2024-04-20 02:18:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_108059 2329 bp RNA linear ROD 04-AUG-2023 DEFINITION Mus musculus RIKEN cDNA 4930463O16 gene (4930463O16Rik), long non-coding RNA. ACCESSION NR_108059 XR_380640 XR_393094 VERSION NR_108059.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2329) AUTHORS Chadourne M, Poumerol E, Jouneau L, Passet B, Castille J, Sellem E, Pailhoux E and Mandon-Pepin B. TITLE Structural and Functional Characterization of a Testicular Long Non-coding RNA (4930463O16Rik) Identified in the Meiotic Arrest of the Mouse Topaz1-/- Testes JOURNAL Front Cell Dev Biol 9, 700290 (2021) PUBMED 34277642 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2329) AUTHORS Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming LG. TITLE The Vertebrate Genome Annotation browser 10 years on JOURNAL Nucleic Acids Res 42 (Database issue), D771-D779 (2014) PUBMED 24316575 COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from AK015500.1 and AK086567.1. On or before Apr 18, 2014 this sequence version replaced XR_380640.1, XR_393094.1. ##Evidence-Data-START## Transcript exon combination :: AK015500.1, SRR5189685.118766.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1923 AK015500.1 1-1923 1924-2329 AK086567.1 1-406 c FEATURES Location/Qualifiers source 1..2329 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="10" /map="10 41.49 cM" gene 1..2329 /gene="4930463O16Rik" /note="RIKEN cDNA 4930463O16 gene" /db_xref="GeneID:75804" /db_xref="MGI:MGI:1923054" ncRNA 1..2329 /ncRNA_class="lncRNA" /gene="4930463O16Rik" /product="RIKEN cDNA 4930463O16 gene" /db_xref="GeneID:75804" /db_xref="MGI:MGI:1923054" exon 1..889 /gene="4930463O16Rik" /inference="alignment:Splign:2.1.0" exon 890..1290 /gene="4930463O16Rik" /inference="alignment:Splign:2.1.0" exon 1291..1423 /gene="4930463O16Rik" /inference="alignment:Splign:2.1.0" exon 1424..2329 /gene="4930463O16Rik" /inference="alignment:Splign:2.1.0" ORIGIN
ggaaacataggtaacaacctcatgtacatttctccacgccctgtattcttccctcccagtaaatctcttttatgatgtttgctgcctgatgtgactctctcatcagaagaagccaagaagcaatgaagcaaagaagggtagatgggagcaggctgaggctccggagctcagctggggatacgtcccctgggacctgcagtgtagaagaggagccgctagggggagctgataacagtgtagcactccagttgaccaaccatatcctccataagggctgcaagccctctgctaaggtttcctctcagagttgtgtggttcctgggctcccacgtctcagaatgtccttcctttgcgacattgtcccacctcagagctgtgtatgttcctgggctcccaagtcccaggataactttccactgagcagaaacaccaacagttgttatgcccagtgctcgggaaccccagaagaatgccaggaagtacaagtccgatgttaaagagactcagagcaaagtctttcccactgtgcaggttagggatgtgatgcccgcatccaggggcttggagtatatatacacgtgcatattcataggcagagctcctcgaactttggggttacgtgactggggaggtgatgagggaaagctatccttcaaacccgataacgtttgttcagggcaaaaccatgcagctgggagggggaccctcctgacctgggaagtaactttatggagctatcaggagctagtgtatttttacatactggttgcagctgtctgggaacacttaattgcccttccttcatggtccaagcatgggccttttatcatttcaaggatgtttggtccttgttcccttcaagggcaggagccttctgcacctgagaaaggtttctggatccagctgaagagctctatcattccatcaaaaccatgagaactgcctgagctaacactgactgctacttgaatcttgtgagaagcctgagacagaagggcagccacactctgggtacccagctgtgccactctgaattctagagtgtctttaacctagcggacttggtagtcactcaggttatagcaagagacagctgatttatgatagcttcaagtgtggtgtgccggctatcttgattgtcagctcggcgggagtttagaactacctaggagataagctcaagtgtgtctgtgaagatggttccagaggtgaaactaaggaatggaaacatgaaagtgggtgacaccccacacacactgggctcccagactgatggaagaaaaggaaaagattcatggggtcagcctgcaagaaatccatttgcataagagaccagaaataagccaccttacagagggagatgctcaagcaggcatgacgaattatagatgacctcagtcttaggcactgccctcattgagagctctaaagctctgagattctagggcagaaatacagaaaggaagccatcttgctcagggagggagaactcacttccagattctgagggctttattcattcttggcaccaccaccaacaacaaccaccatcttttaagagctgacagaatccaagctctgcagagcctctaggctgacaccccaagtggtgggagcccaagagtacagctcaggctactgttattttccaagcctgcctcagagacctggtcttaaaaggaggcaattttcacacaaatcagacggcattctcattaaaataatgagttgcaagaataacagcttcccagggccattatctacaaaccctccaggctaacctggcagctttggcgaaagtccctgcagttgcaaccactgatgcctgtgatggagaaagaagaataaggaatccagatggaagaggtctgtccgtgcttgcagcacagcccctcctggttttgttggagatcttgccccgtggaaccacatggcagaccactcacgtttcccagtctggtttggatcaaccacggcttctcctgatgccttcttaccggccaggtgcagtgctaaagtgggcacagtgacagcaagggagaggcccagaggaaaaagactcggagcatgcaatttgggtttattttgaaaaaaaaaaaaaaaaaaaaaacaaaggccatgatgttaaactaaataatatccataaagggcctctagtgcctgggacctggcacgagattcaatgctctggaggtaagcggcccccccttccttctgcaaatcacagcaacaccagtagagatgctagctttggcaatgcctcctcccagaatgcacttgatctgctgttgagcaaatgctcagattttcaacttctgtatttactgtc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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