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Previous release (v1)
2024-11-01 09:11:37, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_144887 4740 bp mRNA linear ROD 20-JUN-2024
DEFINITION Mus musculus zinc finger, DHHC domain containing 5 (Zdhhc5), mRNA.
ACCESSION NM_144887
VERSION NM_144887.4
KEYWORDS RefSeq; RefSeq Select.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 4740)
AUTHORS Balasubramanian,A., Hsu,A.Y., Ghimire,L., Tahir,M., Devant,P.,
Fontana,P., Du,G., Liu,X., Fabin,D., Kambara,H., Xie,X., Liu,F.,
Hasegawa,T., Xu,R., Yu,H., Chen,M., Kolakowski,S., Trauger,S.,
Larsen,M.R., Wei,W., Wu,H., Kagan,J.C., Lieberman,J. and Luo,H.R.
TITLE The palmitoylation of gasdermin D directs its membrane
translocation and pore formation during pyroptosis
JOURNAL Sci Immunol 9 (94), eadn1452 (2024)
PUBMED 38530158
REFERENCE 2 (bases 1 to 4740)
AUTHORS Zhou,Y., Yue,S., Li,L., Zhang,J., Chen,L. and Chen,J.
TITLE SMPDL3B is palmitoylated and stabilized by ZDHHC5, and its
silencing aggravates diabetic retinopathy of db/db mice: Activation
of NLRP3/NF-kappaB pathway
JOURNAL Cell Signal 116, 111064 (2024)
PUBMED 38266744
REMARK GeneRIF: SMPDL3B is palmitoylated and stabilized by ZDHHC5, and its
silencing aggravates diabetic retinopathy of db/db mice: Activation
of NLRP3/NF-kappaB pathway.
REFERENCE 3 (bases 1 to 4740)
AUTHORS Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
Jackson,S.P. and Balmus,G.
CONSRTM Sanger Mouse Genetics Project
TITLE Genetic determinants of micronucleus formation in vivo
JOURNAL Nature 627 (8002), 130-136 (2024)
PUBMED 38355793
REFERENCE 4 (bases 1 to 4740)
AUTHORS Zheng,S., Que,X., Wang,S., Zhou,Q., Xing,X., Chen,L., Hou,C.,
Ma,J., An,P., Peng,Y., Yao,Y., Song,Q., Li,J., Zhang,P. and Pei,H.
TITLE ZDHHC5-mediated NLRP3 palmitoylation promotes NLRP3-NEK7
interaction and inflammasome activation
JOURNAL Mol Cell 83 (24), 4570-4585 (2023)
PUBMED 38092000
REMARK GeneRIF: ZDHHC5-mediated NLRP3 palmitoylation promotes NLRP3-NEK7
interaction and inflammasome activation.
REFERENCE 5 (bases 1 to 4740)
AUTHORS Yan,P., Liu,H., Zhou,T., Sun,P., Wang,Y., Wang,X., Zhang,L.,
Wang,T., Dong,J., Zhu,J., Lv,L., Li,W., Qi,S., Liang,Y. and Kong,E.
TITLE Crosstalk of Synapsin1 palmitoylation and phosphorylation controls
the dynamicity of synaptic vesicles in neurons
JOURNAL Cell Death Dis 13 (9), 786 (2022)
PUBMED 36097267
REMARK Publication Status: Online-Only
REFERENCE 6 (bases 1 to 4740)
AUTHORS Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
TITLE A systems approach reveals that the myogenesis genome network is
regulated by the transcriptional repressor RP58
JOURNAL Dev Cell 17 (6), 836-848 (2009)
PUBMED 20059953
REFERENCE 7 (bases 1 to 4740)
AUTHORS Munton,R.P., Tweedie-Cullen,R., Livingstone-Zatchej,M.,
Weinandy,F., Waidelich,M., Longo,D., Gehrig,P., Potthast,F.,
Rutishauser,D., Gerrits,B., Panse,C., Schlapbach,R. and Mansuy,I.M.
TITLE Qualitative and quantitative analyses of protein phosphorylation in
naive and stimulated mouse synaptosomal preparations
JOURNAL Mol Cell Proteomics 6 (2), 283-293 (2007)
PUBMED 17114649
REFERENCE 8 (bases 1 to 4740)
AUTHORS Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
TITLE Prediction of the coding sequences of mouse homologues of KIAA
gene: IV. The complete nucleotide sequences of 500 mouse
KIAA-homologous cDNAs identified by screening of terminal sequences
of cDNA clones randomly sampled from size-fractionated libraries
JOURNAL DNA Res 11 (3), 205-218 (2004)
PUBMED 15368895
REFERENCE 9 (bases 1 to 4740)
AUTHORS Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
TITLE BayGenomics: a resource of insertional mutations in mouse embryonic
stem cells
JOURNAL Nucleic Acids Res 31 (1), 278-281 (2003)
PUBMED 12520002
REFERENCE 10 (bases 1 to 4740)
AUTHORS Nagaya,M., Inohaya,K., Imai,Y. and Kudo,A.
TITLE Expression of zisp, a DHHC zinc finger gene, in somites and lens
during zebrafish embryogenesis
JOURNAL Mech Dev 119 Suppl 1, S311-S314 (2002)
PUBMED 14516702
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AW491606.1, AY894891.1, BC065155.1 and AK173251.1.
On Nov 22, 2008 this sequence version replaced NM_144887.3.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AK173251.1, AK145086.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN00849384, SAMN01164139
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on single protein-coding transcript
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-8 AW491606.1 1-8
9-1949 AY894891.1 1-1941
1950-4690 BC065155.1 1820-4560
4691-4740 AK173251.1 4648-4697
FEATURES Location/Qualifiers
source 1..4740
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="2"
/map="2 49.45 cM"
gene 1..4740
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="zinc finger, DHHC domain containing 5"
/db_xref="GeneID:228136"
/db_xref="MGI:MGI:1923573"
exon 1..182
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 183..1337
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
misc_feature 976..978
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="upstream in-frame stop codon"
CDS 1234..3381
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/EC_number="2.3.1.225"
/note="probable palmitoyltransferase ZDHHC5; DHHC-5; zinc
finger DHHC domain-containing protein 5"
/codon_start=1
/product="palmitoyltransferase ZDHHC5"
/protein_id="NP_659136.1"
/db_xref="CCDS:CCDS16190.1"
/db_xref="GeneID:228136"
/db_xref="MGI:MGI:1923573"
/translation="
MPAESGKRFKPSKYVPVSAAAIFLVGATTLFFAFTCPGLSLNVSPAVPIYNAIMFLFVLANFSMATFMDPGIFPRAEEDEDKEDDFRAPLYKTVEIKGIQVRMKWCATCRFYRPPRCSHCSVCDNCVEEFDHHCPWVNNCIGRRNYRYFFLFLLSLTAHIMGVFGFGLLYVLYHIEELSGVRTAVTMAVMCVAGLFFIPVAGLTGFHVVLVARGRTTNEQVTGKFRGGVNPFTNGCCNNVSRVLCSSPAPRYLGRPKKEKTIVIRPPFLRPEVSDGQITVKIMDNGIQGELRRTKSKGSLEITESQSADAEPPPPPKPDLSRYTGLRTHLSLATNEDSSLLGKDSPPTPTMYKYRPGYSSSSTSAAMPHSSSAKLSRGDSLKEPTSIADSSRHPSYRSEPSLEPESFRSPTFGKSFHFDPLSSGSRSSSLKSAQGTGFELGQLQSIRSEGTTSTSYKSLANQTRNGSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSARLAQQREAERHPRLLPTGPPHREPSPVRYDNLSRHIVASLQEREKLLRQSPPLAGREEEPGLGDSGIQSTPGSGHAPRTSSSSDDSKRSPLSKTPLGRPAVPRFGKPDGLRSRGLGSPEPGTTAPYLGRSISYSSQKAPSGVSETEEVALQPLLTPKDEVQLKTTYSKSNGQPKSIGSASPGPGQPPLSSPTRGGVKKVSGVGGTTYEISV"
misc_feature 1273..1335
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="propagated from UniProtKB/Swiss-Prot (Q8VDZ4.1);
transmembrane region"
misc_feature 1390..1452
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="propagated from UniProtKB/Swiss-Prot (Q8VDZ4.1);
transmembrane region"
misc_feature 1504..1506
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphotyrosine.
/evidence=ECO:0007744|PubMed:18034455; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 1528..1905
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="DHHC palmitoyltransferase; Region: DHHC; pfam01529"
/db_xref="CDD:396215"
misc_feature 1678..1740
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="propagated from UniProtKB/Swiss-Prot (Q8VDZ4.1);
transmembrane region"
misc_feature 1807..1869
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="propagated from UniProtKB/Swiss-Prot (Q8VDZ4.1);
transmembrane region"
misc_feature 1972..1974
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2098..3378
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="propagated from UniProtKB/Swiss-Prot (Q8VDZ4.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2113..2115
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2119..2121
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:17242355,
ECO:0007744|PubMed:19144319, ECO:0007744|PubMed:21183079;
propagated from UniProtKB/Swiss-Prot (Q8VDZ4.1);
phosphorylation site"
misc_feature 2128..2130
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:17242355,
ECO:0007744|PubMed:19144319, ECO:0007744|PubMed:21183079;
propagated from UniProtKB/Swiss-Prot (Q8VDZ4.1);
phosphorylation site"
misc_feature 2140..2142
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2266..2268
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:17242355,
ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2275..2277
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2281..2283
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2371..2373
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:19144319,
ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2425..2427
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2449..2451
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2458..2460
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2464..2466
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphothreonine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2476..2478
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2506..2508
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2518..2520
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2527..2529
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2539..2541
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2818..2820
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 2893..2895
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 3082..3084
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Omega-N-methylarginine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); methylation site"
misc_feature 3094..3096
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:19144319,
ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 3208..3210
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphothreonine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 3283..3285
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 3313..3315
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9C0B5; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); phosphorylation site"
misc_feature 3322..3324
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="Omega-N-methylarginine.
/evidence=ECO:0007744|PubMed:24129315; propagated from
UniProtKB/Swiss-Prot (Q8VDZ4.1); methylation site"
exon 1338..1459
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 1460..1617
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 1618..1790
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 1791..1893
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 1894..1985
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 1986..2118
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 2119..2242
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 2243..2355
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 2356..3215
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
exon 3216..4740
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/inference="alignment:Splign:2.1.0"
regulatory 4503..4508
/regulatory_class="polyA_signal_sequence"
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="hexamer: AATAAA"
polyA_site 4519
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="major polyA site"
regulatory 4627..4632
/regulatory_class="polyA_signal_sequence"
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="hexamer: ATTAAA"
regulatory 4671..4676
/regulatory_class="polyA_signal_sequence"
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="hexamer: AATACA"
polyA_site 4672
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
polyA_site 4690
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
regulatory 4721..4726
/regulatory_class="polyA_signal_sequence"
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
/note="hexamer: AGTAAA"
polyA_site 4740
/gene="Zdhhc5"
/gene_synonym="1110032A17Rik; Zisp"
ORIGIN
cggccgcgcgccggccgcacagaggcgagcgtcggccgtcgggagcgcgcggcggcggggcgggcgtggagcgtgcgggggccgcgcgctgcctctcagaggccagacggcactgctgggaggcggcggcgacaacgacggcggtgacaacgacggcggcggtgacgggcgccgcgccgggggtaaagcaccatatcccatctgcatccaggaagcccaagattgaagacaaaagatcagagacattgactaacctggaaacagggacatctttggaactttatctacagtaatcttttaaactgtcatcaggtgaaatcaacttcatcttattctgcttattgaaaaggacatggcttcttcaaggattttaaatttccttttagttttttgtgaactttatgggaaacagagcccttaaaaggcttgggaataacaagaagagattgaaaacaggcaatactgctgtctgtttttttctccccattcaaagaaaaggatttacaactcaaccctgtaacagctgttatccaactttgtccatcaagagagacataaataaaattaaatcaccattgccagccagccagccctggtgaagttaaggtgtgagagtggtggcattgagaagacggccggaaagagacgaggactgcagttaaaataaatcagcttctctttaagctggaagagaccccaagttccttctcggattaaactagaaacccagggcacaccttttaggtgctgctcctagtgtggtgttgtggaggggctcttgtatctcctcagaagagttaaagcttcctgccctccccaccccctgatacttctgtcctcccttttgaagacctgccttcatccatgagctataccttgatctgcctgactctgcatggtttccacctgcaactgtttgcatgcatacagcctactgtttgtcttcacgttttaaactgtacaagttgtgtttcttaatctccttttctgctctattctggggaggtggtttttaatcagttgaaatcacctttccccctcccatgtgctttccttcatttgagatcttttgaccttcatttttatttgggagggggaagggtgataattatacattttctgttttccccagtttctttcctctctgtttccctcatcccattttcttgtctgttctgccgctgtgtgggcctgggctatgcggcagggcacatctttcatcagagctccaacatgcccgcagagtctggaaagaggttcaaacccagcaagtatgtaccggtctcagcagccgccatatttctagtgggagctacaacactcttctttgcctttacgtgtccaggactaagcctgaatgtgtcacctgcagtgcccatttacaatgcaattatgtttctctttgtgctggccaactttagcatggccacctttatggacccaggaatttttccccgagccgaggaagatgaagacaaagaagatgacttccgagctcccctttacaaaacagtggagatcaagggtatccaggtgcgaatgaaatggtgtgccacctgccgcttttaccgccctcctagatgctcccactgcagtgtctgtgacaactgtgtggaggaatttgaccatcactgcccttgggtaaacaactgtattggtcgcaggaactacagatacttcttccttttcctcctttccctgacagctcacatcatgggtgtgtttggctttggcctcctttatgtcctctatcacatagaggaactctcaggggtccgcactgctgtcaccatggcagtgatgtgtgtggctggcttatttttcatccctgtagctggcctcacaggatttcatgtggtgctggtggctaggggacgcacaaccaatgaacaggttacaggtaaattccggggaggtgtgaatcccttcaccaatggctgctgtaacaacgttagccgtgtcctctgcagttctccagcacccaggtatttggggagaccaaagaaagagaagacaattgtaatcagacctcctttccttcgaccagaagtgtcagatgggcagataactgtgaagatcatggataatggcatccagggagaattgaggaggactaagtctaaaggaagcctagagataacagagagccagtctgcagatgcagaacctccacctcctcctaagccggacctcagccgatacacggggcttcgaacacacctcagcctggctactaatgaggatagcagtctcttgggcaaggacagtccccctacacctaccatgtacaagtatcgaccaggttacagcagcagtagcacatcagccgccatgcctcattcctccagcgccaagttgagtcgtggagacagcttaaaggagccaacttcaattgcagatagcagccgccatcccagctaccgctcagaacccagcttggagccagagagcttccggtctcctacttttggcaaaagctttcattttgatccattgtccagtggctcacgatcctccagcctcaagtcagctcagggcacgggctttgagctgggccagttgcagtccattcgttcagagggcaccacctccacctcctataagagcctggccaatcagacacgcaatggaagtctatcttatgacagcctactcactccttcagacagccctgattttgagtcagtacaggcagggcctgagccagacccacctttaggctacacctctcccttcctgtcagcccggctggcccagcaacgggaagccgagaggcatccacgtttgctgccaactggcccaccacaccgagaaccctcaccagtccgttatgacaatctgtctcgccacattgtggcctccctccaggaacgagagaagctgctacgacagtcacctccacttgcaggccgtgaggaagaaccaggcttgggagactcaggcattcagtcaacaccaggctcaggccatgccccccgtactagttcctcctcagatgattccaagagatcacccttgagtaagactccactgggacgcccagctgttccccgttttggcaaaccagatgggctaagaagccggggactagggtcccctgaaccaggcacaactgccccctacctgggccgatcaatatcctatagcagccaaaaagccccatctggtgtctcagagacagaggaagtagcattgcagccattactgacacccaaagatgaagtacagctcaagaccacctacagcaaatccaatgggcagcccaagagtataggctcagcttcccctggcccaggccagccacctctcagtagccccacaaggggaggagtcaagaaggtgtcaggggtgggtggcaccacttatgagatttctgtgtgaatcttggcgcctcccttcccccacacctctgcacctacaccaaagggcctcaggtggccaccttccttccttcaaggggctccccttctttgcatggacatttttaaaatcaccgactccatgaggatgaggtttgttttacaaaatgccatgaggttaaggagagttgggaccctgagactggagtggcacctccccctcctttgatcttttaagaccttcccttccttgatccctggaccagactcagtggacatttgtgcaattgctcgccctggagggaaccagatcatttttaaaccagaaataattttttttattattgttacggattctatttttttcctcttctccgttaccaggtgtgtgtgtacatatatatatatatatatattataaatatcaaagaaattatatatctatcctgggatgggaaaacaagggagggatatatagatatatatatatatatatacataaggagggggattttattcttccctttccttagaccagcaggaaaagagagacattaaagtcttccttttctcaatggttccctctcttttgtcccagttaccaactaaggaagtagcactctctgctggtgctaagagattaggaaagaaacctgggtacatctggggttctcagataaaagaacttgggagagttttttaggctccttcacatctagtttccccaggaaaggggtcagttacatgacggtggtgggagatcaggaagagagcttggcctaatttaagaaacaccaggcaaccctgccctccattcttgggagacagggactgtgttgggcttcagtgagccccttcaatgcttccctataatcagaaaaatcttaaaatccaaggccaggagagaagaatccaaaaagcaatatttttcatcacatgccaaaaatgggatagagagaaggagtggcaggcctaggcccctccgagtgtcccttggggtttaccccttagcccatctcaatatggtgctgggtagagggggtagctgggttctaacctttaaacagggaagactccagcctctatacagagaccctttaatttttttattctgattagccattttaaaccaacaaggaataaaataaatcctgatctaaccagtcccccctgacttgtgttttgtctggttaaggcagggtgaatggtcttagggagtcaaaagagaaacctcattctctggttctgtttttattctggctatccaattaaatgccctgctgggtgagaaaaacctagcttttcataacaaatacatcctctctgttgaatctcttgctattcctttgtttccttttgaaagtaaaaacagctaagcatg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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