GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-04 04:11:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NR_164362                729 bp    RNA     linear   ROD 07-AUG-2023
DEFINITION  Mus musculus reproductive homeobox 11, pseudogene 2 (Rhox11-ps2),
            long non-coding RNA.
ACCESSION   NR_164362 XM_006541566 XM_006544918
VERSION     NR_164362.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL590629.16.
            
            On or before Sep 13, 2019 this sequence version replaced
            XM_006544918.2, XM_006541566.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189682.145759.1,
                                           SRR5189685.103948.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-427               AL590629.16        130574-131000       c
            428-473             AL590629.16        127856-127901       c
            474-729             AL590629.16        125932-126187       c
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 22.19 cM"
     gene            1..729
                     /gene="Rhox11-ps2"
                     /gene_synonym="Gm14544; Rhox11-ps"
                     /note="reproductive homeobox 11, pseudogene 2"
                     /db_xref="GeneID:102637882"
                     /db_xref="MGI:MGI:3705790"
     ncRNA           1..729
                     /ncRNA_class="lncRNA"
                     /gene="Rhox11-ps2"
                     /gene_synonym="Gm14544; Rhox11-ps"
                     /product="reproductive homeobox 11, pseudogene 2"
                     /db_xref="GeneID:102637882"
                     /db_xref="MGI:MGI:3705790"
     exon            1..427
                     /gene="Rhox11-ps2"
                     /gene_synonym="Gm14544; Rhox11-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            428..473
                     /gene="Rhox11-ps2"
                     /gene_synonym="Gm14544; Rhox11-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            474..729
                     /gene="Rhox11-ps2"
                     /gene_synonym="Gm14544; Rhox11-ps"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
acactcggagactcaaagcctcctgaactccagggtccagtgacttcggcagagctccacccatggcatataagaaatactacttcgatgttgacaagtacggtgtggacttttatgaagaagaagtagcatctgaaatccagcaacggaggttagcaacaacagatgatagccacactgaagaagttgtaggaatcctgaagggactgagctacataaacgctgtgttggaccacaactacaaccgtccaatgaagagcgacacctgtaggaaaccccttgagcctgcacaagaagaggaggaggaggagcctgtttttcgaaagccaaccaagtattgccgaaagcagtacaagttcactcctgaacaactacttgaactagacagaatttttgaagaaactcaatgccccgatacactccaaaggaaagagattgcaaagctcatgaatgtagaggaatgcactgtgaagatttggttctgcaatcaaagagccaaacttaggaaaaatcagaaggcagcaccgtgcaacaaagccctacctaataaacagagctgctttccccgaaaggttttgaaagaaaccaagaacgttgttgttcttcaggagccgcttgcggatgagtttttctgctgtcggccacatgttagccacccaaattggcggtgacaacactatcactttatgtaaattagcaataaagaggagaaatctctttttgcttcaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]