LOCUS       NR_164359               1273 bp    RNA     linear   ROD 31-OCT-2023
DEFINITION  Mus musculus eukaryotic translation initiation factor 2C, 5
            (Eif2c5l), long non-coding RNA.
ACCESSION   NR_164359 XR_387075
VERSION     NR_164359.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1273)
  AUTHORS   Li K, Zhong S, Luo Y, Zou D, Li M, Li Y, Lu Y, Miao S, Wang L and
            Song W.
  TITLE     A long noncoding RNA binding to QKI-5 regulates germ cell apoptosis
            via p38 MAPK signaling pathway
  JOURNAL   Cell Death Dis 10 (10), 699 (2019)
   PUBMED   31541077
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1273)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
REFERENCE   3  (bases 1 to 1273)
  AUTHORS   Chi SW, Zang JB, Mele A and Darnell RB.
  TITLE     Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
  JOURNAL   Nature 460 (7254), 479-486 (2009)
   PUBMED   19536157
REFERENCE   4  (bases 1 to 1273)
  AUTHORS   Carmell MA, Xuan Z, Zhang MQ and Hannon GJ.
  TITLE     The Argonaute family: tentacles that reach into RNAi, developmental
            control, stem cell maintenance, and tumorigenesis
  JOURNAL   Genes Dev 16 (21), 2733-2742 (2002)
   PUBMED   12414724
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX470203.6 and AL672306.11.
            
            On Sep 13, 2019 this sequence version replaced XR_387075.4.
            
            Sequence Note: The RefSeq transcript was derived from the reference
            genome assembly. The genomic coordinates were determined from
            alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189673.1883.1,
                                           SRR5189685.132529.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-351               BX470203.6         44956-45306
            352-419             BX470203.6         46464-46531
            420-1273            AL672306.11        13330-14183
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 61.47 cM"
     gene            1..1273
                     /gene="Eif2c5l"
                     /gene_synonym="Ago5; Eif2c5; Lnc10"
                     /note="eukaryotic translation initiation factor 2C, 5"
                     /db_xref="GeneID:286951"
                     /db_xref="MGI:MGI:2446636"
     ncRNA           1..1273
                     /ncRNA_class="lncRNA"
                     /gene="Eif2c5l"
                     /gene_synonym="Ago5; Eif2c5; Lnc10"
                     /product="eukaryotic translation initiation factor 2C, 5"
                     /db_xref="GeneID:286951"
                     /db_xref="MGI:MGI:2446636"
     exon            1..351
                     /gene="Eif2c5l"
                     /gene_synonym="Ago5; Eif2c5; Lnc10"
                     /inference="alignment:Splign:2.1.0"
     exon            352..419
                     /gene="Eif2c5l"
                     /gene_synonym="Ago5; Eif2c5; Lnc10"
                     /inference="alignment:Splign:2.1.0"
     exon            420..1273
                     /gene="Eif2c5l"
                     /gene_synonym="Ago5; Eif2c5; Lnc10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cccccctccaggaccaagacctcgtggctctcgtgcagaatccctttggtgctggcaggaagtgaaagagcaaattggttttgcaaactcagtgagagcatcctcagggaggctgagaaaagttcccctctcccttttactggattcaaccagcctggaaatcaagtaagttccctcagggctaggtgactgtaattccccagggctctggaaacccttgggaggtacaatctccctaaccttgggacttgatcgaagaagacatctagccagaagtcccttggagctgataggctgcggttccgctgtgtgttctacgcgtgggtcctggtccttggaacaggaaggccggcacatcatgtgctaccctcatccatagctcactgagtccatcttgtgatgtcgtacatacactggaagatgaatactcttgaagaaaaggaaagatgtgggacctgctggtacttcgagtgtattatctggagagaaagatgaggaattggcggaagtacagagaagtgtacaggaaagccttcctagtctcttttatggctgcttcctatggggagcagaggccacttagcctcaagagactgctcagttgcctgtgatgttctaacatctgcctttctatgccccactttcttctatctacctttatctctcatttttcctacctttttgccaactgtatgtgccgtactttaaaaggtatgcagtagttaaaaacaaacgaacaaacaaacgaacaaagaatccaaggatatggatttaagtgttcctctgcatagtttatttacctatatgtacaaatatttagattgagtatttgtttatgttatttgaatgtaggtattatatagatttgttaaaataatatccagcaatgccttattttcaataagttaccacattaggctctattgtggtatgaatgtgaactgacctccatatgcttgtatgttgaaatacttggtttttagttggtggtagaagtttggaaccttgtaaaatgtgttttacacagagccttgatgaaacaagtgcctcagtgttgggtgaaccttggtgttcaaaagcctggttccattatctatcatctgcttcctcactgcagaggcaatgaaaacagccactgccttaccctctctgccatggaagaatgtataattcctaaaattgtaagtccaagtaaacccttctttaagacattcttgcctaagatttctgtattgaaaaatacctagaatatcaataaagaatattcctggga

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