GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-20 15:27:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NR_169078                594 bp    RNA     linear   ROD 25-FEB-2022
DEFINITION  Mus musculus predicted gene, 41600 (Gm41600), long non-coding RNA.
ACCESSION   NR_169078 XR_876875
VERSION     NR_169078.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT033752.6.
            
            On Jun 8, 2020 this sequence version replaced XR_876875.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AA985848.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               CT033752.6         169171-169307
            138-208             CT033752.6         176525-176595
            209-594             CT033752.6         190888-191273
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17"
     gene            1..594
                     /gene="Gm41600"
                     /note="predicted gene, 41600"
                     /db_xref="GeneID:105246296"
                     /db_xref="MGI:MGI:5624485"
     ncRNA           1..594
                     /ncRNA_class="lncRNA"
                     /gene="Gm41600"
                     /product="predicted gene, 41600"
                     /db_xref="GeneID:105246296"
                     /db_xref="MGI:MGI:5624485"
     exon            1..137
                     /gene="Gm41600"
                     /inference="alignment:Splign:2.1.0"
     exon            138..208
                     /gene="Gm41600"
                     /inference="alignment:Splign:2.1.0"
     exon            209..594
                     /gene="Gm41600"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gtaaaggagataaacccagtctttacacagactgttcactctggggaaattgaggtaaagcggaacaggatttggagctgggaaatgatgactggagcaagcatctttgagatcaccctggctctccctgcttcgtggtaccaaatatctgaaataaaaagatatctgtctacacagtgggagaaggaggatccgcagccgatactaggagtgaaaactcaaaaagatcttggctaaaacagattccatattgtgggaagccgccctcacattcgccgttgcaagatggcgctgacatcctgtgttctaagtggtaaacaaataatctgcgcatgtgccaagggtagttctccactccatgtgctctgccttccccgtgatgacaactgggccgatgggctgcagccaatcagggagtaatacatcctaggcggaggataattctccttaaaagggacggggttttgccattctttctcttgctttcttgttcttgttctttttcttgttttcttgctcttgttctttttctctctcttgctctcttgctctctggctcctgaagatgtaagcaataaagcttttgccacagaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]