2024-11-01 08:15:20, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_153178 13793 bp mRNA linear ROD 06-AUG-2024 DEFINITION Mus musculus argonaute RISC catalytic subunit 2 (Ago2), mRNA. ACCESSION NM_153178 VERSION NM_153178.5 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 13793) AUTHORS Huang,Y., Yin,G.N., Liu,F.Y., Fridayana,F.R., Niloofar,L., Vo,M.N. and Ryu,J.K. TITLE Argonaute 2 restored erectile function and corpus cavernosum mitochondrial function by reducing apoptosis in a mouse model of cavernous nerve injury JOURNAL Investig Clin Urol 65 (4), 400-410 (2024) PUBMED 38978220 REMARK GeneRIF: Argonaute 2 restored erectile function and corpus cavernosum mitochondrial function by reducing apoptosis in a mouse model of cavernous nerve injury. REFERENCE 2 (bases 1 to 13793) AUTHORS Li,J., Yao,H., Zhao,F., An,J., Wang,Q., Mu,J., Liu,Z., Zou,M.H. and Xie,Z. TITLE Pycard deficiency inhibits microRNA maturation and prevents neointima formation by promoting chaperone-mediated autophagic degradation of AGO2/argonaute 2 in adipose tissue JOURNAL Autophagy 20 (3), 629-644 (2024) PUBMED 37963060 REMARK GeneRIF: Pycard deficiency inhibits microRNA maturation and prevents neointima formation by promoting chaperone-mediated autophagic degradation of AGO2/argonaute 2 in adipose tissue. REFERENCE 3 (bases 1 to 13793) AUTHORS Sala,L., Kumar,M., Prajapat,M., Chandrasekhar,S., Cosby,R.L., La Rocca,G., Macfarlan,T.S., Awasthi,P., Chari,R., Kruhlak,M. and Vidigal,J.A. TITLE AGO2 silences mobile transposons in the nucleus of quiescent cells JOURNAL Nat Struct Mol Biol 30 (12), 1985-1995 (2023) PUBMED 37985687 REMARK GeneRIF: AGO2 silences mobile transposons in the nucleus of quiescent cells. REFERENCE 4 (bases 1 to 13793) AUTHORS Feng,Z. and Wu,J. TITLE hsa_circ_0129047 Upregulates LYVE1 to Inhibit Hepatocellular Carcinoma Progression by Sponging miR-492 JOURNAL Dis Markers 2023, 6978234 (2023) PUBMED 37810197 REMARK GeneRIF: hsa_circ_0129047 Upregulates LYVE1 to Inhibit Hepatocellular Carcinoma Progression by Sponging miR-492. Publication Status: Online-Only REFERENCE 5 (bases 1 to 13793) AUTHORS Shui,B., Beyett,T.S., Chen,Z., Li,X., La Rocca,G., Gazlay,W.M., Eck,M.J., Lau,K.S., Ventura,A. and Haigis,K.M. TITLE Oncogenic K-Ras suppresses global miRNA function JOURNAL Mol Cell 83 (14), 2509-2523 (2023) PUBMED 37402366 REFERENCE 6 (bases 1 to 13793) AUTHORS Lu,J., Qian,J., Chen,F., Tang,X., Li,C. and Cardoso,W.V. TITLE Differential expression of components of the microRNA machinery during mouse organogenesis JOURNAL Biochem Biophys Res Commun 334 (2), 319-323 (2005) PUBMED 16036130 REFERENCE 7 (bases 1 to 13793) AUTHORS McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and Silver,P.A. TITLE A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain JOURNAL BMC Dev Biol 5, 14 (2005) PUBMED 16033648 REMARK Publication Status: Online-Only REFERENCE 8 (bases 1 to 13793) AUTHORS Liu,J., Carmell,M.A., Rivas,F.V., Marsden,C.G., Thomson,J.M., Song,J.J., Hammond,S.M., Joshua-Tor,L. and Hannon,G.J. TITLE Argonaute2 is the catalytic engine of mammalian RNAi JOURNAL Science 305 (5689), 1437-1441 (2004) PUBMED 15284456 REMARK GeneRIF: essential for mouse development and cells lacking Argonaute2 are unable to mount an experimental response to siRNAs REFERENCE 9 (bases 1 to 13793) AUTHORS Doi,N., Zenno,S., Ueda,R., Ohki-Hamazaki,H., Ui-Tei,K. and Saigo,K. TITLE Short-interfering-RNA-mediated gene silencing in mammalian cells requires Dicer and eIF2C translation initiation factors JOURNAL Curr Biol 13 (1), 41-46 (2003) PUBMED 12526743 REFERENCE 10 (bases 1 to 13793) AUTHORS Carmell,M.A., Xuan,Z., Zhang,M.Q. and Hannon,G.J. TITLE The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis JOURNAL Genes Dev 16 (21), 2733-2742 (2002) PUBMED 12414724 REMARK Review article COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC161581.3 and AC118640.8. On Jul 1, 2022 this sequence version replaced NM_153178.4. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC096465.1, SRR13948564.4563749.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-168 AC161581.3 105098-105265 c 169-364 AC118640.8 34597-34792 365-485 AC118640.8 43049-43169 486-667 AC118640.8 50120-50301 668-804 AC118640.8 52702-52838 805-939 AC118640.8 54074-54208 940-1027 AC118640.8 54628-54715 1028-1175 AC118640.8 55851-55998 1176-1295 AC118640.8 56913-57032 1296-1418 AC118640.8 57163-57285 1419-1552 AC118640.8 57706-57839 1553-1737 AC118640.8 59914-60098 1738-1897 AC118640.8 61666-61825 1898-1988 AC118640.8 64769-64859 1989-2183 AC118640.8 67260-67454 2184-2318 AC118640.8 69341-69475 2319-2420 AC118640.8 72689-72790 2421-2620 AC118640.8 73798-73997 2621-13793 AC118640.8 74146-85318 FEATURES Location/Qualifiers source 1..13793 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="15" /map="15 33.92 cM" gene 1..13793 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="argonaute RISC catalytic subunit 2" /db_xref="GeneID:239528" /db_xref="MGI:MGI:2446632" exon 1..168 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" misc_feature 21..23 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="upstream in-frame stop codon" CDS 147..2729 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /EC_number="3.1.26.n2" /note="argonaute 2; Piwi/Argonaute family protein meIF2C2; eukaryotic translation initiation factor 2C, 2; argonaute RISC catalytic component 2" /codon_start=1 /product="protein argonaute-2" /protein_id="NP_694818.3" /db_xref="CCDS:CCDS37098.1" /db_xref="GeneID:239528" /db_xref="MGI:MGI:2446632" /translation="
MYSGAGPVLASPAPTTSPIPGYAFKPPPRPDFGTTGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 165..2723 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1080..1097 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 1308..1310 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" misc_feature 1323..2600 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature 1719..1847 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature order(1734..1736,1746..1748,1782..1793,1800..1802, 1824..1826,1833..1835,1845..1847,1857..1859) /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature 1908..1919 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with GW182 family members. /evidence=ECO:0000255" misc_feature order(1938..1940,1944..1946,2154..2156,2568..2570) /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="active site" /db_xref="CDD:240015" misc_feature 2097..2129 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with GW182 family members. /evidence=ECO:0000255" misc_feature 2247..2249 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="4-hydroxyproline. /evidence=ECO:0000255|HAMAP-Rule:MF_03031; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); hydroxylation site" misc_feature 2274..2279 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 2406..2432 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 2517..2585 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 2619..2621 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" misc_feature 2631..2633 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" misc_feature 2640..2642 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" misc_feature 2649..2651 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" exon 169..364 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 365..485 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 486..667 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 668..804 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 805..939 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 940..1027 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1028..1175 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1176..1295 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1296..1418 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1419..1552 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1553..1737 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1738..1897 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1898..1988 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1989..2183 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 2184..2318 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 2319..2420 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 2421..2620 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 2621..13793 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" regulatory 11023..11028 /regulatory_class="polyA_signal_sequence" /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="hexamer: ATTATA" polyA_site 11045 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="major polyA site" regulatory 13764..13769 /regulatory_class="polyA_signal_sequence" /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="hexamer: AATAAA" polyA_site 13793 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" ORIGIN
gccgccccggccgcgtcgggtaaacctgttctgcgaggcggccgcgccggggcggatcgagcggccggcggctcctcgcggctcgcggcgtcggggcccgtggagcgcgcggccggccctcggccgcggccctcggcaacgccaccatgtactcgggagccggccccgttcttgcttctcctgctccgacaacatcacccatcccaggatatgccttcaaacctccacctcggccggacttcggcaccaccgggagaacaatcaaactacaggccaatttctttgaaatggacatccccaaaattgacatctatcactatgaattggacatcaaacctgagaaatgccctcggagagtgaacagggaaattgtggagcacatggtccagcactttaaaactcagatcttcggggaccggaagccagtgtttgatggaaggaagaatctgtacacagcaatgccccttccgatcggcagggacaaggtggagctggaggtcacgctcccgggagaaggcaaagatcgcatctttaaggtatccatcaagtgggtgtcgtgcgtgagcctgcaggcgttacacgatgcactttcggggcggctgcccagcgtccccttcgagacgatccaggccctggacgttgtcatgaggcacttaccatccatgaggtacacccctgttggccgttccttcttcactgcatctgaaggctgttccaaccctctgggtgggggcagagaagtgtggtttggcttccatcagtccgtccgaccttctctttggaaaatgatgctgaatattgatgtatcggcaacagcgttttacaaggcacagccagtgatcgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaatcaaaggtctaaaggtggagataacgcactgtggtcagatgaagaggaagtaccgtgtctgcaatgtgacccggcggcctgccagtcaccaaacgttcccactgcagcaggagagtgggcagacagtggagtgtacagtggcccagtacttcaaggacaggcacaagctggttctgcgctacccccacctcccgtgtttacaagtcggacaggagcagaaacacacctaccttcctttggaggtctgtaacatagttgctggacagagatgtataaaaaaattaacagacaatcagacctcaaccatgatcagagcaactgccaggtcagcacctgatcgccaagaggagatcagcaaactgatgcgaagtgcaagtttcaatacagacccatatgttcgtgaatttggaatcatggtgaaagatgagatgacagatgtgactgggcgggttctgcagccgccctccatcctctacgggggcaggaacaaagcaattgccacccctgtccagggtgtgtgggacatgcgaaacaagcagttccacacgggcatcgagatcaaggtgtgggccatcgcctgcttcgctccccagcgccagtgtacagaagtccatctcaagtccttcacagagcaactgaggaagatctcgagagatgctgggatgccgatccagggtcagccctgcttctgtaaatacgcacagggtgcagacagtgtggagcccatgttccgacacctgaagaacacatacgctggcctccagctggtggtggtcatcctgcctggcaaaactcctgtgtatgcggaagtcaagcgtgtgggagacacagtgctggggatggccacacagtgcgtccagatgaagaacgtgcagaggaccacgccacagaccctatccaatctctgcttaaagatcaatgtcaaactgggaggcgtcaacaacatcctgctgccacagggcaggcctccagtgttccagcaacctgtcatcttcctgggagccgatgtcacccacccaccagctggggatgggaagaaaccttctattgctgccgtcgtgggcagcatggacgcacaccccaaccgctactgtgccaccgtgcgcgtgcagcagcaccgacaggagatcatccaggacctggctgccatggtacgagagttgctcattcagttctacaagtccacccgcttcaagcccacccgcatcatcttctaccgcgatggcgtctccgagggccagttccagcaggttctccaccatgagctcctggccatcagagaggcctgcatcaagctggagaaggactatcagccaggaatcacgttcatcgtggtgcagaagcggcaccacacacgcctcttctgcacagacaaaaatgagcgggttgggaagagtgggaacattcccgcaggcacaaccgtggacacgaagatcacccaccccactgagtttgacttctacctgtgcagtcacgccggcatccaggggacaagccgtccttcccactaccacgtgctttgggatgacaatcgtttttcttctgatgagctgcagattctgacctaccagctgtgtcacacctacgtgcgctgcacacgctctgtgtcaatacccgcgccagcttactatgctcacctggtggccttccgagccaggtaccacctggtggataaagaacatgacagcgctgaaggaagccatacctctgggcagagcaacgggcgagatcaccaagcgctggccaaggcggtccaggtccaccaggacacactgcgcaccatgtactttgcttgacctgttgtattgtttagcgattgtgtaccaagttggattcacacgagaccagctacactcagaccaacagatgcccagcccttctgtgacagccagcatcgaacatgagacgtctttggttttattagatcctccgttttccagaatgccttccgtcccagatgtcagacttggattttgagctgcaggcctgtatgagaccccagtgtaggaaacatggtttgccaaacctataagctgctcactgagagtcccgtttcctaaaaacaaaacaacaacaaaatgtcctaaaaccagtctatgaactctcagggctttaaaacactttaatttatttggtcatccaatttacttgtttttaacacctgattctcactgaaaccgatgggctccatctagctgtgaaggctctgagcatgaaagccacaccatttccattggggttttaaagcctggccctaagaagttgtcactaatgttgagttctaagggatgccatgcgccctgcagccccagggcgtatggctgctaggtctccacagtgtctctcgaggtcactgcctgccctcgaggcctgaacaaaggcacagtggccaaggagatggtcacgtgtgtttacggcagtgacaagtccgagagattggcagacaagtgccattttgataaaaatttatttaaaaagagaaaaaaagacaatatactgacagtctaatcataagatttgtcctgtaggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttaatgtctttaatgtaagagaagaatatatgtatctggtttgcagtattaatgtggtaggtagatgctgtttccctttcgttgacgaggggcgcttcttgtgacctgcttcacatatcaggagctgtgtggagcctggagacagtccacctcttgtggcttttagtgcttaagtagaggaatatgcaactggcttcatgtaccagcgatgccccctcctccctccccacccccagtgtggactgtgtagcctgtacctctggaaggacagtgcgcttgccagtaacctgccgtcctccctgcctcgtccatgtgtgtcgctcagccgatgaagcacaaatggaatttatttattcttccattgctgggaaacaagttcacgtaagagtgcacttctctcagtgtgcagttatggaaggtgggtttcataggatctatgcactgaagtggagagagagctgcccatagcggctctgccagcatgggactggcaggtaggaatggactgtgcccgaggacctgaccgtgggcaaggccagcagggaaggcacagactttctctgggtgttgtttgcttctgggccccagtgtgggttttccagcccagagaccattgaactgagaaggggccactacgagtggctctgcggatggcagcagccacgtcagtgtgtgtgtcctgtggggctttctgtgcttgtcccgaagctgagcaagcatcgggctcgctccgttccacatacgcgtgcgttcccagaaggagacgagccttctcttgtgtgctgctctgtgctctgtgggttttttctacccctgctgatgggcctcatcccccagctctgcgtcatttacctctgaccctgtggaggagggagggtgcccaccctctcccctgccatggcacctcatgctagaggacacagtaccacctttgccccgttccccatctgctctggagctggtgggaagggcagacgcagttacctgggaagtcacaccctcagcaggtgtgtgtatccgtgtatgcatgtgggtgtcttactaatgacaatagtctcttcttgctgtgtctttagaaatcttttaaagtaacaggaccccccctcccccccagtctaagaagcactgggactgcctgctatcccattggcaagtggcaccttctcaaactgtttccaaaacgatagaaaaacactcagttggcctaacatggtcaggctagggaactggttaaactagtgaacttttagaatctgaaattggattgttttcaaccattcttagaaccgcgtgtttctaaggtgtgtcttcagccccttgccatgggatcttagtcatgcaagtgagttttttagaatgcagattctcacctgctgccagcttcttggatctggcactgtgttcgaggccacccctcaacccccaccgtggctctgtaggcgctttctgaggccgtccccccttatgatgccagggggacaggaaggaacccctatcagagctcacacctaggaacacttgtgggctggggcaaaaaatcttgagctgggagttttgttttgatcaccttgaaggataggttttctttctgatgggccaaagtactggaagcaaagtactttctgtagtagcccatgcttacttgtgacacttttaatatgaaatgtatccccagaccaaatgtccctaattgagttagatacacaccatttacatgtctgatggtgcagagctcataaatggctatagttccaatttctcaggtaaataattttccccaattcccgccctccccttattattaagattagtttcgagacagtgtgagacctcagagtgcggtagcagctccggccatcttctgcaggagccagctttttgtgtgtatctgtacccaagactggtgacaggtgccgttttctcctgaggtgatacctggccaagtttgacgactgcccacttgctagctgtgttcccaaccccactgttaagtaaggtgtgccttgctttaagcaaactgaatgtgattgtgttgtgctctgtatccatttggaaggaaaactaggatgtgcctgtctctttaagagaggctacccaattagcctttcatggtgggactctcctagtagtacactgtaagatactcactcttaaaaacccatcatgacatccatccctttaccactgtgtgcaccatgcagcaggtccctccctccccaagctgatgaagcaatgcaaaactctagagagacatcgaggccccattccatagatttagcccttagtgatactagcaaaactcccaccctgtcactgcgtgttttaagcccagattctcctagtccccatcaagtctgaaaccgagcacgcctgtacttctagtcaggggctgttgggttttggcttccttctcccttttggggaaatcctcacatgcacacttgataccactttgggtctgctctgccttctccagatttggcctcttggccactcctcacacccacccgcttgctggcctccaggccacagggcactgccagtgaggagactgctagctccgtgctgtctgcagctggcccaacatctgtatcctaatgtttacctgtcaccgagcggcgcttgatagaaagatggcccctgcagcgggcttgggcaggtttggtttttttggttttggttttgtttttccattgtcttgttcttgtgttattttattggctttaaatgcaaatgttgctatttattttttcctctctctcctgctctggtttgactaagctgatctggctatcccaatgcatgtggtacctgatagatggatatggtagagattatttcccctgccttttataactgtcccagtgtttaccttcaggcttgctaatgctttatttttggaagccacagatgtagtttttctggatgaattgcttttcctatagatgcagcggtatgcttttgcattgatctgcagggtgatttgaattttatttttacaagcagtttttcaatcaaattctatatttgatacaatgtgttaaggttagaccagcccgaagtcatgcagctggggacccctgagtgtccaggaggccttagggctgggtggcctctcttggtagtccctgtggtggtagcactggtcacaggaacctgcagggtccttcagcatggccctgaactcttggattgttacaaggattttttttttttcatgggcattttgctacacagacagtggacaatcccggtggccccagacaagccataagcaacctttctgtgacctccccctgactcatctctcacacccatgagaaaaggaatgtgccctgagtagaagctacacttccttggtgttcatctgcctcacttgtgaatgcagatattttgtttgttttaagcccttccctgcagtaaccatgctggctggctctcacataggcagagcacacgtgactcttgtcacaagcgccccgttgcaggcatgccgactcctgtaagttgcactgatctctcaacagtttcctttattgcgtccaactccccatctgctgtactcatttgaagtgattgtaaacagattcacagtggcaagagtgggacattgcctcacgtctgccatcccaacacacatttcagtattacatgctcgagtgtgcgggctgggctcttactctctcgagcattgtgggctagccttgtctcaacactctgacaagaagttctccctctctatacaggacagcatgctctttgagacctgaaggcttgaatgtaacagattagttaggagtctttgtggcgctttggtctgtttagttttcttgtgatctgcaaggccccccaaaagtatgtccttctagttccgtgtggcctttgtcagcatggacagcatatgaatagcccagtcagtgttaacaggccattgctacattctttggtcagcccctcaacttaaagttgtgaggtcactgctgtgtcagactgtcatttgtggtccatccatgggagacctaaagcctggtgcagccctttatgccatgtgaccttgctgggacctaagtacatggtctgtttagccccacgtggactgtctgtagtcagggtgcccagagtctgaaacaaaaggaattattacactcaaaccgcgggggaggggggtactggggacggacggacagacagacagacagacagacagacagacagacagtgccattgcagacattgcagagccctccctcaccttgtgtctttggatttgttcagccattttatttgtctcaagttgaatgtaccggcttagccaaatcactacagaaggtggtttctttaaaccttttagacagatgcataaaagctacctctgacttctcatagatttgtgtttgctctgaagcatcgctatccacactgaatatagccaaaatatcgcctgaataaaccgagttacgaactcctctgttcagttctggcttgaaaatgtgtgagtgccatactgtgatctggggccgcagctcctctgctgccactgacccagggactcctcagcaccacccagctgcaagatcctagcgtccgagaggctggtagactggcttctctgcatggggaacgtgcaccctccaggctggcgggcgtgactgcgcagggccgcgtgcggctgagcctggagatggtctgttcctgcctggctttgctttcctgttgaatcgtgtaagaaggcatctttacccctgcttctgaatggattgaaagtggctttcctgctctctcctccctttttgtacactataaactcataaaggtgcttcaacaccgactcttgtgcagataatgtagttaagcagttgcatggattcagatagtgcaggcacagctgaccttgggaccctggtgaaagtgaaggactgaaagccctgcgctccatttggaaggagcaatgggctctgcttgactagaaggtccctttagtgttggcagaacagagatttgtcatggggacctgccacctctgaccaagctgtcctgtggctgtctgctttgctgtccaggaggtcatcctcttacatcatggctccacctgcatctccttggcctctccacctaaagtttccttggaaagtcagcataagatcccagatttccctgtttagcttgagggacagatggacagtaccatgaagggacagattgacagtgtcgtgaaggtcggtgcctggggattgggctgggcttaggggagctcttctaaaggttgtctctgcgccctccccaacctcccccacatacacccccattgtattgttttggggggtgtcatcttccattcttttgacttggacagctcagtacccttaagagccctcacatatttctctgtgtagagaacctgaggcgtggagggtggtggggtgtctgcaacacccctgacctgcaccccaggttacttaaatcccctgacttggctggaatttgaaaatccagggaagcacagggtgctagatatgttacacttagggtcacacccaggtgccgtggtgtaagccacagccctcagggcaccagcacagaggcagccagcctccccactcgtgacatttgggaaggatactaaacaagccagagccctggccgctgcagtattcagctaacacttctttttcccggttgaaaggagaacactatttgaaaccttctaatgccctggtggttctagttcctccgttcctgagggctaaaaggttgaatgagctcctgttttgcttagagctgcctttatttgagtccatttaaaggtgaagcacgggactgtctcctctccctgagtcaccagcaagtaggtgcggagacccttctcattcagtcctttctgtatcttcaagcgccccaacatcagtgggatcacgagagcacccacatcagccatcagtggagtcaagtatacatatggggacagaaattggcaaatttacaggttgtaatggccactccagcctgtgacagggcaggccctccatcctgcacagcaggtggcctctgtcctacctccaggcactggctttactatctggacacctagttgagagccttgaaagtctgttcttggtgtccttttagaatcatgctggggctggtcgttagttgaccctgcccagaagctgtcagccctcagctctttcttgcaaactgtgatgccaccttgtagcctacggctgtggagccccgtcctgggttctttgtgccctgaaatgcaggtgcacctctgctgggggttggtggggcactggcaaaggctacttgctggccttgtgttctctgcccctcagcaagactgtctgttgtagtggaagtaggtttagagggatttggaatcatgtctttgtgaatcgagtgtgacgtcatcaggggtacggtgctacttggtcctaatgttttggaatgcttttccgtcgttgttactccattgttactctctgttctatgacactgagggagactgctcacttaggtgtggtgtcacataggactccagctttgatgtgctgtgcgggtggtgtgattatcatctctgaccttctgaagccaggggtggtacccatccctagctcagtctaattaaatctttcctccctgtcaagtgattgctttgggtggttttaacaggagtagtccagtctggatattctattttcttaattacatagaaaaggcccgtgcagcactagctgcagacagataacacatttaacaattttggttcctcttcaaagccaaatagacctatgttgattaaactccaagagggtacaattcagcattaaattaaaatttgagttgtgaatttgagagggaatttcagtatagttgataaagttaagtggcaagtgagtatttataaaagttataagagaataattgtaagtttctgtacaacaatttggctactgcctcataaatacaggaagagaccgtagccctgaatccgactctctcacctcccacataccttggactacctgcctaatatgtatttgagggggtttaacccttggttttatcaaattttctagttttattttatttttataaaataattgaaaaagaaccaaaaaggaatccagaagttccccagtggctcctcccccagtcttaatcccctcccccccacacacacacacacactcaaatgttttagaagacattttgaatcaaaatgtattccacccatttaacgtttgctactttctgagaagtggagtggctacgagggcctgtttcagatggtactctgtatgtcatggacatgtttgtacctgtacagtggatctgtgtgacgacgtcttgtgcttgcggtttagaaaccacgcagtgctgttttgtaaattgacagtttctgtgtaaactattatttatatcccttggcccctctgtataatttttcatttgctacatggattgtataattaattataaaattatagtacctgctaaacccaattctgaggcttcatgtcattgtctttggtttgataccagtctgatcgggaggctgcccaggccttgcgcaataccagtagtgatgttacttaaagttaagccttaatcagacagtgaatttgtgcatttcagagtatgcaaaaaaaaaaaaaaaaaaaaaagcagagtgagtttcaactgcccaggtcaagatgttcaaccctaactaacaggttccttctggagtgaaaaagtctaatgggttccctctggggtgaaaaaagggccgttacccgggttacactcttccctcccacctgcgctctcccatgtggcgtgatgaaactgatcgtgtgcatttctgtggcagtctatctagagacctttgcagggttgtcttcaaatgtctggtttctctcctctggtctgtgacgagcgagcgtctactgccgggagcacagctggggcgtaggtttcaccaacctgctcagcggccaagctctccgctgttactgccacctgctattgcttctgcatagattataacagatttgtgtcgggtaaaagcatcttcaatcttgaggtaaattagaggggacccagctttcttttacaatgtggatctacctcagttaaacagttgggtgctattaactaagtctgtcaaattaaattggaaagtaaccaaacagtgggacataactaactccacgtgaaacttgaagacatcatttccgtttctttaataatactttttatttattttgtgccttttatgttaaccctaatgcgttttttaaaattcagaatagtcatttttctcttgcgtgtggggagcccaactgaccatacaagcagccatctaactgctagagtatactgggatcctaacctaccctcttgggaaacggagggggaaaatgtgtccaagagcaaatttcacacatcacataccccagctcttacatgcttaccttcatagctttcgcttcatttctgtgccatctgaaggggcaacccccaaaactgacactcgagtgctttgtctctgctttttcagctgtccgtgtctctcttctctggcatgttttctataagactttctttcataaacagcaagtggactgttgtcgatcccatctcctggcttgcacagtgaaggtgctaaacgccaggagcagaggcgggggcaagctcacggttgtctggaggccaggccggaggcggggaggatgtgcacgatgcggcagcccgcggtttatgaagtcaggaacactctggtaagaaaataagatcggagatcgataactttccatgcctttatatttggcagtttacaacttttcctactacggcaacctttttgccataattctttggaggtaacacaatattttgaagtcttatgaatttgattttataccagtgagaagtcaaagttttagcggtctttcctgtagtgtatggttttactcttttaaagtcatctctggattttagaagagaacctattgtacttggtggctccaaaaggtgatttggggagccctgtcccttcccttcttgctctgctcccccccccccctttccctttgcagggtctcaaaaaaggaaaacaagaaaaaaaaatgatggttctagttagatttgtgggggttttttattgttggtttttttttttaagcttccatcaggttgatacttaagctatattttatagaataaatccccctttagtatgctgcatatggatatgaagctcagagctgttgcactttctctgtaatcaatgccctccaactggctcgctggaagcattttcttttaacctaatgtgtactttgggcaggtgatgaaatttacacaggtacctcaagtcaagacctgcgcgtgctgcatttggatttttggttttgttttgttttgcttttctatgtatcattatgttttacttaattttgttctggtgttatgctttttggaccccaatagtctgttgaaagaaaaacctaaaaagttagtatccttgttttctcccccctgcagtatgtggttctaaaggtcaccccccccccccattaggaatctcccccaagcacacccgaggaaaagggtacgacgggcgcttctcagcgggccgtgccattgagatcttttatattcatgctgcttctagtcccttctccacatcacctaagggtgggtacctccattgcgatgttgtggcatcttaacttttacacacagacctcatgggtgtccactgaggaagtagtatgagcctaaagacactggcagcgtgcagcctggcctgggagtggcggccttcgcatctctctctctctcagcactcagccacgctgacctggccgggtggtccgcgtggacaggacagctggtgaagcaagccggatgctcagaacactgcgcgtctcctgtcctgttttaagcttagctgggtcctttgttttcacagcttcctaggttaaatagtttgcactatttttgcaataaattcatgggaaacctaatggctacttatgttgttgttcttactgtgtgtataaactaacactaaaggtttgctatagtgttttcttttcacctccttatgtagccccataacatgcacagaatgctgtaaacctgattaagatatgatgtggatattttataaagttattttgtatggtgtcgattttgttttgccgcatagtgtgtcagcaaaaaataaaataaaataaaattcctcgtatttacagctgccta
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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