coding sequences of mouse homologues of FLJ genes: the complete nucleotide sequences of 110 mouse FLJ-homologous cDnas identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries JOURNAL DNA Res 11 (2), 127-135 (2004) PUBMED 15449545 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CT485616.11. ##Evidence-Data-START## RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-526 CT485616.11 25328-25853 c 527-666 CT485616.11 21562-21701 c 667-745 CT485616.11 21357-21435 c 746-807 CT485616.11 21189-21250 c 808-875 CT485616.11 20293-20360 c 876-1002 CT485616.11 19766-19892 c 1003-1101 CT485616.11 19582-19680 c 1102-1638 CT485616.11 18620-19156 c 1639-1783 CT485616.11 18094-18238 c 1784-1928 CT485616.11 17347-17491 c 1929-2165 CT485616.11 16310-16546 c 2166-2367 CT485616.11 16013-16214 c 2368-2486 CT485616.11 15795-15913 c 2487-2877 CT485616.11 14670-15060 c 2878-3031 CT485616.11 14318-14471 c 3032-3095 CT485616.11 13608-13671 c 3096-3672 CT485616.11 12931-13507 c FEATURES Location/Qualifiers source 1..3672 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="17" /map="17 17.55 cM" gene 1..3672 /gene="Rasal3" /gene_synonym="A430107D22Rik" /note="RAS protein activator like 3" /db_xref="GeneID:320484" /db_xref="MGI:MGI:2444128" misc_RNA 1..3672 /gene="Rasal3" /gene_synonym="A430107D22Rik" /product="RAS protein activator like 3, transcript variant 6" /db_xref="GeneID:320484" /db_xref="MGI:MGI:2444128" exon 1..526 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" misc_feature 133..2949 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_001400382.1" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 527..666 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 667..745 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 746..807 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 808..875 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 876..1002 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 1003..1101 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 1102..1638 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 1639..1783 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 1784..1928 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 1929..2165 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2166..2367 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2368..2486 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2487..2877 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2878..3031 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 3032..3095 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 3096..3672 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gaggaaggaagctaggcacagtacagacggctgctggttctggactggccaggaaatcaaggtaagggagggtgtacgtgtggcatcctcaagtatgttcctggaggcgaagctgagaagagaccagggaagatgaagccagaatgtgggcagacaatgttcagaaccttttggtctcgcagcagagactcctccgccatggacccaccgttgcagagtgaagaagattcccaaacgcagccctcgctgccctctccgctgacatcctaccgctggcacactggaggcagtggggaaaaggctgctggagggttccgctggggccgctttgcaggctggggaagggccctgagccatcaggagcccatggtgaacagccagccagcccccagatctctgtttcgtcgggtcctctctgcaccccctaaggagtcacggtccaatcgcctccggttttccaagaccctgtggggaaggcacaagaacgtggcaccactggaacccaagccaaatccgaaggccccagagccagagctggagttggtagcagacccagatctacccgttgcacagatccctgagcctcccaccccggacatgcctgtttggaacattgatggctttacccttctcgaaggaaagctggtgatgctcggtgaggaggagggtcctcgccaaatccgagtgggaagcgccagttcagagaacagcatgcaggcagctttggggaacctcaaggatgcagttcggacccctggaaaaactgagccggaagctgctggttccaaccaggtccacaatgttcggttactcaagaggctgaaggagaagaaaagagccaagtcagaactgggagcctacacccctcgagatggacctcccagtgccctcggttccagagaatcgctggccacactctctgagctggacctaggtgctgagagggacgtgagagtctggccactgcatcctagcctcttgggggagccctactgcttccaggtaacctgggcaggtgggagcctctgtttctcatgtcgctcgagcgctgagagagaccgttggattgaggaccttcgtcggcagttccagccgagccaggacaacgtggagcggcaagagatgtggctgacggtgtgggtgcacgaggccaaagggctaccccgagcaactgtacccggagtgcgtgcggagctgtggttggatggcgcgctattggcgcgcactgccccccgtgccggcccaggccaactcttctgggctgaacgcttccacttcgaggcgttgccacctgcccgtcgcctgtcgctgcggttgcgcagcgcaggcccggcaggggcaaccgtgggcagggtggtgctggagctggacgaggtgagcatcccccgcgcgcctgccgcgggcctagagcgctggttcccggtgcttggggcgccggcaggtgcggtgctacgagcgcggatcagggtgcgttgtctgcgcgtgctgccgtcggagcgctataaggagctggccgagttcctcaccttccactacgcgcgcctgtgcggggcgctggagccggcgctgtctgctcaggccaaagaggagctggcagcagccatggtgcgcgtgctacgagccactggccgagcgcaggcattggtgacagacctaggaaccgcagagctggcacgctgtggaggccgtgaagcactgctattccgagaaaataccttagccacaaaggccattgatgaatacatgaaactggtggcacaggagtacctccaggacaccctggggcaggttgtgcggtgtctctgtgcctccactgaggactgtgaagtggaccccagcaagtgcccaacaccagagctgccaaaacaccaagctagactgcgagacagctgtgaggaggtttttgaaaacatcatccattcttacaactgtttcccagcagagctgggctccgtgttctcaagttggcgtgaagcatgcaaagcacgaggctctgaggccctgggcccccggctggtgtgtgcttccctcttcctgaggcttttatgccctgccatcttggcacctagcctctttggcctggcaccagagcacccagccccaggcccagccagaactcttacactcatcgccaaggtcatccagaacctcgccaactgtgccccgtttggtgagaaggaagcctacatggcgtttatgaatagcttcctggaagatcatggaccagccatgcaacacttcctggaccaggtagctacggtggatgcagataccacacccagtggctaccagggaagtggagacctggcccttcagttagcagttcttcatgtccagctctgcacaatctttgccgaacttgaccagaaaacccaagatagcttggaaccactacccaccatccttcgagccattgaggaaggccggcctgtcccagtgtctgtaccaatgcgtcttccccggatctccactcaggtccaatccagcttcttttcaggggagaaacccggcttcctggcaccccgagacctccccaagcacactcccctcatttccaagagtcaatctctgcgcagctttcaaggggcaggaagctgggccagtcggcggccagatgaggagcggccccagaggcggccgcggccagtgctgcgcacacagagcgtccctgccagacgtcctacccaccgtcgcccttctgcaggttccaagccgcggcccaaaggctccctacgcatgggccccgcgccttgcggacgggcctggactagggcttctgcctcgctacctcggaagccatcggtaccatggcagcgccaaatggaccagccgggggaccgataccaaactacgggaacgcaccgaccagtgggcaagcagagatacaatgtgaggtggctatattccgcgaggcacagaaagctctgtcccttctggtggagtcgttgagtacccaagtccaagccttgaaggagcagcaggagcacttccgctgtcagctgcaggatctgtactccagactgggagctggtatctcaaagttggattctaagggtggtctcccaagcaacggaagccacaggctgaaaagtctggaacagcgcctgactgagatggaatgttctcaggaccagctgagggatagcctccaaagcctgcaacttctttcaaaaacaccaggatctcggagccagcccctgcctctcaaagcaccatgtgtcaatggagctgatctgtcaatgggcacttgagcatttcaccccactccatatatggtctggaagccaagagagccactacagaggattttctgactgcctcagcccttcatggccttcagtgggggacagagtgggaggtgtcaatcactctggtaactgtgaggttgcccagtaaatccatttcagaaaatcaccggtttctctgcccctacaaatgattaatacaagagaatgcccagttctccattcaggtctcccaaattcatacctaatttgaagtctcctgaagttggaaataatgagcagatcctcacaattggtgtgatctaaggttgtcactttaagagactccattctctcctctgtaaagtgtatctaaaaattctccacatagtggaaaactcttagttaaaggtattcaataaagggtattgatcatttttggggggaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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