2024-03-29 01:36:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_198322 2321 bp mRNA linear ROD 04-AUG-2023 DEFINITION Mus musculus zinc finger protein 273 (Zfp273), mRNA. ACCESSION NM_198322 XM_138680 VERSION NM_198322.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2321) AUTHORS Krebs CJ, Larkins LK, Price R, Tullis KM, Miller RD and Robins DM. TITLE Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression JOURNAL Genes Dev 17 (21), 2664-2674 (2003) PUBMED 14563677 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK078495.1 and BK001639.1. On Dec 7, 2007 this sequence version replaced NM_198322.2. ##Evidence-Data-START## Transcript exon combination :: BK001639.1, BC094501.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-54 AK078495.1 4-57 55-2321 BK001639.1 1-2267 FEATURES Location/Qualifiers source 1..2321 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="13" /map="13 34.8 cM" gene 1..2321 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="zinc finger protein 273" /db_xref="GeneID:212569" /db_xref="MGI:MGI:3036278" exon 1..81 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /inference="alignment:Splign:2.1.0" CDS 76..1581 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="regulator of sex-limitation candidate 1" /codon_start=1 /product="zinc finger protein 273" /protein_id="NP_938081.2" /db_xref="CCDS:CCDS49305.1" /db_xref="GeneID:212569" /db_xref="MGI:MGI:3036278" /translation="
MEDPLSFTDVSIDFSADECECLDSAQWNLYKEVMLENYSNLVFLGLAFSKPYLVTFLEQSSDPWSMKRKESAAIHLGSKPHKCKECGKAFDRNSVLIQHQRIHTGERPYKCEECGKSFNYSSSLKQHQRIHTGEKPYKCEVCGKAFNCSSYLGKHQRIHTGEKRYRCEECGKPFTNCSGLIVHRRVHTGEKPYKCEECGKAFSVRTTLSKHQRIHTGEKPYKCDECGKTFNVHSTLSKHQRIHTGEKPYKCEECGMAFNVRCILSKHQRTHTGEKPYKCKECGKAFNCSSSLHQHQQIHRGEKLYKCDDCGQAFSCSSYLYKHRRIHTGMKPYKCKECGKAFYCSVNLIYHQRIHTGEKPYKCNECGKAFSICSTFLKHQRIHSGEKPYKCKECEKAFNNCYNLIQHQRIHTGEKPYKCKDCGKAFNYTSSLAQHERIHTGEKPYKCEECGKAFNSSSNLKHHWRLHTGEKPYKCEQCGKAFKNCSGFTRHYRIHTRENSD"
misc_feature 88..270 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="krueppel associated box; Region: KRAB; smart00349" /db_xref="CDD:214630" misc_feature 310..1464 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 322..384 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(322..324,331..333,370..372,382..384) /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(337..339,343..345,349..351,355..360,367..372, 379..381,421..423,427..429,439..444,451..456,463..465, 505..507,511..513,517..519,523..528,535..540,547..549) /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 406..468 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 490..552 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 574..636 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 658..720 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 742..804 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 826..888 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 910..972 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 994..1056 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(994..996,1003..1005,1042..1044,1054..1056) /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1078..1140 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1078..1080,1087..1089,1126..1128,1138..1140) /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1162..1224 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1162..1164,1171..1173,1210..1212,1222..1224) /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1246..1308 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1246..1248,1255..1257,1294..1296,1306..1308) /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1261..1263,1267..1269,1273..1275,1279..1284, 1291..1296,1303..1305,1345..1347,1351..1353,1363..1368, 1375..1380,1387..1389,1429..1431,1435..1437,1441..1443, 1447..1452,1459..1464,1471..1473) /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1330..1392 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature <1396..1548 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]; Region: SFP1; COG5189" /db_xref="CDD:227516" misc_feature 1414..1476 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1498..1560 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" exon 82..208 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /inference="alignment:Splign:2.1.0" exon 209..304 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /inference="alignment:Splign:2.1.0" exon 305..2321 /gene="Zfp273" /gene_synonym="6820416H06Rik; Rslcan1" /inference="alignment:Splign:2.1.0" ORIGIN
ttttgcatttgtgattctccaaactctgcggcgttctcaaagttcggacagtgtggcttgttcttcgcgcttaacatggaggaccctctgtcattcacagatgtgtccattgatttctctgcagatgagtgtgaatgtctggactctgctcagtggaatttgtataaggaagtgatgttggagaattacagcaaccttgtgttcctgggtcttgctttctccaagccatacctggtcacatttctggagcagagttcagatccgtggagcatgaagaggaaagaatcagcggccatccatctaggatcaaaaccccataaatgtaaagagtgtggaaaggcctttgataggaactcagtccttattcaacatcaaagaattcatactggagagagaccctacaaatgtgaagaatgtggcaaatcatttaattattcttccagccttaaacaacaccaaagaattcatactggagagaaaccctacaaatgtgaagtgtgtggcaaagcttttaactgttcttcatatctgggtaagcatcaaagaatccatactggagagaaacgatacagatgtgaagaatgtggtaaaccttttactaattgttcaggacttattgttcaccgaagagtacatactggagagaaaccctacaaatgtgaagaatgtggcaaggcctttagtgttcgcacaacactctctaaacatcagagaattcacactggagagaaaccttacaaatgtgatgaatgtggaaagacttttaatgtacactcaacactttctaaacaccagagaattcacactggagagaaaccttacaaatgtgaagaatgtggcatggcctttaatgttcgctgcattctttctaagcaccagcgaactcatactggggagaaaccgtacaaatgtaaagaatgtggcaaagcatttaactgttcttccagccttcaccaacaccaacagattcataggggagagaaactctataagtgtgatgactgtgggcaggcctttagctgttcatcatatctgtataagcatcgtcgaatccatactggcatgaaaccctacaaatgcaaggaatgtggcaaggccttttactgttctgtaaatcttatttaccaccagagaattcatactggagagaaaccatataaatgtaatgagtgtgggaaagcctttagcatttgctcaacgtttttgaaacaccagcgaatacacagtggagaaaaaccctataaatgcaaagaatgtgagaaggcctttaataattgttataatctaattcaacaccaaagaattcatactggagagaaaccctacaaatgtaaagactgtggcaaagcctttaattatacttcaagccttgctcaacatgaaagaattcacactggagagaaaccctacaaatgtgaagaatgtggcaaggcctttaactcttcctcaaatcttaaacaccattggagactccatactggtgagaagccttacaaatgtgaacaatgtgggaaagcctttaaaaactgctcaggctttactcgacactatagaattcatactagagaaaactcagattagtacaaccatgttgcaaagccttccataatcatttactgataattcgacactaaagaattcatatgagaggggaactttagaaatgaaaggaacaagggaagacctttaataatagctcaactcttattcaccctcttccattaaacggaggagaaatcttgtaatgtgaagaagatggctgtaatgaacaatctatacttatgaaacatcaaaattttcattttacagaaaccctgcaaatgcaagtaatgggggaaatgcacactcaccacgagtgaattataatcaaactgtatacatgcataatgactcgggaaggaacactgtcaagtacataaaactgagacaaccgaactcttacagtaagaagcactgtgtacactgtgttgcaagagcacatggatcttaagagatataagagacaaatcccaggagttgtatagaattttagcaaagcaacaaatactgcttataaccggcaggaaaatgtttggcctgatataagaactcattacacactttggatcatgcagataagtctgtgaggacatcagtatgttatcaatccaaattataagctcagtttttacaagtgaaaagatcacaaggactagtgattttatcagaagaacaagactgagtcctgaggtttccgagtccttttttttccccaaagtccatagatacatcattggaatatgaagtttattaatttttgtaaataaaaacaagctgttatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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