2024-11-01 08:13:16, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_173443 9749 bp mRNA linear ROD 05-JUN-2024 DEFINITION Mus musculus valosin containing protein (p97)/p47 complex interacting protein 1 (Vcpip1), mRNA. ACCESSION NM_173443 VERSION NM_173443.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 9749) AUTHORS Huang,J., Zhou,Q., Gao,M., Nowsheen,S., Zhao,F., Kim,W., Zhu,Q., Kojima,Y., Yin,P., Zhang,Y., Guo,G., Tu,X., Deng,M., Luo,K., Qin,B., Machida,Y. and Lou,Z. TITLE Tandem Deubiquitination and Acetylation of SPRTN Promotes DNA-Protein Crosslink Repair and Protects against Aging JOURNAL Mol Cell 79 (5), 824-835 (2020) PUBMED 32649882 REFERENCE 2 (bases 1 to 9749) AUTHORS Tsai,Y.C., Kotiya,A., Kiris,E., Yang,M., Bavari,S., Tessarollo,L., Oyler,G.A. and Weissman,A.M. TITLE Deubiquitinating enzyme VCIP135 dictates the duration of botulinum neurotoxin type A intoxication JOURNAL Proc Natl Acad Sci U S A 114 (26), E5158-E5166 (2017) PUBMED 28584101 REMARK GeneRIF: BoNT/A catalytic light chain binds to, and is a substrate for, the ubiquitin ligase HECTD2. However, the light chain evades proteasomal degradation by the dominant effect of a deubiquitinating enzyme, VCIP135/VCPIP1. This deubiquitinating enzyme binds BoNT/A light chain directly. REFERENCE 3 (bases 1 to 9749) AUTHORS Totsukawa,G., Kaneko,Y., Uchiyama,K., Toh,H., Tamura,K. and Kondo,H. TITLE VCIP135 deubiquitinase and its binding protein, WAC, in p97ATPase-mediated membrane fusion JOURNAL EMBO J 30 (17), 3581-3593 (2011) PUBMED 21811234 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 9749) AUTHORS Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and Burlingame,A.L. TITLE Comprehensive identification of phosphorylation sites in postsynaptic density preparations JOURNAL Mol Cell Proteomics 5 (5), 914-922 (2006) PUBMED 16452087 REFERENCE 5 (bases 1 to 9749) AUTHORS Dreveny,I., Kondo,H., Uchiyama,K., Shaw,A., Zhang,X. and Freemont,P.S. TITLE Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47 JOURNAL EMBO J 23 (5), 1030-1039 (2004) PUBMED 14988733 REMARK GeneRIF: that p47 ubiquitin regulatory X domain domains may act as general p97/VCP/CDC48 binding modules and that adaptor binding for N-ethylmaleimide sensitive factor and p97 might involve different binding sites COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BC059209.1 and AC158790.5. On Dec 16, 2014 this sequence version replaced NM_173443.2. Summary: This gene encodes a deubiquitinating enzyme that interacts with valosin containing protein p97 and plays a role in the assembly of Golgi apparatus during mitosis. [provided by RefSeq, Dec 2014]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC059209.1, AK122563.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-5179 BC059209.1 1-5179 5180-9749 AC158790.5 147655-152224 c FEATURES Location/Qualifiers source 1..9749 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="1" /map="1 2.08 cM" gene 1..9749 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="valosin containing protein (p97)/p47 complex interacting protein 1" /db_xref="GeneID:70675" /db_xref="MGI:MGI:1917925" exon 1..2933 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /inference="alignment:Splign:2.1.0" misc_feature 149..151 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="upstream in-frame stop codon" CDS 227..3889 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /EC_number="3.4.19.12" /note="deubiquitinating protein VCIP135; valosin-containing protein p97/p47 complex-interacting protein p135; VCP/p47 complex-interacting 135-kDa protein" /codon_start=1 /product="deubiquitinating protein VCPIP1" /protein_id="NP_775619.2" /db_xref="CCDS:CCDS14814.1" /db_xref="GeneID:70675" /db_xref="MGI:MGI:1917925" /translation="
MSQPPPPPPLPPPPPPPEAPQTSSSLAAAASPGGLSKRRDRRILSGSCPDPKCQARLFFPASGSVSIECTECGQRHEQQQLLGVEEVTDPDVVLHNLLRNALLGVTGAPKKNTELVKVMGLSNYHCKLLSPILARYGMDKQTGRAKLLRDMNQGELFDCALLGDRAFLIEPEHVNTVGYGKDRSGSLLYLHDTLEDIKRANKSQECLIPVHVDGDGHCLVHAVSRALVGRELFWHALRENLKQHFQQHLARYQALFHDFIDAAEWEDIINECDPLFVPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLIPAEKCTGRDGHLNKPICIAWSSSGRNHYIPLVGIKGAALPKLPMNLLPKAWGVPQDLIKKYIKLEEDGGCVIGGDRSLQDKYLLRLVAAMEEVFMDKHGIHPSLVADVHQYFYRRTGVIGVQPEEVTAAAKKAVMDNRLHKCLLCGALSELHVPSEWLAPGGKLYNLAKSTHGQLRPDKNYSFPLNNLVCSYDPVKDVLLPDYGLSNLTACNWCHGSSVRRVRGDGSIVYLDGDRTNSRSTGGKCGCGFKHFWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYESDPSLNSNVYDVAMKLVTKHFPGEFGSEILVQKVVHTILHQTAKKNPDDYTPVNIDGAHAQRVGDVQGQELESQLPTKIILTGQKTKTLHKEELNMSKTERTIQQNITEQASVMQKRKTEKLKQEQKGQPRTVSPSTIRDGPSSAPATPTKAPYSPTTSKEKKIRITTNDGRQSMVTLKPSTTFFELQESIAREFNIPPYLQCIRYGFPPKELMPPQAGMEKEPVPLQHGDRITIEILKGRAEGGPSTAAHSAHTVKQEEIAVTGKLSSKELQEQADKEMYSLCLLATLMGEDVWSYAKGLPHMFQQGGVFYNIMKKTMGMADGKHCTFPHLPGKTFVYNASEDRLELCVDAAGHFPIGPDVEDLVKEAVSQVRAEATTRSRESSPSHGLLKLGSGGVVKKKSEQLHNVTAFQGKGHSLGTASSHPHIDPRARETLAVRKHNTGTDFSNSSIKTEPPVFTAASSNSELIRIAPGVVTMRDGRQIDPDVVEAQRKKLQEMVSSIQASMDKHLRDQSAEQAPSDLSQRKVEVVSSVRPVNLQTGLPEPFSLTGGTENLNTETTDSHVADVLGAAFATRSKAQKENSMEEPEEMDSQDAETTNTTEPMDHS"
misc_feature 227..346 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 332..829 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="VCIP135 N-terminal; Region: VCIP135_N; pfam19437" /db_xref="CDD:437269" misc_feature 713..1303 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="OTU (ovarian tumor) domain of deubiquitinating protein VCIP135; Region: OTU_VCIP135; cd22769" /db_xref="CDD:438606" misc_feature order(839..844,1016..1018,1037..1039,1079..1087, 1151..1153,1280..1282,1286..1288) /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="putative polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:438606" misc_feature 1445..1447 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="N6-acetyllysine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); acetylation site" misc_feature 2396..2560 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 2462..2464 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" misc_feature 2492..2494 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" misc_feature 2510..2512 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphothreonine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" misc_feature 2525..2527 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" misc_feature 2546..2770 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="ubiquitin-like (Ubl) domain found in ubiquitin thioesterase OTU1 and similar proteins; Region: Ubl_OTU1; cd17059" /db_xref="CDD:340579" misc_feature order(2555..2557,2582..2584,2675..2677,2684..2686, 2690..2692,2696..2698,2744..2758,2768..2770) /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="VCP interaction site [polypeptide binding]; other site" /db_xref="CDD:340579" misc_feature 3188..3250 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 3203..3205 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" misc_feature 3215..3217 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" misc_feature 3452..3454 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" misc_feature 3563..3646 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 3779..3886 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 3812..3814 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:21183079; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" misc_feature 3839..3841 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q96JH7; propagated from UniProtKB/Swiss-Prot (Q8CDG3.1); phosphorylation site" exon 2934..3020 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /inference="alignment:Splign:2.1.0" exon 3021..9749 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /inference="alignment:Splign:2.1.0" regulatory 5154..5159 /regulatory_class="polyA_signal_sequence" /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="hexamer: AATACA" polyA_site 5179 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="major polyA site" polyA_site 5201 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" regulatory 7940..7945 /regulatory_class="polyA_signal_sequence" /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="hexamer: AATAAA" polyA_site 7960 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" regulatory 8416..8421 /regulatory_class="polyA_signal_sequence" /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="hexamer: AATAAA" polyA_site 8438 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" regulatory 8864..8869 /regulatory_class="polyA_signal_sequence" /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="hexamer: AGTAAA" polyA_site 8886 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" regulatory 9609..9614 /regulatory_class="polyA_signal_sequence" /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="hexamer: AATAAA" regulatory 9618..9623 /regulatory_class="polyA_signal_sequence" /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="hexamer: GATAAA" polyA_site 9630 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" polyA_site 9635 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" regulatory 9723..9728 /regulatory_class="polyA_signal_sequence" /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" /note="hexamer: ATTAAA" polyA_site 9743 /gene="Vcpip1" /gene_synonym="4932442A08; 5730421J18Rik; 5730538E15Rik; mKIAA1850; VCIP135" ORIGIN
tgcggggtggggtggtggccgttacgttcggggcaacggctaaggcagtggagaagtgagaagagaaacaacgtccggcgcttccgccttcgcctaggaggaggaggaactggtaggaaaaggaaagccattcgccctgggcctggactagacctcgtcgggccggcggaggtctggctatgtgcctttgagggtcgcttgggacgccgagcgagagccgagagcgatgtctcagccgccgccgcctcctccgctgccgccgccgccgcctccccctgaggctccgcagacttcgtcgtctctggcggcggcggcttctccggggggcctttcgaaacgaagggaccgaagaatcctttccgggagttgcccggatcccaagtgccaggcgcgcctcttcttcccggcctcgggttctgtcagcatcgagtgtaccgagtgcggacagcggcacgagcagcaacagctgctgggagtggaggaggtgaccgacccggacgtagtgctgcacaatctgctgcggaacgcgctactcggagtgacgggggctcccaagaagaacacggaactggtaaaggtgatgggcctctccaactaccactgcaaattattgtcgccaatattggcacgctatggaatggacaaacaaacgggccgggccaagcttctccgggacatgaaccaaggcgaactgttcgattgcgcgttacttggtgaccgggccttcctcatcgaaccagagcacgtcaacacagtgggctatggcaaggaccgctccggaagcctcctgtatttgcacgacacgctcgaggatatcaaacgggctaataaaagtcaagaatgcctcatcccagtgcatgtggatggggatggacactgcctagtgcatgctgtgtctagggctctagtaggccgagagctcttctggcatgctctgagggagaatcttaagcagcactttcagcagcacctagcccgatatcaagccctgtttcatgactttattgatgctgccgagtgggaggacattatcaatgaatgtgaccctctgtttgtgccacctgaaggtgtccccttaggcctgaggaatatccacatattcggccttgccaatgtgttacatcgtcccataattcttttagattccctcagcggcatgagaagctctggtgattattcagccacctttctacctggcctcatacctgcagagaaatgcactgggagagatggtcatttgaacaagccaatctgtattgcgtggagtagctctggtagaaaccattatattcccttggtaggcataaagggggctgccctgcccaaactacccatgaatttgttacctaaagcatggggtgtgcctcaggaccttattaaaaagtacatcaagcttgaggaggatggtggctgtgttattggaggagacagaagtttgcaggataagtacttacttaggctggttgctgctatggaagaagtctttatggacaaacatggtatccatcctagtttggttgctgatgtacatcagtatttctacagaaggactggggtgataggagttcagcctgaggaagttacagcagctgctaaaaaggcagtaatggacaatcgccttcacaagtgtttgctttgtggtgccctttctgaacttcatgtcccttctgagtggttggctccaggagggaaactgtataacttggcaaaaagtactcatgggcagttgaggcctgacaaaaattacagctttcccttaaacaatttggtttgttcatatgatccagtaaaagatgttctgctaccagactatggattgagtaatctaacagcttgtaattggtgccatggctcatctgtgcgaagagtcagaggagatggctctattgtgtatttggatggagacagaactaattctaggtctactggtggcaaatgtggttgtggattcaaacatttttgggaaggtaaagagtatgacaatcttccagaagcttttcctatcactttggagtggggaggaagagtagtcagagaaacagtatattggtttcagtatgaaagcgatccatctttgaatagtaatgtttatgatgttgcaatgaaacttgttaccaagcactttccaggtgaatttgggagtgagatcctagttcagaaagttgtccacactatattgcatcagactgcaaaaaaaaatccggacgattacactcctgtaaatatagatggtgctcatgctcagagagttggagatgtgcaaggacaagaattggagtcgcagctaccaactaaaattattcttactggacagaaaacaaaaactttgcataaggaagaattaaacatgagtaaaactgaaagaactattcaacagaacatcacagaacaagcttctgtgatgcagaaacggaaaacagagaaattaaaacaagagcaaaaggggcagcccagaactgtttctccaagtactattcgtgatgggccatcatctgcacctgccacccccaccaaggctccctactcacctaccacttctaaggagaagaagattcgaataacaactaacgatggacggcagtctatggttacccttaagccttcaacaaccttttttgagcttcaggaaagtatagccagagagttcaacattcctccatatttacagtgtattcgatatggctttcctcctaaagagttaatgccaccccaggcagggatggaaaaggagccagttcctttacagcacggtgacagaattacaatagagatcttaaaaggaagagcagaaggtggtccatccactgctgcacactcagcccacactgtgaaacaagaagagattgctgttactggtaaactgtcatctaaggaacttcaggagcaagctgacaaagaaatgtactccttgtgtcttttagctacattaatgggagaagacgtgtggtcttatgcaaagggacttcctcacatgttccagcagggtggtgtattctacaatattatgaagaaaactatgggcatggctgatggcaaacattgtacttttccacatctacctggcaaaacctttgtttataatgcttctgaagatagactggagttgtgtgtcgatgctgcaggacatttccccattggtcctgatgttgaagatttagttaaagaggctgtaagtcaggtgcgagcagaggctactacaagaagtagggaatcaagcccttcacatgggttattaaaactaggtagtggtggagtagtgaaaaagaaatctgagcaacttcacaatgtaactgcctttcaggggaagggccattctctaggaactgcatctagtcacccgcacattgatcccagagctagggaaactctggctgtgagaaagcataatacagggacagattttagtaatagttccattaaaacagagcctcccgtgttcacagctgcttctagtaatagtgagcttattcgaatagctcctggagtagtaacaatgagagacggtaggcagattgatcctgatgtggttgaggcccagcggaaaaaattgcaggaaatggtttcttctattcaggcttcaatggacaagcacttgcgggatcaaagtgcagagcaagcaccatctgatctttcccaaagaaaagtcgaagttgtgagttctgtgaggcctgtgaatcttcagactggcttgcctgaaccgttttctttaactggtggcactgagaatttgaatactgaaacaactgatagtcatgtagcagatgtactgggagcagcatttgccacaaggtcaaaagcacaaaaagaaaattccatggaggaacctgaagagatggatagtcaagatgctgagacgactaacacaactgagccgatggatcactcgtgatttaatttagaggctaataaaggcagaatgtttattgtgaatatgtaatatttgttggctgggccacataacttgagtagtcattaaaaatcttgtacgtatataattcaaagattatatcttgttattcagtgcatgatagcaagtgtgtgattggcaatagcttttaatatactgctgcccaggctggctctgaattcttgtaaattagtttagatcttttgaaagggtttcttccagatatgtggttcattggaagttctttgtcatttttaattccatgaaagtcttaatttccagacatgaaaattctcttgttaaatgtttggtttctgcacaggccagaattgaagaggaaatgacagtttgtacacattgttttcaaggtagccgtcctacatttcatgagaatgttgatttcaagtttacctgaactaaatgtatcttaaaatacataaaacactttattagattacttataatattatagagacagctattgttggcaaaaatatcttgacagaagagagtagtgatacaacattttcctgatttgagcaaacttgggaagaaatatctaccctagtatgataaaatcagtgtgattcagttagttggtctgagatatggccagttgtgtgctcttgttgataatatgttgccagtattttttaaatcttggccttgtcaagttccacctattatttttaaaatcttacataaaagagaatggcattttgttttagaatatttaaaaataatggtagcagtagttaatttctaattttcagagtatgtcagagtcacaaagagtttatctgtatgaatggttctatagttttgacacagtggtgtgtaagcctgtatatgctaaatgtctctaagcccctatgaaccaaaaatgttttccttttttcttagtgtccttaagattttctttttgtcagcttcacttgagtttggatgcatagtttactccagtagaccattagcatttgcttatattgctttcatgcttatgtagtaaaaacaatgcatattcctgagattggtactgctcttgtattctgttctgtagatttgtatttgtaaatgtgttttcagtccatcttcctttgtttactgaaattaagttgaatttgaatgaacgaatgacaaatgtatgttaatataatctcttagagcattcaaagcccggctatctctgtttgcacatgtaacagatgcagaactgtttgcaattctacaaaattgtatgtcagaaaatacattatcaggtgtttaaaaaaatctcttcctgttcattcgaaaagaatgttgtacttgaactttttctagataagggaggttttttgtttttttctgtgatagtatctttaagtgagtctacatactgaaagtccactttgttgaatgtggaaggaagggagaatctagatgtttttaaagtggagctgagtttaagataatgtacaccaccacacacacctgggttagtgtttatcacatcatactttgaaatattttatctcattcatttatattaaagttccaggaaaatatataactttcatatactaattttgcatgaagtaagatagccaaattcttaacaattagctgtgctttaatgcccccccaacccctccactaaccactattattttggcttagtcagccactgagatactcttctcaattttttttcctggtttaagtacacaaaaactgctcaataagcagaaaatgtactgtgtcaaataaattatataatcaccctgctttaacagatgctcttctgtggcttggtattttaagttaataactggcaggatctcaaagtaggagtatcagaaacaagttttgttttttccagacatggtcttactactatgtagccttggctggcctggagcccactctatagaccaggctggccttaaaaagagatctgcctgcctccgtctcccaagtgttgggactagaaggcatactataccatgcctggctagagactaattttatctctctattaaatacttgaatttcgtgtaaattatgcacatgtgaatgttagaagatggacttaatctctgacaatacttcattgtctctagtgaccgtagtggtatttagggttagaaacttaattgggtataaagaaaagtttgggttctcccttgatagaaaatacagacaaacaaccaaacaaaaaacaggtttgagaattcatcagaattcttgaacatatttcaaatcagttgaatgagattattagtggtttggggtaaattttgagagagtttgttttaaacattatttgtgtattttatgtgagtgtagatgcatttttaccattgtgataccactgtgctatgtcagggcagcacaatagcttgtgatctcaagtaaaaatggttttttagccctagaagtaacataactgtaacttaaagctattcagttctatttgcagtgttcactgaatactgaagtaatactgtaaatatttttcttcagtaatccattttgtaaccataccaagtttgagttgatgacccgaagtccaggcagttaaaggtagtgtatgtccagaaggctggtaatgaacaattgctcaagttgaaggaaacaagacactgccaagtattatgagtagtatacaattagctccaagggaatggtcactcagaaactaaagaacaagcctatctagccatttcatcttccaccccttaaactatgtttcaggtgtttattggaaataattaggaaagagacctgagaaatttagcaaatgctagtatttgaaatgctttataccttcctatagtctttagtttggtttttacaattaagctttactgcttgcagttgagatagcattctggaatgtacttgtgagactagccacaggtcttacagatctttattgccattattttaaggatcatattcattggatattaacactgtcttaaatagggtctcttacctcagggaagataatttgctagcaactcctatattattattgacaggttttggagaactactttgacatatcacatgttagctaccaaatgcaaaaacaagtattatgtagttacctgctgtctgctactgaacatttctctagatatttagggccctattattaagtaacatttaaatacgaaataaacttctaagttctgtcattagatacttcatgttttcactatagtgatactatatttttttaaatttcagaacattaatatagttttgtcctcatttttcaagtcaatttaatttgcccaaacttaaatactcaaatacaaacaaatcttgagaattttatttttcttgcttcccctcccaccacccttgatctcaaagcaagatttttataagattcttataaaatcagagcccttgcaaaattggtttaaattcctctcattttaaacttagattcaaagttacttttttataacataaatagatgcatattctaggttggctagatgttcaactttccaagactataacaaaattgtacaacatagaggctcttcacagttagattttttttttttttcaaacaagaacagctcatgaaaataggccatggtagtaaaatgtgtatttaagtaacgaaggggagataaatcactaatgtcacagagttaattgcaagttctgccattctttgagatgccaagtgtttcaattcatatttaatgatactcaaatcgtggaaattttaacgtttgttccaaagtagcagaaactgtaaaaaaaaaaaaaattgtgaattattgaagaaaataccattacttgtatacctgacatttaaagtttttaattatggagttgacatgtttttgtagtataataatacaatgactattctcttgtaaaagaaaaggaaaaactagtaaagaaaaagttttagttgatgttatttgcttgtatcaattactagtattttaaaatttaaggtattgcatactttacgctagaatgcagaaatccctcctggagcctttatgcctgttgtagagcaataaaggactgaaaagcttatcaatattttcaggtttgtttgactgagtattagtgctaagaattgaagagtctccttttttggagggaaatgctacttagattaaaacaaagccataatagtataaatatttagacaaaaaactaacaagtactttaacttggcagtgaagtagtatagatgctattatctgtaaggcacaagctgttagacattactttctggtttcatggttgtttagtatatattaaaattgagaataaataattggtagcagtataacagtatagtgtttttgagcacacatcactgtacagtatttgaaattttgtattaatagaaaactaaataatatattccccctcaacttcacattggctttttaaaaagtaatgttctttagtttcctctaattagagtttaataccataatgcatgaacaaatagttcagttttataataacatttttagcataataaagttgtttttaaaacttatggccaggcagtggtggcacacgccttttattccagcacttgggaggcagagacgtgcggatttcttagttcgagaccagcctcgtctacagagtgagtaccaggacagccagggctgtacagagaaaccctgtctcgaaaaaggaggaaaaaaatcaaaaacaaacaaaaacgaaaaacaacaacaaaaaaatgcccatacatatgaattacccaggaactgtaatttctttccttaatgcaggttttaatattagatgaaatgaatccaattataaaaaaaaatatgcaaaatttctctagaaattttgggtcatgtaatgcttactaaatatttcaaaatgagatatgttctaattgagaatttatttttgaaaagagtacttgttatgatgaggatatgaagggaaaatatagaaaacagcagtaaagtcctcatagctcaccactcaactgtccactttgatttatttttaagccttagtttatttatttaatatctattggatcacagtattggatcagtggttagaactgccctagactccagactcgggtccaagtcaagcatacaacctactgtgtaacctctgtatcactcccaagaaggatgataatggcatttatcaatagagctgggaggattgatgagttattacctgaacattaaaaccatgtctggtacagtgtaccttcaaatactttctgtggttagtatgcttttaagttgtggtaagagttcacctgccactgacatgcagtacagccttacatgtaggccatgtgtgttatactcttaaatctaaaacttgttgaatgtgtatagtatgttaccaacgagtagaaactggatatttttacatccaaatatttctatgagggcttaatctcacgaactaccaagaacctggagagttggccttctgtgctttgtgattgagatgtgctatggagcctttaaaggcccataaagctgctgtaaccttgaggtttgcagttgtacctctgttctgttgaccataggtacaatgctgagagtagtgctgaagcaacaggcactgtgaactcagaatgctgagactacagtcacaaacttgagcttgaggtcttctgtgtgtgtgcatgccattgtccatataccatcaagatagagctctcaaaacttcagtcaataaagaagataaacattccacttaagatagttcattactggttttagttttattgactggctgtcataccccagtaagtaaaataaggctgaataattgattgtttctaataattaaaaatgtacagagaaaagttgaa
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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