2024-04-19 13:57:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_027803 2761 bp RNA linear ROD 22-AUG-2022 DEFINITION Mus musculus DNA segment, Chr 6, ERATO Doi 474, expressed (D6Ertd474e), long non-coding RNA. ACCESSION NR_027803 XR_035146 XR_035149 VERSION NR_027803.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2761) AUTHORS Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming LG. TITLE The Vertebrate Genome Annotation browser 10 years on JOURNAL Nucleic Acids Res 42 (Database issue), D771-D779 (2014) PUBMED 24316575 REFERENCE 2 (bases 1 to 2761) AUTHORS Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP and Kingston RE. TITLE Characterization of the piRNA complex from rat testes JOURNAL Science 313 (5785), 363-367 (2006) PUBMED 16778019 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CJ059669.1, AK139687.1, BG081548.2 and BG068519.2. On or before Jun 18, 2009 this sequence version replaced XR_035146.1, XR_035149.1. ##Evidence-Data-START## Transcript exon combination :: AK139687.1, BY725578.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMN01164131, SAMN01164134 [ECO:0006172] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-5 CJ059669.1 2-6 6-2154 AK139687.1 2-2150 2155-2378 BG081548.2 323-546 2379-2761 BG068519.2 1-383 c FEATURES Location/Qualifiers source 1..2761 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 75.5 cM" gene 1..2761 /gene="D6Ertd474e" /gene_synonym="1700001I24Rik" /note="DNA segment, Chr 6, ERATO Doi 474, expressed" /db_xref="GeneID:52285" /db_xref="MGI:MGI:1196315" ncRNA 1..2761 /ncRNA_class="lncRNA" /gene="D6Ertd474e" /gene_synonym="1700001I24Rik" /product="DNA segment, Chr 6, ERATO Doi 474, expressed" /db_xref="GeneID:52285" /db_xref="MGI:MGI:1196315" exon 1..126 /gene="D6Ertd474e" /gene_synonym="1700001I24Rik" /inference="alignment:Splign:2.1.0" exon 127..262 /gene="D6Ertd474e" /gene_synonym="1700001I24Rik" /inference="alignment:Splign:2.1.0" exon 263..495 /gene="D6Ertd474e" /gene_synonym="1700001I24Rik" /inference="alignment:Splign:2.1.0" exon 496..2761 /gene="D6Ertd474e" /gene_synonym="1700001I24Rik" /inference="alignment:Splign:2.1.0" regulatory 2738..2743 /regulatory_class="polyA_signal_sequence" /gene="D6Ertd474e" /gene_synonym="1700001I24Rik" ORIGIN
attgcatacactcagtcttcaggaggaggcatcccctctgggtgcagaacttccgctgtggctgcttgctcaggataaactggtgggaccatgactcattttgtcactgggaccacaggaggaggggccagaagacaatgaagtgtgcggtgagcactctcacatttcgttagatgcaccgtctctgaaccagcttactcagaacttcaggatggcggtgtgcagttaccaactgttaagtcaaagattctggactgtttaggctgtgcctcgggaaatcattgcctctatgaagttgtccaaggcgagcttgataagcctctgaaggcacagaagaactgtttggagaggggcctatacatctcgatctacagctacagcgtcacatgctacccctcagaaacggaccttttaatgatttcatcctgtcaaaaatcgcatatttcaaaacattagaaagttgacttgcacaaatataaaacaagcatggatcaggatgcttcaccgtgtgctccataagctactcatctgatgtttcataggaagcagaagaaattcccagcaaagtgacctgtgttgcaagactcaaaagagggagagagagagttggctcagctggtgaagagcttgatggacatgaagacctgagcttggatctcccaacatctttgtgaaaggacgggcacagcccctgaatctccagagctgtgacaatggaagcaatggctcctcagagcttgctggccagccaacctgcttgagttcagctctagattctctgtgaccctgactcaaaaactaaggcgtggagtgactgaagaagagatctgatgtcaaccacttgttcttatttacacacacacacacacacacacacacacacacacacactcttaaataaaaattaaattatttgttgaaaatgacaaaaagatggacaccatacagttagaagtggcagctaccaagggacttgtcttgtggtgctcttttatcaacagtttctgattcctttgacatagcaagtggcagtcctgggagccggtttccagtcacaaatcccagttccctttctccccgttttgttcaggttctgccactgtcttgagtatgctcttttgtgcttactaaagctgtgctgtgtgggagagtcatctgtttgttccttgttcttcagtgggctgagtgatggacccctccctctttacagataatagatctgtgagaaatctcacaccactgggaccttatttgggcttagagatttgctggtgtagttgagaggcttgggagaagaacacaatggttaatttggttgttgactgttaggatctgaaatcactgaggagataaacttctgagtgtatctgtgaggaagattctagatagagttacgtgggattagaagactcagtctgactgtggattgtggagaattttaggacacattgctaaaaatgtctcctgggaacccagtcttcctcttaaaacatgaatgaaaatctctttcttcgggttggctggccagctcttcacacatttccttgtacatcattctgccgttcgtgagcacgggagcttgcactcactgatctccagtacctgggccaccttcgtgtctcagttgcttattttcttgagcagtctagggttgtgtaatcctgagagtcttgaggccgttagattattgctggtagagaagaggccaccaaggggcaggagacacaaggaaccattcatgtggcaggtggtgatcagagagagaaagcagagctaacggtggaagatttgagatatggaacctagtaattatagattttttgcacaaattatgagactctgcttcttttttattttttgaaagatagtctcattacgtagctccttcctatgcagaccaggctggccttggacgcagagattggcctgattctgctgggactaaggccactaaacctggcgacagtgaaaactttgtgcataaaatctaaggtttctccctttggtatccttgatttccttctacacaggaacgatatttagcaagcacacaacactcacaatatactaaatacagttctatgtgttatgtaaataacttgcttagtttccgggcaaacctataaggggtattgtcactgtccacatcgtactgagctgtagagccattcgaacaccttcctgcttccacaaggctgggcactgatgagttatgctgggcctcagttatggctgctggacgcaatacaagacacccagttgagtgtgagcctcaggcaaactcatgtttaagtgtaagcatggcctgcatttttattgctaactcttgtcagcctcatacccttgtttaccccttaatacatacaatctccttatttaaaaaaaagtctctgtagggacagaacaagaagcataactcagattaggtttctgtctgtgtcaatgtcctggatctaaggttggggagtgctgcagagtacatggtatgttctgttacttccttcctgtgcgaacacagctctcgttgtgtgttatcctgcaagggaactcgcatcgctatgagacgatgcctctccccccgctatttattacaagagatccattgcattgtcaaacgtggctgcagttccatccctggcccagaggcacgcagggtccccacatctagcctttaatgtcaacttggctttcactgacactaataatcactcattattccttctcaaaccctaatttaattaaaatatatgtttacaccacg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]