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2024-03-29 15:50:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NR_030781               2889 bp    RNA     linear   ROD 04-AUG-2023
DEFINITION  Mus musculus ankyrin repeat domain 10 (Ankrd10), transcript variant
            5, non-coding RNA.
ACCESSION   NR_030781
VERSION     NR_030781.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2889)
  AUTHORS   Yoshikawa T, Piao Y, Zhong J, Matoba R, Carter MG, Wang Y, Goldberg
            I and Ko MS.
  TITLE     High-throughput screen for genes predominantly expressed in the ICM
            of mouse blastocysts by whole mount in situ hybridization
  JOURNAL   Gene Expr Patterns 6 (2), 213-224 (2006)
   PUBMED   16325481
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK014768.1 and AK039879.1.
            
            On Aug 13, 2013 this sequence version replaced NR_030781.1.
            
            Transcript Variant: This variant (5) has multiple differences
            compared to variant 1, including the use of an alternate promoter.
            This variant is represented as non-coding because it lacks a large
            portion of the coding region, including the translational start
            codon, found in variant 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK014768.1, BY714263.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1652              AK014768.1         1-1652
            1653-2889           AK039879.1         1107-2343
FEATURES             Location/Qualifiers
     source          1..2889
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 5.73 cM"
     gene            1..2889
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /note="ankyrin repeat domain 10"
                     /db_xref="GeneID:102334"
                     /db_xref="MGI:MGI:1921840"
     misc_RNA        1..2889
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /product="ankyrin repeat domain 10, transcript variant 5"
                     /db_xref="GeneID:102334"
                     /db_xref="MGI:MGI:1921840"
     exon            1..226
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            227..379
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            380..471
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            472..583
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            584..819
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    681..1079
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /inference="COORDINATES:
                     alignment:Blast2seq::RefSeq|NM_001167967.2"
                     /note="predicted ORF does not meet quality criteria for
                     protein coding locus with longer protein data."
                     /db_xref="GeneID:102334"
     exon            820..2889
                     /gene="Ankrd10"
                     /gene_synonym="4833425P12Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
agttgaggccgtttgcgcggaggccgccgggcttcgggaatcgtggcgaggaggaaactgggggcctcgcgcttctgtctaatggaaaccgggtgcagggccccctgaaggcacggagggatgggcgctgccctcgtagccgggggtgtcaagtctgcacctgctatggccgacggcggggtcgcggccatgcctatcggccccctctccaccgggaccgtcctgtttggagtgcttaatgcagttggtaagagcaggagcctcactgaatgtctcgaccacccgctatgcccagaccccagcccacatcgctgcttttggaggacatcctcagtgtctggtctggctgattcaagctggggccaacattaacaaaccggactgtgagggggaaactcccattcacaaggcggcccgctcagggagcctcgagtgcatcactgccctggtagggagcggggctcacaccgataaccctaacaagcgcaagcatcagggtttggattgctcatctctctgatacaaagcgaggccttcatttcatcacgtcttggttggacgtgaagaatagctggctgaatagcctgagaaatgccagtggcctgacagcagcagacattgcacaaacccagggtttccaagagtgcacccagtttctcttgagcctccagaaccatcaaatgagccgtttctgtcataatggcaccttgagtggaggtcatgagagcatactgcccactcacgttagcctgggaacaaaccgaaagagatgcctggaagactcagaatctttgggagtgaagaaagctagaaccagagttcccagcctggatcacgccatgcctctagcaaatggagaggctgaagatgatgccgacagaatgcacgtggacagagagtgtgctgctgtatcaggtgggactggacagtttcctgttagctgcaacaacaccccagtggtggaggacaccaagcaacaggagagtagttctgttggacctaaagaaatagagatatatactgtttcagcaatgcaaaccccttgtcgttgcaagaatcagtatgcttactatttctgagttctcaaactttgcactttcttgtccagtgtcttgaagaaaaaaaaaagggttctattataatttttggcacttgtacagatgcaagaattaagtgtttttggtaaattctgttgctatgaggactagcgcaatctccctgttagatttgaagctgttacatgatgtgccttgcttgtttctcatgaggtctacagttacggtttcctgatgtggcctttgggtggctctgcacatgctgttgctcatactctgaagggagtgcagcaggtgaacagctagctcacggaaatgctgggaactaactgtgagggtggtggctgtggcttgtgacctactcaagacaagtttgggataactgccccacgctcttggttgctttggtgtctagcattcccttgaagactgtaaaatactgatcattttctgcagagtttatgtgttacagtgtccagaagactacaacataacccttactttaatgtttcaaagtcaaaggagctgagttttcttagacttaggatttctaaaatgctgtatttatttggcacatgccttttccccaatctttgggtgataacaaaaataccatggctaatttttatataaaagtgttttgttatggtgttcatttcttcactggaaataaaaggtcacctgtgtgtttcctaacccacaggtaatattgtcaagcccagaacttgctctgtcataggtggtgataactttggccaaatcattaatgcactgggtgctcacccatgaacagtttgctcagagcaaatgttcatttaaagcaatggtttctgaaatcagcagaggctgttttgcctaacagaggaaaagtggtaaaagccagagcctctcctttatggagacagcattgttcccttcctggtcaggcaggagaaagaagctcttcgctcttctcatgccagcaggcaggtcgtcctggatgtcagaaggccacgtgggccttctggtgttttccagtactgtctgactcaggaaacgtgttggcactccctagagattcttgccaattcctagtgtgaaatagcacgctgtgcacagaaaggctgtggagacagctaccctgccctgagatctgcacagacagaaataaggagtttcctccttaaatgcatctctgctctttttgaaaagctgtgagatgatcctgtcatctttttaatgtcccttgcttgagacccatcactgggcttgattgatcatctccccaagctcagcctggctgcctgtacccagtgctttgtactgagtggcttctgtccgcagctgagtgagtgggtgtagagtggacttgggtgagctggctgtcactgtgagtctccagctcctgcccttgacccagacaaggctaggctgccagtcctttgattttgagattacataggggtgcctcacagccatatataatgggatctgatgccctcttcttgtgtctgaagacagatcatatgaatgaaataaatctttaaaaaaaaaaaaagaaaagagaaactgatgtacttcacttgtgcactaactgggaaaataccgtctgcacagacgttgattactttgaaattcactgtgttttttatgagttatcacctaaaaaggtaatttataatttatctttggaaaaatagtggatacttttccccattgagaatattttgtttctttgctagtcttgaaatactccttttctaatagtggattgtttaaagagaaatgctgtaattttaggtgaaaaatatcctctgaacagattccagttgttaaataaattatgattactaat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]