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2024-04-19 13:57:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NR_027803               2761 bp    RNA     linear   ROD 22-AUG-2022
DEFINITION  Mus musculus DNA segment, Chr 6, ERATO Doi 474, expressed
            (D6Ertd474e), long non-coding RNA.
ACCESSION   NR_027803 XR_035146 XR_035149
VERSION     NR_027803.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP
            and Kingston RE.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ059669.1, AK139687.1, BG081548.2 and BG068519.2.
            
            On or before Jun 18, 2009 this sequence version replaced
            XR_035146.1, XR_035149.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK139687.1, BY725578.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN01164131,
                                           SAMN01164134 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 CJ059669.1         2-6
            6-2154              AK139687.1         2-2150
            2155-2378           BG081548.2         323-546
            2379-2761           BG068519.2         1-383               c
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 75.5 cM"
     gene            1..2761
                     /gene="D6Ertd474e"
                     /gene_synonym="1700001I24Rik"
                     /note="DNA segment, Chr 6, ERATO Doi 474, expressed"
                     /db_xref="GeneID:52285"
                     /db_xref="MGI:MGI:1196315"
     ncRNA           1..2761
                     /ncRNA_class="lncRNA"
                     /gene="D6Ertd474e"
                     /gene_synonym="1700001I24Rik"
                     /product="DNA segment, Chr 6, ERATO Doi 474, expressed"
                     /db_xref="GeneID:52285"
                     /db_xref="MGI:MGI:1196315"
     exon            1..126
                     /gene="D6Ertd474e"
                     /gene_synonym="1700001I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            127..262
                     /gene="D6Ertd474e"
                     /gene_synonym="1700001I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            263..495
                     /gene="D6Ertd474e"
                     /gene_synonym="1700001I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            496..2761
                     /gene="D6Ertd474e"
                     /gene_synonym="1700001I24Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2738..2743
                     /regulatory_class="polyA_signal_sequence"
                     /gene="D6Ertd474e"
                     /gene_synonym="1700001I24Rik"
ORIGIN      
attgcatacactcagtcttcaggaggaggcatcccctctgggtgcagaacttccgctgtggctgcttgctcaggataaactggtgggaccatgactcattttgtcactgggaccacaggaggaggggccagaagacaatgaagtgtgcggtgagcactctcacatttcgttagatgcaccgtctctgaaccagcttactcagaacttcaggatggcggtgtgcagttaccaactgttaagtcaaagattctggactgtttaggctgtgcctcgggaaatcattgcctctatgaagttgtccaaggcgagcttgataagcctctgaaggcacagaagaactgtttggagaggggcctatacatctcgatctacagctacagcgtcacatgctacccctcagaaacggaccttttaatgatttcatcctgtcaaaaatcgcatatttcaaaacattagaaagttgacttgcacaaatataaaacaagcatggatcaggatgcttcaccgtgtgctccataagctactcatctgatgtttcataggaagcagaagaaattcccagcaaagtgacctgtgttgcaagactcaaaagagggagagagagagttggctcagctggtgaagagcttgatggacatgaagacctgagcttggatctcccaacatctttgtgaaaggacgggcacagcccctgaatctccagagctgtgacaatggaagcaatggctcctcagagcttgctggccagccaacctgcttgagttcagctctagattctctgtgaccctgactcaaaaactaaggcgtggagtgactgaagaagagatctgatgtcaaccacttgttcttatttacacacacacacacacacacacacacacacacacacactcttaaataaaaattaaattatttgttgaaaatgacaaaaagatggacaccatacagttagaagtggcagctaccaagggacttgtcttgtggtgctcttttatcaacagtttctgattcctttgacatagcaagtggcagtcctgggagccggtttccagtcacaaatcccagttccctttctccccgttttgttcaggttctgccactgtcttgagtatgctcttttgtgcttactaaagctgtgctgtgtgggagagtcatctgtttgttccttgttcttcagtgggctgagtgatggacccctccctctttacagataatagatctgtgagaaatctcacaccactgggaccttatttgggcttagagatttgctggtgtagttgagaggcttgggagaagaacacaatggttaatttggttgttgactgttaggatctgaaatcactgaggagataaacttctgagtgtatctgtgaggaagattctagatagagttacgtgggattagaagactcagtctgactgtggattgtggagaattttaggacacattgctaaaaatgtctcctgggaacccagtcttcctcttaaaacatgaatgaaaatctctttcttcgggttggctggccagctcttcacacatttccttgtacatcattctgccgttcgtgagcacgggagcttgcactcactgatctccagtacctgggccaccttcgtgtctcagttgcttattttcttgagcagtctagggttgtgtaatcctgagagtcttgaggccgttagattattgctggtagagaagaggccaccaaggggcaggagacacaaggaaccattcatgtggcaggtggtgatcagagagagaaagcagagctaacggtggaagatttgagatatggaacctagtaattatagattttttgcacaaattatgagactctgcttcttttttattttttgaaagatagtctcattacgtagctccttcctatgcagaccaggctggccttggacgcagagattggcctgattctgctgggactaaggccactaaacctggcgacagtgaaaactttgtgcataaaatctaaggtttctccctttggtatccttgatttccttctacacaggaacgatatttagcaagcacacaacactcacaatatactaaatacagttctatgtgttatgtaaataacttgcttagtttccgggcaaacctataaggggtattgtcactgtccacatcgtactgagctgtagagccattcgaacaccttcctgcttccacaaggctgggcactgatgagttatgctgggcctcagttatggctgctggacgcaatacaagacacccagttgagtgtgagcctcaggcaaactcatgtttaagtgtaagcatggcctgcatttttattgctaactcttgtcagcctcatacccttgtttaccccttaatacatacaatctccttatttaaaaaaaagtctctgtagggacagaacaagaagcataactcagattaggtttctgtctgtgtcaatgtcctggatctaaggttggggagtgctgcagagtacatggtatgttctgttacttccttcctgtgcgaacacagctctcgttgtgtgttatcctgcaagggaactcgcatcgctatgagacgatgcctctccccccgctatttattacaagagatccattgcattgtcaaacgtggctgcagttccatccctggcccagaggcacgcagggtccccacatctagcctttaatgtcaacttggctttcactgacactaataatcactcattattccttctcaaaccctaatttaattaaaatatatgtttacaccacg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]