2024-03-29 15:50:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_030781 2889 bp RNA linear ROD 04-AUG-2023 DEFINITION Mus musculus ankyrin repeat domain 10 (Ankrd10), transcript variant 5, non-coding RNA. ACCESSION NR_030781 VERSION NR_030781.2 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2889) AUTHORS Yoshikawa T, Piao Y, Zhong J, Matoba R, Carter MG, Wang Y, Goldberg I and Ko MS. TITLE High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization JOURNAL Gene Expr Patterns 6 (2), 213-224 (2006) PUBMED 16325481 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK014768.1 and AK039879.1. On Aug 13, 2013 this sequence version replaced NR_030781.1. Transcript Variant: This variant (5) has multiple differences compared to variant 1, including the use of an alternate promoter. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1. ##Evidence-Data-START## Transcript exon combination :: AK014768.1, BY714263.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164135 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1652 AK014768.1 1-1652 1653-2889 AK039879.1 1107-2343 FEATURES Location/Qualifiers source 1..2889 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="8" /map="8 5.73 cM" gene 1..2889 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /note="ankyrin repeat domain 10" /db_xref="GeneID:102334" /db_xref="MGI:MGI:1921840" misc_RNA 1..2889 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /product="ankyrin repeat domain 10, transcript variant 5" /db_xref="GeneID:102334" /db_xref="MGI:MGI:1921840" exon 1..226 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /inference="alignment:Splign:2.1.0" exon 227..379 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /inference="alignment:Splign:2.1.0" exon 380..471 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /inference="alignment:Splign:2.1.0" exon 472..583 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /inference="alignment:Splign:2.1.0" exon 584..819 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /inference="alignment:Splign:2.1.0" misc_feature 681..1079 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_001167967.2" /note="predicted ORF does not meet quality criteria for protein coding locus with longer protein data." /db_xref="GeneID:102334" exon 820..2889 /gene="Ankrd10" /gene_synonym="4833425P12Rik" /inference="alignment:Splign:2.1.0" ORIGIN
agttgaggccgtttgcgcggaggccgccgggcttcgggaatcgtggcgaggaggaaactgggggcctcgcgcttctgtctaatggaaaccgggtgcagggccccctgaaggcacggagggatgggcgctgccctcgtagccgggggtgtcaagtctgcacctgctatggccgacggcggggtcgcggccatgcctatcggccccctctccaccgggaccgtcctgtttggagtgcttaatgcagttggtaagagcaggagcctcactgaatgtctcgaccacccgctatgcccagaccccagcccacatcgctgcttttggaggacatcctcagtgtctggtctggctgattcaagctggggccaacattaacaaaccggactgtgagggggaaactcccattcacaaggcggcccgctcagggagcctcgagtgcatcactgccctggtagggagcggggctcacaccgataaccctaacaagcgcaagcatcagggtttggattgctcatctctctgatacaaagcgaggccttcatttcatcacgtcttggttggacgtgaagaatagctggctgaatagcctgagaaatgccagtggcctgacagcagcagacattgcacaaacccagggtttccaagagtgcacccagtttctcttgagcctccagaaccatcaaatgagccgtttctgtcataatggcaccttgagtggaggtcatgagagcatactgcccactcacgttagcctgggaacaaaccgaaagagatgcctggaagactcagaatctttgggagtgaagaaagctagaaccagagttcccagcctggatcacgccatgcctctagcaaatggagaggctgaagatgatgccgacagaatgcacgtggacagagagtgtgctgctgtatcaggtgggactggacagtttcctgttagctgcaacaacaccccagtggtggaggacaccaagcaacaggagagtagttctgttggacctaaagaaatagagatatatactgtttcagcaatgcaaaccccttgtcgttgcaagaatcagtatgcttactatttctgagttctcaaactttgcactttcttgtccagtgtcttgaagaaaaaaaaaagggttctattataatttttggcacttgtacagatgcaagaattaagtgtttttggtaaattctgttgctatgaggactagcgcaatctccctgttagatttgaagctgttacatgatgtgccttgcttgtttctcatgaggtctacagttacggtttcctgatgtggcctttgggtggctctgcacatgctgttgctcatactctgaagggagtgcagcaggtgaacagctagctcacggaaatgctgggaactaactgtgagggtggtggctgtggcttgtgacctactcaagacaagtttgggataactgccccacgctcttggttgctttggtgtctagcattcccttgaagactgtaaaatactgatcattttctgcagagtttatgtgttacagtgtccagaagactacaacataacccttactttaatgtttcaaagtcaaaggagctgagttttcttagacttaggatttctaaaatgctgtatttatttggcacatgccttttccccaatctttgggtgataacaaaaataccatggctaatttttatataaaagtgttttgttatggtgttcatttcttcactggaaataaaaggtcacctgtgtgtttcctaacccacaggtaatattgtcaagcccagaacttgctctgtcataggtggtgataactttggccaaatcattaatgcactgggtgctcacccatgaacagtttgctcagagcaaatgttcatttaaagcaatggtttctgaaatcagcagaggctgttttgcctaacagaggaaaagtggtaaaagccagagcctctcctttatggagacagcattgttcccttcctggtcaggcaggagaaagaagctcttcgctcttctcatgccagcaggcaggtcgtcctggatgtcagaaggccacgtgggccttctggtgttttccagtactgtctgactcaggaaacgtgttggcactccctagagattcttgccaattcctagtgtgaaatagcacgctgtgcacagaaaggctgtggagacagctaccctgccctgagatctgcacagacagaaataaggagtttcctccttaaatgcatctctgctctttttgaaaagctgtgagatgatcctgtcatctttttaatgtcccttgcttgagacccatcactgggcttgattgatcatctccccaagctcagcctggctgcctgtacccagtgctttgtactgagtggcttctgtccgcagctgagtgagtgggtgtagagtggacttgggtgagctggctgtcactgtgagtctccagctcctgcccttgacccagacaaggctaggctgccagtcctttgattttgagattacataggggtgcctcacagccatatataatgggatctgatgccctcttcttgtgtctgaagacagatcatatgaatgaaataaatctttaaaaaaaaaaaaagaaaagagaaactgatgtacttcacttgtgcactaactgggaaaataccgtctgcacagacgttgattactttgaaattcactgtgttttttatgagttatcacctaaaaaggtaatttataatttatctttggaaaaatagtggatacttttccccattgagaatattttgtttctttgctagtcttgaaatactccttttctaatagtggattgtttaaagagaaatgctgtaattttaggtgaaaaatatcctctgaacagattccagttgttaaataaattatgattactaat
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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