2024-04-30 03:55:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_136900 1154 bp RNA linear ROD 12-DEC-2023 DEFINITION Mus musculus PRAME like 51 (Pramel51), transcript variant 3, non-coding RNA. ACCESSION NR_136900 VERSION NR_136900.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1154) AUTHORS Wan Y, Yang S, Li T, Cai Y, Wu X, Zhang M, Muhammad T, Huang T, Lv Y, Chan WY, Lu G, Li J, Sha QQ, Chen ZJ and Liu H. TITLE LSM14B is essential for oocyte meiotic maturation by regulating maternal mRNA storage and clearance JOURNAL Nucleic Acids Res 51 (21), 11652-11667 (2023) PUBMED 37889087 REFERENCE 2 (bases 1 to 1154) AUTHORS Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P, Eppig JJ, Solter D and Knowles BB. TITLE Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo JOURNAL Genes Dev 20 (19), 2713-2727 (2006) PUBMED 17015433 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CA560787.1, DV659507.1, AK139576.1 and CT030175.7. ##Evidence-Data-START## Transcript exon combination :: DV659507.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-86 CA560787.1 1-86 87-747 DV659507.1 1-661 748-1146 AK139576.1 1072-1470 1147-1154 CT030175.7 62474-62481 FEATURES Location/Qualifiers source 1..1154 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="12" /map="12 42.35 cM" gene 1..1154 /gene="Pramel51" /gene_synonym="Gm10436" /note="PRAME like 51" /db_xref="GeneID:100039315" /db_xref="MGI:MGI:3704393" misc_RNA 1..1154 /gene="Pramel51" /gene_synonym="Gm10436" /product="PRAME like 51, transcript variant 3" /db_xref="GeneID:100039315" /db_xref="MGI:MGI:3704393" exon 1..155 /gene="Pramel51" /gene_synonym="Gm10436" /inference="alignment:Splign:2.1.0" misc_feature 51..158 /gene="Pramel51" /gene_synonym="Gm10436" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_001105254.1" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 156..303 /gene="Pramel51" /gene_synonym="Gm10436" /inference="alignment:Splign:2.1.0" exon 304..1154 /gene="Pramel51" /gene_synonym="Gm10436" /inference="alignment:Splign:2.1.0" ORIGIN
tagctgggagggtgtggctacaaagggagggttcagctgaaaggtatataatgattcatagcaaggagaggaagtatagattaggtctcttggagcctggagtcacagctttcccttgcccgaatatggtgatctgtctccattgtccagatcagtaggtgcaaactcagagtaattaattggagagaagatgacttgaagatatgggctggatcccatgaaggtgaaggcttaccagatttcaggacagagaagcagccaattgagaacagtcctggctgtgaggtgaagaaagaattgaaggtgcctgaaaaagcccttggagacactttgcatcagtaactgtgacctctcacagtcagacttggattgcctgcccttttgcctgaatatttgtgaactcaaacatctgcatattagtgatatatatttatgtgatttactccttgagcctcttggttttctccttgagagagttggagataccctgaaaaccctggaattggtttcatgttgtatagtggactttcagttcagtgccttgctgcctgccctaagccaatgttctcacctcagagaggtcactttctatgataatgatgtttctctgcctttcttgaaacaacttctacaccacacagccctgctgagtcagctgatctatgagtgttaccctgcccctatagagtgctatgatgacagtggtgtaatactaacacacagattagaaagtttttgtcctgagctcctggatatactgagagccaaaagacagctccatagtgtctcctttcaaacaaccaaatgctctaaatgtggtgggtgctacatttatgatcggcatacccaatgttgccgttttgtggaactatgataagcttgattgtgaaactgagaaatagaaacttagtattggggactgatgaaatcctaagtgaatgtccactgctaaatggagcatgaaaatgtcaatcacctaaaagtctgagatacacgggaaagtcaataacttcctctgagctggtgaatggatgttgcatctgtagaaagaatcaagcacttgtagtttgaatgtgttacaatagaagcaccattttatgagactggcccaatctgttgactgcatacaataaatatgttgacttttttttttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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