GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 01:36:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_198322               2321 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus zinc finger protein 273 (Zfp273), mRNA.
ACCESSION   NM_198322 XM_138680
VERSION     NM_198322.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Krebs CJ, Larkins LK, Price R, Tullis KM, Miller RD and Robins DM.
  TITLE     Regulator of sex-limitation (Rsl) encodes a pair of KRAB
            zinc-finger genes that control sexually dimorphic liver gene
            expression
  JOURNAL   Genes Dev 17 (21), 2664-2674 (2003)
   PUBMED   14563677
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK078495.1 and BK001639.1.
            
            On Dec 7, 2007 this sequence version replaced NM_198322.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BK001639.1, BC094501.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                AK078495.1         4-57
            55-2321             BK001639.1         1-2267
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 34.8 cM"
     gene            1..2321
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="zinc finger protein 273"
                     /db_xref="GeneID:212569"
                     /db_xref="MGI:MGI:3036278"
     exon            1..81
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..1581
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="regulator of sex-limitation candidate 1"
                     /codon_start=1
                     /product="zinc finger protein 273"
                     /protein_id="NP_938081.2"
                     /db_xref="CCDS:CCDS49305.1"
                     /db_xref="GeneID:212569"
                     /db_xref="MGI:MGI:3036278"
                     /translation="
MEDPLSFTDVSIDFSADECECLDSAQWNLYKEVMLENYSNLVFLGLAFSKPYLVTFLEQSSDPWSMKRKESAAIHLGSKPHKCKECGKAFDRNSVLIQHQRIHTGERPYKCEECGKSFNYSSSLKQHQRIHTGEKPYKCEVCGKAFNCSSYLGKHQRIHTGEKRYRCEECGKPFTNCSGLIVHRRVHTGEKPYKCEECGKAFSVRTTLSKHQRIHTGEKPYKCDECGKTFNVHSTLSKHQRIHTGEKPYKCEECGMAFNVRCILSKHQRTHTGEKPYKCKECGKAFNCSSSLHQHQQIHRGEKLYKCDDCGQAFSCSSYLYKHRRIHTGMKPYKCKECGKAFYCSVNLIYHQRIHTGEKPYKCNECGKAFSICSTFLKHQRIHSGEKPYKCKECEKAFNNCYNLIQHQRIHTGEKPYKCKDCGKAFNYTSSLAQHERIHTGEKPYKCEECGKAFNSSSNLKHHWRLHTGEKPYKCEQCGKAFKNCSGFTRHYRIHTRENSD"
     misc_feature    88..270
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    310..1464
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    322..384
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(322..324,331..333,370..372,382..384)
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(337..339,343..345,349..351,355..360,367..372,
                     379..381,421..423,427..429,439..444,451..456,463..465,
                     505..507,511..513,517..519,523..528,535..540,547..549)
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    406..468
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    490..552
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    574..636
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    658..720
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    742..804
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    826..888
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    910..972
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    994..1056
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(994..996,1003..1005,1042..1044,1054..1056)
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1078..1140
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1078..1080,1087..1089,1126..1128,1138..1140)
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1162..1224
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1162..1164,1171..1173,1210..1212,1222..1224)
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1246..1308
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1246..1248,1255..1257,1294..1296,1306..1308)
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1261..1263,1267..1269,1273..1275,1279..1284,
                     1291..1296,1303..1305,1345..1347,1351..1353,1363..1368,
                     1375..1380,1387..1389,1429..1431,1435..1437,1441..1443,
                     1447..1452,1459..1464,1471..1473)
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1330..1392
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    <1396..1548
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; Region: SFP1; COG5189"
                     /db_xref="CDD:227516"
     misc_feature    1414..1476
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1498..1560
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     exon            82..208
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /inference="alignment:Splign:2.1.0"
     exon            209..304
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /inference="alignment:Splign:2.1.0"
     exon            305..2321
                     /gene="Zfp273"
                     /gene_synonym="6820416H06Rik; Rslcan1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
ttttgcatttgtgattctccaaactctgcggcgttctcaaagttcggacagtgtggcttgttcttcgcgcttaacatggaggaccctctgtcattcacagatgtgtccattgatttctctgcagatgagtgtgaatgtctggactctgctcagtggaatttgtataaggaagtgatgttggagaattacagcaaccttgtgttcctgggtcttgctttctccaagccatacctggtcacatttctggagcagagttcagatccgtggagcatgaagaggaaagaatcagcggccatccatctaggatcaaaaccccataaatgtaaagagtgtggaaaggcctttgataggaactcagtccttattcaacatcaaagaattcatactggagagagaccctacaaatgtgaagaatgtggcaaatcatttaattattcttccagccttaaacaacaccaaagaattcatactggagagaaaccctacaaatgtgaagtgtgtggcaaagcttttaactgttcttcatatctgggtaagcatcaaagaatccatactggagagaaacgatacagatgtgaagaatgtggtaaaccttttactaattgttcaggacttattgttcaccgaagagtacatactggagagaaaccctacaaatgtgaagaatgtggcaaggcctttagtgttcgcacaacactctctaaacatcagagaattcacactggagagaaaccttacaaatgtgatgaatgtggaaagacttttaatgtacactcaacactttctaaacaccagagaattcacactggagagaaaccttacaaatgtgaagaatgtggcatggcctttaatgttcgctgcattctttctaagcaccagcgaactcatactggggagaaaccgtacaaatgtaaagaatgtggcaaagcatttaactgttcttccagccttcaccaacaccaacagattcataggggagagaaactctataagtgtgatgactgtgggcaggcctttagctgttcatcatatctgtataagcatcgtcgaatccatactggcatgaaaccctacaaatgcaaggaatgtggcaaggccttttactgttctgtaaatcttatttaccaccagagaattcatactggagagaaaccatataaatgtaatgagtgtgggaaagcctttagcatttgctcaacgtttttgaaacaccagcgaatacacagtggagaaaaaccctataaatgcaaagaatgtgagaaggcctttaataattgttataatctaattcaacaccaaagaattcatactggagagaaaccctacaaatgtaaagactgtggcaaagcctttaattatacttcaagccttgctcaacatgaaagaattcacactggagagaaaccctacaaatgtgaagaatgtggcaaggcctttaactcttcctcaaatcttaaacaccattggagactccatactggtgagaagccttacaaatgtgaacaatgtgggaaagcctttaaaaactgctcaggctttactcgacactatagaattcatactagagaaaactcagattagtacaaccatgttgcaaagccttccataatcatttactgataattcgacactaaagaattcatatgagaggggaactttagaaatgaaaggaacaagggaagacctttaataatagctcaactcttattcaccctcttccattaaacggaggagaaatcttgtaatgtgaagaagatggctgtaatgaacaatctatacttatgaaacatcaaaattttcattttacagaaaccctgcaaatgcaagtaatgggggaaatgcacactcaccacgagtgaattataatcaaactgtatacatgcataatgactcgggaaggaacactgtcaagtacataaaactgagacaaccgaactcttacagtaagaagcactgtgtacactgtgttgcaagagcacatggatcttaagagatataagagacaaatcccaggagttgtatagaattttagcaaagcaacaaatactgcttataaccggcaggaaaatgtttggcctgatataagaactcattacacactttggatcatgcagataagtctgtgaggacatcagtatgttatcaatccaaattataagctcagtttttacaagtgaaaagatcacaaggactagtgattttatcagaagaacaagactgagtcctgaggtttccgagtccttttttttccccaaagtccatagatacatcattggaatatgaagtttattaatttttgtaaataaaaacaagctgttatt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]