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2024-05-04 13:36:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NR_002854               2793 bp    RNA     linear   ROD 17-OCT-2021
DEFINITION  Mus musculus distal-less homeobox 1, antisense (Dlx1as), antisense
            RNA.
ACCESSION   NR_002854
VERSION     NR_002854.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Vanyai HK, Garnham A, May RE, McRae HM, Collin C, Wilcox S, Smyth
            GK, Thomas T and Voss AK.
  TITLE     MOZ directs the distal-less homeobox gene expression program during
            craniofacial development
  JOURNAL   Development 146 (14) (2019)
   PUBMED   31340933
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  AUTHORS   Zhou J, Wang R, Zhang J, Zhu L, Liu W, Lu S, Chen P, Li H, Yin B,
            Yuan J, Qiang B, Shu P and Peng X.
  TITLE     Conserved expression of ultra-conserved noncoding RNA in mammalian
            nervous system
  JOURNAL   Biochim Biophys Acta Gene Regul Mech 1860 (12), 1159-1168 (2017)
   PUBMED   29055695
REFERENCE   3  (bases 1 to 2793)
  AUTHORS   Zheng Y and Jia L.
  TITLE     Long noncoding RNAs related to the odontogenic potential of dental
            mesenchymal cells in mice
  JOURNAL   Arch Oral Biol 67, 1-8 (2016)
   PUBMED   26986487
REFERENCE   4  (bases 1 to 2793)
  AUTHORS   Cajigas I, Leib DE, Cochrane J, Luo H, Swyter KR, Chen S, Clark BS,
            Thompson J, Yates JR 3rd, Kingston RE and Kohtz JD.
  TITLE     Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition
            of chromatin remodeling
  JOURNAL   Development 142 (15), 2641-2652 (2015)
   PUBMED   26138476
REFERENCE   5  (bases 1 to 2793)
  AUTHORS   Ramos AD, Diaz A, Nellore A, Delgado RN, Park KY, Gonzales-Roybal
            G, Oldham MC, Song JS and Lim DA.
  TITLE     Integration of genome-wide approaches identifies lncRNAs of adult
            neural stem cells and their progeny in vivo
  JOURNAL   Cell Stem Cell 12 (5), 616-628 (2013)
   PUBMED   23583100
REFERENCE   6  (bases 1 to 2793)
  AUTHORS   Kraus P, Sivakamasundari V, Lim SL, Xing X, Lipovich L and Lufkin
            T.
  TITLE     Making sense of Dlx1 antisense RNA
  JOURNAL   Dev Biol 376 (2), 224-235 (2013)
   PUBMED   23415800
REFERENCE   7  (bases 1 to 2793)
  AUTHORS   Jeong J, Li X, McEvilly RJ, Rosenfeld MG, Lufkin T and Rubenstein
            JL.
  TITLE     Dlx genes pattern mammalian jaw primordium by regulating both lower
            jaw-specific and upper jaw-specific genetic programs
  JOURNAL   Development 135 (17), 2905-2916 (2008)
   PUBMED   18697905
REFERENCE   8  (bases 1 to 2793)
  AUTHORS   Liu JK, Ghattas I, Liu S, Chen S and Rubenstein JL.
  TITLE     Dlx genes encode DNA-binding proteins that are expressed in an
            overlapping and sequential pattern during basal ganglia
            differentiation
  JOURNAL   Dev Dyn 210 (4), 498-512 (1997)
   PUBMED   9415433
REFERENCE   9  (bases 1 to 2793)
  AUTHORS   McGuinness T, Porteus MH, Smiga S, Bulfone A, Kingsley C, Qiu M,
            Liu JK, Long JE, Xu D and Rubenstein JL.
  TITLE     Sequence, organization, and transcription of the Dlx-1 and Dlx-2
            locus
  JOURNAL   Genomics 35 (3), 473-485 (1996)
   PUBMED   8812481
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK132348.1.
            
            On Apr 25, 2009 this sequence version replaced NR_002854.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: HG975391.1, AK132348.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2793              AK132348.1         2-2794
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 42.58 cM"
     gene            1..2793
                     /gene="Dlx1as"
                     /gene_synonym="Dix1as; Dlx1os"
                     /note="distal-less homeobox 1, antisense"
                     /db_xref="GeneID:111970"
                     /db_xref="MGI:MGI:1195983"
     ncRNA           1..2793
                     /ncRNA_class="antisense_RNA"
                     /gene="Dlx1as"
                     /gene_synonym="Dix1as; Dlx1os"
                     /product="distal-less homeobox 1, antisense"
                     /db_xref="GeneID:111970"
                     /db_xref="MGI:MGI:1195983"
     exon            1..312
                     /gene="Dlx1as"
                     /gene_synonym="Dix1as; Dlx1os"
                     /inference="alignment:Splign:2.1.0"
     exon            313..2793
                     /gene="Dlx1as"
                     /gene_synonym="Dix1as; Dlx1os"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
agctcagagatgcaaaaagcctgcggcgctctggaggcgcctggtcctggggacctctttcctccactctgttctcagcataggaagatggggctggggaattctttttggttttctggttttgttttgctctggttttggtcggggttttgtatttttctattcttccttggttttattttttcctttttttcctttttttttttcttttgctttcctgtcattctcccagccaaaagccgccttcgacccttttgatttgatgtagcaaagagtgtgtgtccagattatctgaaatagacactgaagaagctacatagatggtcaagcagggcccggaagaagaccattcaggaaaaagtggtccaggactcggtggatgggctgccggcagaccggtgtggctcagacctggtgactttttggagaggtcgtagaatgaggacagcagacacacgaggaccttgacttcggcgcacagacagtgcaaaaaggagacaaagacggacagaatcaaaaaagagcgtatttccccctcctacgtatttgtttttcctgatagtctcacaaagatgagagtctggtccggtccagcgggttatcttgtggcactggctgtctccagtggctgtgcctgcgctttgaggccactctgctgttcaccgtggcccaaaccagattcgggctgaaaggtcgctgagtcagacttttaggggctccgagaagcagcaagccctctgccttcactgttcctttttcttttatttttagctccccacccccacccctgctcccgctcgtgggctcttctcctcctggcccagggcgtgcgaaaaggtggatgaacctggaggcgggaggggccgggccaagggagacgggcaggaagcgggtgagtgcgaactgataacctcacatcagttgaggctgctgcatagcttcttggtgcgctgagggataccatgatgtatagctggggacgtaggagccagcgctgctgccggagcccttcccagatgaggagttcggattccagccgggtggtaccggtggggagccggcagacaaggctctgccgttcgccagcgcgctgccctccagagctgccccgccttgcttcatcagcttcttgaacttggagcgtttgttctggaaccatatcttgacctgcaggatcgggcgacaacgtgactggactatgaccattgagcctacccaggtccaaggagaaaagggacgggtggacaacaatacccgccctccttgctttgggaaagctgacagctccaggacagaggggcagagaccaccgcctccccacaccccatgagggccaaaggccagaaaattgagccccaggtccagccgctgttggcaacttttagagcagctatcagagccgggaataagagaacaggggagagccaggccttggcttgcaaatgagacgatgccacctgggcgacgtttatggaagacctcatgcagcacaatgcaataacaataaagaaaatttaaaacctagataggaacggggtggggggcgggggcatttgttaaaattagatctcctttcctcgtaggactattggaagaggctacagcgtctttgttaaactctttagactcaaaccaattctcccccccacccccaacggtgtatttgctttccccagctccaacctaaatctagagacagactggccctcgttcgaatgcctaggaactgcccagggtcttagagaagtgcaggaagaaaaaagaaaaatctcactttttttttcccccttcttcttaaggatctggaacttgggaagtgaagggccagagggaaggatctgcctctgccacctcgcaagaagaaggaggtgggggaagcaggcttaggcccaggacctgagtgattagtggcacactttaaaggctaaggaagattaaatcccccttctattgttccagttgttcaggcacgtgtgacctcagaacctccaaacaaaacgtctggggaaatccttccagttccctgcctggtcagaagaccaggtagcctgcaggtcagagagtagggtccgagctagggcaaacagtttgagggaggaagaggagacgctgaaagtcagaggtggatacacacacacacacacacacacacacacacacacgggttggggggcggactgtgacacctagaaccagaggcccagcgaacaaaaaatgtgaagcctggggctggagcccagctcccgaggcttgtttggcagagcggccaggtacctgcgtctgtgtgagtcccaaggaggccgccagctccgccctctcaggcagagctaagtactgagtttgttggaacctccggttcaaagcctgcaactgcaaactggaataaattgtcctgggtttacggatctttttccctttgccgttaaagcgcacctcgccgccttccaccaccgtactcttctcggagtccgcccctggagggacaacagaagcagagacccttgttaatgctgcactgcctttagtgaggagggacgagaatgaatgtctatggatgggttggcagaagtagggtccggaaaagaacgttcaagaaaccctgaaagactgcgaaggtccctcaaggtccgagcgcacgtccctggctgctgcagacagaattgggtcgttcccaagagcgcagctattgcctttgcagagaaagtttgctattttttgcaggcggtagttgaggtttaattacccttaattgcatacattgtttatagcgctacgcaataaataattaccgag
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]