GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-29 16:54:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NR_167710               1049 bp    RNA     linear   ROD 07-AUG-2023
DEFINITION  Mus musculus phosphatidylinositol-4-phosphate 5-kinase, type 1
            beta, opposite strand (Pip5k1bos), transcript variant 1, long
            non-coding RNA.
ACCESSION   NR_167710 XR_386616
VERSION     NR_167710.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC165089.5.
            
            On Apr 17, 2020 this sequence version replaced XR_386616.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CN840178.1, AK015163.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-182               AC165089.5         209642-209823
            183-267             AC165089.5         211563-211647
            268-398             AC165089.5         212545-212675
            399-1049            AC165089.5         223677-224327
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 19.52 cM"
     gene            1..1049
                     /gene="Pip5k1bos"
                     /gene_synonym="4930418C01Rik"
                     /note="phosphatidylinositol-4-phosphate 5-kinase, type 1
                     beta, opposite strand"
                     /db_xref="GeneID:102637283"
                     /db_xref="MGI:MGI:1922106"
     ncRNA           1..1049
                     /ncRNA_class="lncRNA"
                     /gene="Pip5k1bos"
                     /gene_synonym="4930418C01Rik"
                     /product="phosphatidylinositol-4-phosphate 5-kinase, type
                     1 beta, opposite strand, transcript variant 1"
                     /db_xref="GeneID:102637283"
                     /db_xref="MGI:MGI:1922106"
     exon            1..182
                     /gene="Pip5k1bos"
                     /gene_synonym="4930418C01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            183..267
                     /gene="Pip5k1bos"
                     /gene_synonym="4930418C01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            268..398
                     /gene="Pip5k1bos"
                     /gene_synonym="4930418C01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            399..1049
                     /gene="Pip5k1bos"
                     /gene_synonym="4930418C01Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
agcaacaggcaggcttctgaactaaacacacacctgatttggttatctagcttgagagaaacttctgccatccagttgggtaaacgaatgagcttttgagagaatgaactagtatgtgaacagaagtgaacgcaagcagccttggcttctgcagaccaccaccaactagggctgccaggcagtgatggtgactattctcaacagactgcaaaatccacagtgaatgtcaaattccttccaaaggaaaggattgattctgttattgaggtagggagacataagcagttctgatgtgagaaaagggaagaggctaaagaggaaagtgacacacaatgggagaaggacccaaccctgccccttgtctttgaagaggatggaaggggccatgaaccaggaataatccacaattctagcatttgaaatctcgatattttcctatgtgacccctttacaaaaatcttcaggggtacacaccaagcacagggaggttgtgataaagagagctaagtcatgggccttgtggcaagaagatctgctgctccgatgggaaccccctggccccaccatgcaggaggcaggtcatcaccttatattcagtctttgcattagaaaatgaagcagcattgttcactatgagcaggaacaacagctgcagtggagtctggacacagggacagaaatgccccagaccctgtcctgtcctaatatcaaacacaactatgttgtggtgtctgttccctataatgggttatgaacttagaatggaatctcctctggggatattttagggacacccatgtaatggttgctgaaactggggatcaaagacagagtactggtggttgcaagagatagggcacagccaaccactccaaggccccctccaatgtgagtgcagaaagtggccatcttttgttgaccccattggagaaacagactgatgagatggcttgcttccctggtgggctctctctgaagctgctggttcactcgctcaatgatatgtgacatctcactgcaaggaataaaggactatttgataacatgta
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]