2024-05-19 06:56:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_153178 13793 bp mRNA linear ROD 08-NOV-2023 DEFINITION Mus musculus argonaute RISC catalytic subunit 2 (Ago2), mRNA. ACCESSION NM_153178 VERSION NM_153178.5 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 13793) AUTHORS Feng Z and Wu J. TITLE hsa_circ_0129047 Upregulates LYVE1 to Inhibit Hepatocellular Carcinoma Progression by Sponging miR-492 JOURNAL Dis Markers 2023, 6978234 (2023) PUBMED 37810197 REMARK GeneRIF: hsa_circ_0129047 Upregulates LYVE1 to Inhibit Hepatocellular Carcinoma Progression by Sponging miR-492. Publication Status: Online-Only REFERENCE 2 (bases 1 to 13793) AUTHORS Li Z, Jin T, Yang R, Guo J, Niu Z, Gao H, Song X, Zhang Q, Ning Z, Ren L, Wang Y, Fan X, Liang H, Li T and He W. TITLE Long non-coding RNA PFI inhibits apoptosis of alveolar epithelial cells to alleviate lung injury via miR-328-3p/Creb1 axis JOURNAL Exp Cell Res 430 (1), 113685 (2023) PUBMED 37330182 REMARK GeneRIF: Long non-coding RNA PFI inhibits apoptosis of alveolar epithelial cells to alleviate lung injury via miR-328-3p/Creb1 axis. REFERENCE 3 (bases 1 to 13793) AUTHORS Fan B, Chopp M, Zhang Y, Wang X, Kemper A, Zhang ZG and Liu XS. TITLE Ablation of Argonaute 2 in Schwann cells accelerates the progression of diabetic peripheral neuropathy JOURNAL Glia 71 (9), 2196-2209 (2023) PUBMED 37178056 REFERENCE 4 (bases 1 to 13793) AUTHORS Shui B, Beyett TS, Chen Z, Li X, La Rocca G, Gazlay WM, Eck MJ, Lau KS, Ventura A and Haigis KM. TITLE Oncogenic K-Ras suppresses global miRNA function JOURNAL Mol Cell 83 (14), 2509-2523 (2023) PUBMED 37402366 REFERENCE 5 (bases 1 to 13793) AUTHORS Kshirsagar A, Doroshev SM, Gorelik A, Olender T, Sapir T, Tsuboi D, Rosenhek-Goldian I, Malitsky S, Itkin M, Argoetti A, Mandel-Gutfreund Y, Cohen SR, Hanna JH, Ulitsky I, Kaibuchi K and Reiner O. TITLE LIS1 RNA-binding orchestrates the mechanosensitive properties of embryonic stem cells in AGO2-dependent and independent ways JOURNAL Nat Commun 14 (1), 3293 (2023) PUBMED 37280197 REMARK GeneRIF: LIS1 RNA-binding orchestrates the mechanosensitive properties of embryonic stem cells in AGO2-dependent and independent ways. Publication Status: Online-Only REFERENCE 6 (bases 1 to 13793) AUTHORS Lu J, Qian J, Chen F, Tang X, Li C and Cardoso WV. TITLE Differential expression of components of the microRNA machinery during mouse organogenesis JOURNAL Biochem Biophys Res Commun 334 (2), 319-323 (2005) PUBMED 16036130 REFERENCE 7 (bases 1 to 13793) AUTHORS McKee AE, Minet E, Stern C, Riahi S, Stiles CD and Silver PA. TITLE A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain JOURNAL BMC Dev Biol 5, 14 (2005) PUBMED 16033648 REMARK Publication Status: Online-Only REFERENCE 8 (bases 1 to 13793) AUTHORS Liu J, Carmell MA, Rivas FV, Marsden CG, Thomson JM, Song JJ, Hammond SM, Joshua-Tor L and Hannon GJ. TITLE Argonaute2 is the catalytic engine of mammalian RNAi JOURNAL Science 305 (5689), 1437-1441 (2004) PUBMED 15284456 REMARK GeneRIF: essential for mouse development and cells lacking Argonaute2 are unable to mount an experimental response to siRNAs REFERENCE 9 (bases 1 to 13793) AUTHORS Doi N, Zenno S, Ueda R, Ohki-Hamazaki H, Ui-Tei K and Saigo K. TITLE Short-interfering-RNA-mediated gene silencing in mammalian cells requires Dicer and eIF2C translation initiation factors JOURNAL Curr Biol 13 (1), 41-46 (2003) PUBMED 12526743 REFERENCE 10 (bases 1 to 13793) AUTHORS Carmell MA, Xuan Z, Zhang MQ and Hannon GJ. TITLE The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis JOURNAL Genes Dev 16 (21), 2733-2742 (2002) PUBMED 12414724 REMARK Review article COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC161581.3 and AC118640.8. On Jul 1, 2022 this sequence version replaced NM_153178.4. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC096465.1, SRR13948564.4563749.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-168 AC161581.3 105098-105265 c 169-364 AC118640.8 34597-34792 365-485 AC118640.8 43049-43169 486-667 AC118640.8 50120-50301 668-804 AC118640.8 52702-52838 805-939 AC118640.8 54074-54208 940-1027 AC118640.8 54628-54715 1028-1175 AC118640.8 55851-55998 1176-1295 AC118640.8 56913-57032 1296-1418 AC118640.8 57163-57285 1419-1552 AC118640.8 57706-57839 1553-1737 AC118640.8 59914-60098 1738-1897 AC118640.8 61666-61825 1898-1988 AC118640.8 64769-64859 1989-2183 AC118640.8 67260-67454 2184-2318 AC118640.8 69341-69475 2319-2420 AC118640.8 72689-72790 2421-2620 AC118640.8 73798-73997 2621-13793 AC118640.8 74146-85318 FEATURES Location/Qualifiers source 1..13793 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="15" /map="15 33.92 cM" gene 1..13793 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="argonaute RISC catalytic subunit 2" /db_xref="GeneID:239528" /db_xref="MGI:MGI:2446632" exon 1..168 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" misc_feature 21..23 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="upstream in-frame stop codon" CDS 147..2729 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /EC_number="3.1.26.n2" /note="argonaute 2; Piwi/Argonaute family protein meIF2C2; eukaryotic translation initiation factor 2C, 2; argonaute RISC catalytic component 2" /codon_start=1 /product="protein argonaute-2" /protein_id="NP_694818.3" /db_xref="CCDS:CCDS37098.1" /db_xref="GeneID:239528" /db_xref="MGI:MGI:2446632" /translation="
MYSGAGPVLASPAPTTSPIPGYAFKPPPRPDFGTTGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 165..2723 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1080..1097 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 1308..1310 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" misc_feature 1323..2600 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature 1719..1847 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature order(1734..1736,1746..1748,1782..1793,1800..1802, 1824..1826,1833..1835,1845..1847,1857..1859) /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature 1908..1919 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with GW182 family members. /evidence=ECO:0000255" misc_feature order(1938..1940,1944..1946,2154..2156,2568..2570) /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="active site" /db_xref="CDD:240015" misc_feature 2097..2129 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with GW182 family members. /evidence=ECO:0000255" misc_feature 2247..2249 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="4-hydroxyproline. /evidence=ECO:0000255|HAMAP-Rule:MF_03031; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); hydroxylation site" misc_feature 2274..2279 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 2406..2432 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 2517..2585 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 2619..2621 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" misc_feature 2631..2633 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" misc_feature 2640..2642 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" misc_feature 2649..2651 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q8CJG0.3); phosphorylation site" exon 169..364 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 365..485 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 486..667 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 668..804 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 805..939 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 940..1027 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1028..1175 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1176..1295 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1296..1418 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1419..1552 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1553..1737 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1738..1897 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1898..1988 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 1989..2183 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 2184..2318 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 2319..2420 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 2421..2620 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" exon 2621..13793 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" ORIGIN
gccgccccggccgcgtcgggtaaacctgttctgcgaggcggccgcgccggggcggatcgagcggccggcggctcctcgcggctcgcggcgtcggggcccgtggagcgcgcggccggccctcggccgcggccctcggcaacgccaccatgtactcgggagccggccccgttcttgcttctcctgctccgacaacatcacccatcccaggatatgccttcaaacctccacctcggccggacttcggcaccaccgggagaacaatcaaactacaggccaatttctttgaaatggacatccccaaaattgacatctatcactatgaattggacatcaaacctgagaaatgccctcggagagtgaacagggaaattgtggagcacatggtccagcactttaaaactcagatcttcggggaccggaagccagtgtttgatggaaggaagaatctgtacacagcaatgccccttccgatcggcagggacaaggtggagctggaggtcacgctcccgggagaaggcaaagatcgcatctttaaggtatccatcaagtgggtgtcgtgcgtgagcctgcaggcgttacacgatgcactttcggggcggctgcccagcgtccccttcgagacgatccaggccctggacgttgtcatgaggcacttaccatccatgaggtacacccctgttggccgttccttcttcactgcatctgaaggctgttccaaccctctgggtgggggcagagaagtgtggtttggcttccatcagtccgtccgaccttctctttggaaaatgatgctgaatattgatgtatcggcaacagcgttttacaaggcacagccagtgatcgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaatcaaaggtctaaaggtggagataacgcactgtggtcagatgaagaggaagtaccgtgtctgcaatgtgacccggcggcctgccagtcaccaaacgttcccactgcagcaggagagtgggcagacagtggagtgtacagtggcccagtacttcaaggacaggcacaagctggttctgcgctacccccacctcccgtgtttacaagtcggacaggagcagaaacacacctaccttcctttggaggtctgtaacatagttgctggacagagatgtataaaaaaattaacagacaatcagacctcaaccatgatcagagcaactgccaggtcagcacctgatcgccaagaggagatcagcaaactgatgcgaagtgcaagtttcaatacagacccatatgttcgtgaatttggaatcatggtgaaagatgagatgacagatgtgactgggcgggttctgcagccgccctccatcctctacgggggcaggaacaaagcaattgccacccctgtccagggtgtgtgggacatgcgaaacaagcagttccacacgggcatcgagatcaaggtgtgggccatcgcctgcttcgctccccagcgccagtgtacagaagtccatctcaagtccttcacagagcaactgaggaagatctcgagagatgctgggatgccgatccagggtcagccctgcttctgtaaatacgcacagggtgcagacagtgtggagcccatgttccgacacctgaagaacacatacgctggcctccagctggtggtggtcatcctgcctggcaaaactcctgtgtatgcggaagtcaagcgtgtgggagacacagtgctggggatggccacacagtgcgtccagatgaagaacgtgcagaggaccacgccacagaccctatccaatctctgcttaaagatcaatgtcaaactgggaggcgtcaacaacatcctgctgccacagggcaggcctccagtgttccagcaacctgtcatcttcctgggagccgatgtcacccacccaccagctggggatgggaagaaaccttctattgctgccgtcgtgggcagcatggacgcacaccccaaccgctactgtgccaccgtgcgcgtgcagcagcaccgacaggagatcatccaggacctggctgccatggtacgagagttgctcattcagttctacaagtccacccgcttcaagcccacccgcatcatcttctaccgcgatggcgtctccgagggccagttccagcaggttctccaccatgagctcctggccatcagagaggcctgcatcaagctggagaaggactatcagccaggaatcacgttcatcgtggtgcagaagcggcaccacacacgcctcttctgcacagacaaaaatgagcgggttgggaagagtgggaacattcccgcaggcacaaccgtggacacgaagatcacccaccccactgagtttgacttctacctgtgcagtcacgccggcatccaggggacaagccgtccttcccactaccacgtgctttgggatgacaatcgtttttcttctgatgagctgcagattctgacctaccagctgtgtcacacctacgtgcgctgcacacgctctgtgtcaatacccgcgccagcttactatgctcacctggtggccttccgagccaggtaccacctggtggataaagaacatgacagcgctgaaggaagccatacctctgggcagagcaacgggcgagatcaccaagcgctggccaaggcggtccaggtccaccaggacacactgcgcaccatgtactttgcttgacctgttgtattgtttagcgattgtgtaccaagttggattcacacgagaccagctacactcagaccaacagatgcccagcccttctgtgacagccagcatcgaacatgagacgtctttggttttattagatcctccgttttccagaatgccttccgtcccagatgtcagacttggattttgagctgcaggcctgtatgagaccccagtgtaggaaacatggtttgccaaacctataagctgctcactgagagtcccgtttcctaaaaacaaaacaacaacaaaatgtcctaaaaccagtctatgaactctcagggctttaaaacactttaatttatttggtcatccaatttacttgtttttaacacctgattctcactgaaaccgatgggctccatctagctgtgaaggctctgagcatgaaagccacaccatttccattggggttttaaagcctggccctaagaagttgtcactaatgttgagttctaagggatgccatgcgccctgcagccccagggcgtatggctgctaggtctccacagtgtctctcgaggtcactgcctgccctcgaggcctgaacaaaggcacagtggccaaggagatggtcacgtgtgtttacggcagtgacaagtccgagagattggcagacaagtgccattttgataaaaatttatttaaaaagagaaaaaaagacaatatactgacagtctaatcataagatttgtcctgtaggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttaatgtctttaatgtaagagaagaatatatgtatctggtttgcagtattaatgtggtaggtagatgctgtttccctttcgttgacgaggggcgcttcttgtgacctgcttcacatatcaggagctgtgtggagcctggagacagtccacctcttgtggcttttagtgcttaagtagaggaatatgcaactggcttcatgtaccagcgatgccccctcctccctccccacccccagtgtggactgtgtagcctgtacctctggaaggacagtgcgcttgccagtaacctgccgtcctccctgcctcgtccatgtgtgtcgctcagccgatgaagcacaaatggaatttatttattcttccattgctgggaaacaagttcacgtaagagtgcacttctctcagtgtgcagttatggaaggtgggtttcataggatctatgcactgaagtggagagagagctgcccatagcggctctgccagcatgggactggcaggtaggaatggactgtgcccgaggacctgaccgtgggcaaggccagcagggaaggcacagactttctctgggtgttgtttgcttctgggccccagtgtgggttttccagcccagagaccattgaactgagaaggggccactacgagtggctctgcggatggcagcagccacgtcagtgtgtgtgtcctgtggggctttctgtgcttgtcccgaagctgagcaagcatcgggctcgctccgttccacatacgcgtgcgttcccagaaggagacgagccttctcttgtgtgctgctctgtgctctgtgggttttttctacccctgctgatgggcctcatcccccagctctgcgtcatttacctctgaccctgtggaggagggagggtgcccaccctctcccctgccatggcacctcatgctagaggacacagtaccacctttgccccgttccccatctgctctggagctggtgggaagggcagacgcagttacctgggaagtcacaccctcagcaggtgtgtgtatccgtgtatgcatgtgggtgtcttactaatgacaatagtctcttcttgctgtgtctttagaaatcttttaaagtaacaggaccccccctcccccccagtctaagaagcactgggactgcctgctatcccattggcaagtggcaccttctcaaactgtttccaaaacgatagaaaaacactcagttggcctaacatggtcaggctagggaactggttaaactagtgaacttttagaatctgaaattggattgttttcaaccattcttagaaccgcgtgtttctaaggtgtgtcttcagccccttgccatgggatcttagtcatgcaagtgagttttttagaatgcagattctcacctgctgccagcttcttggatctggcactgtgttcgaggccacccctcaacccccaccgtggctctgtaggcgctttctgaggccgtccccccttatgatgccagggggacaggaaggaacccctatcagagctcacacctaggaacacttgtgggctggggcaaaaaatcttgagctgggagttttgttttgatcaccttgaaggataggttttctttctgatgggccaaagtactggaagcaaagtactttctgtagtagcccatgcttacttgtgacacttttaatatgaaatgtatccccagaccaaatgtccctaattgagttagatacacaccatttacatgtctgatggtgcagagctcataaatggctatagttccaatttctcaggtaaataattttccccaattcccgccctccccttattattaagattagtttcgagacagtgtgagacctcagagtgcggtagcagctccggccatcttctgcaggagccagctttttgtgtgtatctgtacccaagactggtgacaggtgccgttttctcctgaggtgatacctggccaagtttgacgactgcccacttgctagctgtgttcccaaccccactgttaagtaaggtgtgccttgctttaagcaaactgaatgtgattgtgttgtgctctgtatccatttggaaggaaaactaggatgtgcctgtctctttaagagaggctacccaattagcctttcatggtgggactctcctagtagtacactgtaagatactcactcttaaaaacccatcatgacatccatccctttaccactgtgtgcaccatgcagcaggtccctccctccccaagctgatgaagcaatgcaaaactctagagagacatcgaggccccattccatagatttagcccttagtgatactagcaaaactcccaccctgtcactgcgtgttttaagcccagattctcctagtccccatcaagtctgaaaccgagcacgcctgtacttctagtcaggggctgttgggttttggcttccttctcccttttggggaaatcctcacatgcacacttgataccactttgggtctgctctgccttctccagatttggcctcttggccactcctcacacccacccgcttgctggcctccaggccacagggcactgccagtgaggagactgctagctccgtgctgtctgcagctggcccaacatctgtatcctaatgtttacctgtcaccgagcggcgcttgatagaaagatggcccctgcagcgggcttgggcaggtttggtttttttggttttggttttgtttttccattgtcttgttcttgtgttattttattggctttaaatgcaaatgttgctatttattttttcctctctctcctgctctggtttgactaagctgatctggctatcccaatgcatgtggtacctgatagatggatatggtagagattatttcccctgccttttataactgtcccagtgtttaccttcaggcttgctaatgctttatttttggaagccacagatgtagtttttctggatgaattgcttttcctatagatgcagcggtatgcttttgcattgatctgcagggtgatttgaattttatttttacaagcagtttttcaatcaaattctatatttgatacaatgtgttaaggttagaccagcccgaagtcatgcagctggggacccctgagtgtccaggaggccttagggctgggtggcctctcttggtagtccctgtggtggtagcactggtcacaggaacctgcagggtccttcagcatggccctgaactcttggattgttacaaggattttttttttttcatgggcattttgctacacagacagtggacaatcccggtggccccagacaagccataagcaacctttctgtgacctccccctgactcatctctcacacccatgagaaaaggaatgtgccctgagtagaagctacacttccttggtgttcatctgcctcacttgtgaatgcagatattttgtttgttttaagcccttccctgcagtaaccatgctggctggctctcacataggcagagcacacgtgactcttgtcacaagcgccccgttgcaggcatgccgactcctgtaagttgcactgatctctcaacagtttcctttattgcgtccaactccccatctgctgtactcatttgaagtgattgtaaacagattcacagtggcaagagtgggacattgcctcacgtctgccatcccaacacacatttcagtattacatgctcgagtgtgcgggctgggctcttactctctcgagcattgtgggctagccttgtctcaacactctgacaagaagttctccctctctatacaggacagcatgctctttgagacctgaaggcttgaatgtaacagattagttaggagtctttgtggcgctttggtctgtttagttttcttgtgatctgcaaggccccccaaaagtatgtccttctagttccgtgtggcctttgtcagcatggacagcatatgaatagcccagtcagtgttaacaggccattgctacattctttggtcagcccctcaacttaaagttgtgaggtcactgctgtgtcagactgtcatttgtggtccatccatgggagacctaaagcctggtgcagccctttatgccatgtgaccttgctgggacctaagtacatggtctgtttagccccacgtggactgtctgtagtcagggtgcccagagtctgaaacaaaaggaattattacactcaaaccgcgggggaggggggtactggggacggacggacagacagacagacagacagacagacagacagacagtgccattgcagacattgcagagccctccctcaccttgtgtctttggatttgttcagccattttatttgtctcaagttgaatgtaccggcttagccaaatcactacagaaggtggtttctttaaaccttttagacagatgcataaaagctacctctgacttctcatagatttgtgtttgctctgaagcatcgctatccacactgaatatagccaaaatatcgcctgaataaaccgagttacgaactcctctgttcagttctggcttgaaaatgtgtgagtgccatactgtgatctggggccgcagctcctctgctgccactgacccagggactcctcagcaccacccagctgcaagatcctagcgtccgagaggctggtagactggcttctctgcatggggaacgtgcaccctccaggctggcgggcgtgactgcgcagggccgcgtgcggctgagcctggagatggtctgttcctgcctggctttgctttcctgttgaatcgtgtaagaaggcatctttacccctgcttctgaatggattgaaagtggctttcctgctctctcctccctttttgtacactataaactcataaaggtgcttcaacaccgactcttgtgcagataatgtagttaagcagttgcatggattcagatagtgcaggcacagctgaccttgggaccctggtgaaagtgaaggactgaaagccctgcgctccatttggaaggagcaatgggctctgcttgactagaaggtccctttagtgttggcagaacagagatttgtcatggggacctgccacctctgaccaagctgtcctgtggctgtctgctttgctgtccaggaggtcatcctcttacatcatggctccacctgcatctccttggcctctccacctaaagtttccttggaaagtcagcataagatcccagatttccctgtttagcttgagggacagatggacagtaccatgaagggacagattgacagtgtcgtgaaggtcggtgcctggggattgggctgggcttaggggagctcttctaaaggttgtctctgcgccctccccaacctcccccacatacacccccattgtattgttttggggggtgtcatcttccattcttttgacttggacagctcagtacccttaagagccctcacatatttctctgtgtagagaacctgaggcgtggagggtggtggggtgtctgcaacacccctgacctgcaccccaggttacttaaatcccctgacttggctggaatttgaaaatccagggaagcacagggtgctagatatgttacacttagggtcacacccaggtgccgtggtgtaagccacagccctcagggcaccagcacagaggcagccagcctccccactcgtgacatttgggaaggatactaaacaagccagagccctggccgctgcagtattcagctaacacttctttttcccggttgaaaggagaacactatttgaaaccttctaatgccctggtggttctagttcctccgttcctgagggctaaaaggttgaatgagctcctgttttgcttagagctgcctttatttgagtccatttaaaggtgaagcacgggactgtctcctctccctgagtcaccagcaagtaggtgcggagacccttctcattcagtcctttctgtatcttcaagcgccccaacatcagtgggatcacgagagcacccacatcagccatcagtggagtcaagtatacatatggggacagaaattggcaaatttacaggttgtaatggccactccagcctgtgacagggcaggccctccatcctgcacagcaggtggcctctgtcctacctccaggcactggctttactatctggacacctagttgagagccttgaaagtctgttcttggtgtccttttagaatcatgctggggctggtcgttagttgaccctgcccagaagctgtcagccctcagctctttcttgcaaactgtgatgccaccttgtagcctacggctgtggagccccgtcctgggttctttgtgccctgaaatgcaggtgcacctctgctgggggttggtggggcactggcaaaggctacttgctggccttgtgttctctgcccctcagcaagactgtctgttgtagtggaagtaggtttagagggatttggaatcatgtctttgtgaatcgagtgtgacgtcatcaggggtacggtgctacttggtcctaatgttttggaatgcttttccgtcgttgttactccattgttactctctgttctatgacactgagggagactgctcacttaggtgtggtgtcacataggactccagctttgatgtgctgtgcgggtggtgtgattatcatctctgaccttctgaagccaggggtggtacccatccctagctcagtctaattaaatctttcctccctgtcaagtgattgctttgggtggttttaacaggagtagtccagtctggatattctattttcttaattacatagaaaaggcccgtgcagcactagctgcagacagataacacatttaacaattttggttcctcttcaaagccaaatagacctatgttgattaaactccaagagggtacaattcagcattaaattaaaatttgagttgtgaatttgagagggaatttcagtatagttgataaagttaagtggcaagtgagtatttataaaagttataagagaataattgtaagtttctgtacaacaatttggctactgcctcataaatacaggaagagaccgtagccctgaatccgactctctcacctcccacataccttggactacctgcctaatatgtatttgagggggtttaacccttggttttatcaaattttctagttttattttatttttataaaataattgaaaaagaaccaaaaaggaatccagaagttccccagtggctcctcccccagtcttaatcccctcccccccacacacacacacacactcaaatgttttagaagacattttgaatcaaaatgtattccacccatttaacgtttgctactttctgagaagtggagtggctacgagggcctgtttcagatggtactctgtatgtcatggacatgtttgtacctgtacagtggatctgtgtgacgacgtcttgtgcttgcggtttagaaaccacgcagtgctgttttgtaaattgacagtttctgtgtaaactattatttatatcccttggcccctctgtataatttttcatttgctacatggattgtataattaattataaaattatagtacctgctaaacccaattctgaggcttcatgtcattgtctttggtttgataccagtctgatcgggaggctgcccaggccttgcgcaataccagtagtgatgttacttaaagttaagccttaatcagacagtgaatttgtgcatttcagagtatgcaaaaaaaaaaaaaaaaaaaaaagcagagtgagtttcaactgcccaggtcaagatgttcaaccctaactaacaggttccttctggagtgaaaaagtctaatgggttccctctggggtgaaaaaagggccgttacccgggttacactcttccctcccacctgcgctctcccatgtggcgtgatgaaactgatcgtgtgcatttctgtggcagtctatctagagacctttgcagggttgtcttcaaatgtctggtttctctcctctggtctgtgacgagcgagcgtctactgccgggagcacagctggggcgtaggtttcaccaacctgctcagcggccaagctctccgctgttactgccacctgctattgcttctgcatagattataacagatttgtgtcgggtaaaagcatcttcaatcttgaggtaaattagaggggacccagctttcttttacaatgtggatctacctcagttaaacagttgggtgctattaactaagtctgtcaaattaaattggaaagtaaccaaacagtgggacataactaactccacgtgaaacttgaagacatcatttccgtttctttaataatactttttatttattttgtgccttttatgttaaccctaatgcgttttttaaaattcagaatagtcatttttctcttgcgtgtggggagcccaactgaccatacaagcagccatctaactgctagagtatactgggatcctaacctaccctcttgggaaacggagggggaaaatgtgtccaagagcaaatttcacacatcacataccccagctcttacatgcttaccttcatagctttcgcttcatttctgtgccatctgaaggggcaacccccaaaactgacactcgagtgctttgtctctgctttttcagctgtccgtgtctctcttctctggcatgttttctataagactttctttcataaacagcaagtggactgttgtcgatcccatctcctggcttgcacagtgaaggtgctaaacgccaggagcagaggcgggggcaagctcacggttgtctggaggccaggccggaggcggggaggatgtgcacgatgcggcagcccgcggtttatgaagtcaggaacactctggtaagaaaataagatcggagatcgataactttccatgcctttatatttggcagtttacaacttttcctactacggcaacctttttgccataattctttggaggtaacacaatattttgaagtcttatgaatttgattttataccagtgagaagtcaaagttttagcggtctttcctgtagtgtatggttttactcttttaaagtcatctctggattttagaagagaacctattgtacttggtggctccaaaaggtgatttggggagccctgtcccttcccttcttgctctgctcccccccccccctttccctttgcagggtctcaaaaaaggaaaacaagaaaaaaaaatgatggttctagttagatttgtgggggttttttattgttggtttttttttttaagcttccatcaggttgatacttaagctatattttatagaataaatccccctttagtatgctgcatatggatatgaagctcagagctgttgcactttctctgtaatcaatgccctccaactggctcgctggaagcattttcttttaacctaatgtgtactttgggcaggtgatgaaatttacacaggtacctcaagtcaagacctgcgcgtgctgcatttggatttttggttttgttttgttttgcttttctatgtatcattatgttttacttaattttgttctggtgttatgctttttggaccccaatagtctgttgaaagaaaaacctaaaaagttagtatccttgttttctcccccctgcagtatgtggttctaaaggtcaccccccccccccattaggaatctcccccaagcacacccgaggaaaagggtacgacgggcgcttctcagcgggccgtgccattgagatcttttatattcatgctgcttctagtcccttctccacatcacctaagggtgggtacctccattgcgatgttgtggcatcttaacttttacacacagacctcatgggtgtccactgaggaagtagtatgagcctaaagacactggcagcgtgcagcctggcctgggagtggcggccttcgcatctctctctctctcagcactcagccacgctgacctggccgggtggtccgcgtggacaggacagctggtgaagcaagccggatgctcagaacactgcgcgtctcctgtcctgttttaagcttagctgggtcctttgttttcacagcttcctaggttaaatagtttgcactatttttgcaataaattcatgggaaacctaatggctacttatgttgttgttcttactgtgtgtataaactaacactaaaggtttgctatagtgttttcttttcacctccttatgtagccccataacatgcacagaatgctgtaaacctgattaagatatgatgtggatattttataaagttattttgtatggtgtcgattttgttttgccgcatagtgtgtcagcaaaaaataaaataaaataaaattcctcgtatttacagctgccta
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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