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2024-05-04 06:53:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_153109               1036 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus TGFB-induced factor homeobox 2-like, X-linked 1
            (Tgif2lx1), mRNA.
ACCESSION   NM_153109
VERSION     NM_153109.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Lu Y, Oura S, Matsumura T, Oji A, Sakurai N, Fujihara Y, Shimada K,
            Miyata H, Tobita T, Noda T, Castaneda JM, Kiyozumi D, Zhang Q,
            Larasati T, Young SAM, Kodani M, Huddleston CA, Robertson MJ,
            Coarfa C, Isotani A, Aitken RJ, Okabe M, Matzuk MM, Garcia TX and
            Ikawa M.
  TITLE     CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched
            genes dispensable for male fertility in micedagger
  JOURNAL   Biol Reprod 101 (2), 501-511 (2019)
   PUBMED   31201419
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K,
            Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre
            A, Pombero A, Rubenstein JLR, Wakeman WB, Hohmann J, Dee N, Sodt
            AJ, Young R, Smith K, Nguyen TN, Kidney J, Kuan L, Jeromin A,
            Kaykas A, Miller J, Page D, Orta G, Bernard A, Riley Z, Smith S,
            Wohnoutka P, Hawrylycz MJ, Puelles L and Jones AR.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   3  (bases 1 to 1036)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 1036)
  AUTHORS   Jin L, Zhou Y, Kuang C, Lin L and Chen Y.
  TITLE     Expression pattern of TG-interacting factor 2 during mouse
            development
  JOURNAL   Gene Expr Patterns 5 (4), 457-462 (2005)
   PUBMED   15749073
REFERENCE   5  (bases 1 to 1036)
  AUTHORS   Lai YL, Li H, Chiang HS and Hsieh-Li HM.
  TITLE     Expression of a novel TGIF subclass homeobox gene, Tex1, in the
            spermatids of mouse testis during spermatogenesis
  JOURNAL   Mech Dev 113 (2), 185-187 (2002)
   PUBMED   11960710
  REMARK    GeneRIF: Tex1 may play a crucial role during mouse spermatogenesis
REFERENCE   6  (bases 1 to 1036)
  AUTHORS   Nakamura K, Funakoshi H, Tokunaga F and Nakamura T.
  TITLE     Molecular cloning of a mouse scavenger receptor with C-type lectin
            (SRCL)(1), a novel member of the scavenger receptor family
  JOURNAL   Biochim Biophys Acta 1522 (1), 53-58 (2001)
   PUBMED   11718900
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF434662.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AF434662.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 49.58 cM"
     gene            1..1036
                     /gene="Tgif2lx1"
                     /gene_synonym="Tex1; Tgif2lx; Tgifx1"
                     /note="TGFB-induced factor homeobox 2-like, X-linked 1"
                     /db_xref="GeneID:245583"
                     /db_xref="MGI:MGI:2387796"
     exon            1..1022
                     /gene="Tgif2lx1"
                     /gene_synonym="Tex1; Tgif2lx; Tgifx1"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..803
                     /gene="Tgif2lx1"
                     /gene_synonym="Tex1; Tgif2lx; Tgifx1"
                     /note="TGIF homeobox 1; TGF beta-induced transcription
                     factor 2-like protein; testis expressed homeobox Tex1"
                     /codon_start=1
                     /product="TGFB-induced factor homeobox 2-like, X-linked 1"
                     /protein_id="NP_694749.1"
                     /db_xref="CCDS:CCDS30368.1"
                     /db_xref="GeneID:245583"
                     /db_xref="MGI:MGI:2387796"
                     /translation="
MEEAEGSPEETQDFMKYYSSFGIRLERTCKMKFHDSRELPRGNMLPLKSVKILRDWLCEHQFNAYPTVADKRMLSKNTDLSYLQVSNWFVNIRKHLRWEIRYKPYSLSHEGQAANAAQKQHSNPSEEVKTQFNENADMQDLPLPIRQDSEEKVPYLESSPNQKVIAEDNIEKEEKISITEPWSSPEVAWPEEKPDFSSFYMLVDVAVQKAKEMEEQKKQNPNPQGPQQQFM"
     misc_feature    282..389
                     /gene="Tgif2lx1"
                     /gene_synonym="Tex1; Tgif2lx; Tgifx1"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      
atccaattcagacagcagtgaaagtcttccctgactctctctgggcagctttagtcctacttcgttcatccctggtttctaagccactgaaagcagtcttccagaacatggaggaggctgaaggtagtccggaagaaacccaggactttatgaaatactacagctctttcgggataagacttgagagaacctgtaagatgaagtttcatgacagtcgggagcttccgagaggaaacatgttgccattgaagtctgtgaagatcctccgtgactggctctgtgagcaccagtttaacgcctaccctactgtagcagacaaacgaatgctgtccaagaataccgatttatcttacctgcaggtatccaactggtttgtaaatatccgcaaacaccttcgctgggaaattcgttacaaaccatacagcttgagtcacgaaggccaggctgccaatgcagcccagaagcagcactccaatccatccgaggaggtcaagacacagtttaacgaaaacgccgatatgcaggatctgcccctgccaatacgtcaagattccgaagagaaagtgccatatctggagtcttctccaaaccagaaggttatcgctgaagacaacatagagaaagaagagaagatttcaatcactgagccttggtcttctcctgaagttgcatggccagaggaaaagcctgattttagcagcttctacatgttggttgatgttgctgtacagaaggcaaaagaaatggaggagcagaagaagcaaaaccccaacccacagggtccccaacaacagttcatgtagccagttctttgaactctgggaggttcatttatacttaacctgattagcttgtaatgccgtcttctgctccatattattctcctttagaagtcttttccatcaatgttttctgaagaaagttactatccatgatattcaactttaacaaattgctaactttattctcctcccctggactttagccctatatatttattattaaacatcatgcaagctacaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]