2024-04-29 05:55:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_029636 1330 bp mRNA linear ROD 26-MAY-2023 DEFINITION Mus musculus cathepsin Q (Ctsq), mRNA. ACCESSION NM_029636 VERSION NM_029636.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1330) AUTHORS Astrof S, Arriagada C, Saijoh Y, Francou A, Kelly RG and Moon A. TITLE Aberrant differentiation of second heart field mesoderm prefigures cellular defects in the outflow tract in response to loss of FGF8 JOURNAL Dev Biol 499, 10-21 (2023) PUBMED 37060937 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 1330) AUTHORS Lee JG, Kim G, Park SG, Yon JM, Yeom J, Song HE, Cheong SA, Lim JS, Sung YH, Kim K, Yoo HJ, Hong EJ, Nam KH, Seong JK, Kim CJ, Nam SY and Baek IJ. TITLE Lipid signatures reflect the function of the murine primary placentationdagger JOURNAL Biol Reprod 106 (3), 583-596 (2022) PUBMED 34850819 REFERENCE 3 (bases 1 to 1330) AUTHORS Torregrosa-Carrion R, Pineiro-Sabaris R, Siguero-Alvarez M, Grego-Bessa J, Luna-Zurita L, Fernandes VS, MacGrogan D, Stainier DYR and de la Pompa JL. TITLE Adhesion G protein-coupled receptor Gpr126/Adgrg6 is essential for placental development JOURNAL Sci Adv 7 (46), eabj5445 (2021) PUBMED 34767447 REFERENCE 4 (bases 1 to 1330) AUTHORS Li F, Xu R, Lin CL, Low BE, Cai L, Li S, Ji P, Huang L, Wiles MV, Hannun YA, Obeid LM, Chen Y and Mao C. TITLE Maternal and fetal alkaline ceramidase 2 is required for placental vascular integrity in mice JOURNAL FASEB J 34 (11), 15252-15268 (2020) PUBMED 32959379 REFERENCE 5 (bases 1 to 1330) AUTHORS Vrooman LA, Rhon-Calderon EA, Chao OY, Nguyen DK, Narapareddy L, Dahiya AK, Putt ME, Schultz RM and Bartolomei MS. TITLE Assisted reproductive technologies induce temporally specific placental defects and the preeclampsia risk marker sFLT1 in mouse JOURNAL Development 147 (11) (2020) PUBMED 32471820 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1330) AUTHORS Simmons DG, Fortier AL and Cross JC. TITLE Diverse subtypes and developmental origins of trophoblast giant cells in the mouse placenta JOURNAL Dev Biol 304 (2), 567-578 (2007) PUBMED 17289015 REFERENCE 7 (bases 1 to 1330) AUTHORS Liu P, Wang Y, Vikis H, Maciag A, Wang D, Lu Y, Liu Y and You M. TITLE Candidate lung tumor susceptibility genes identified through whole-genome association analyses in inbred mice JOURNAL Nat Genet 38 (8), 888-895 (2006) PUBMED 16862160 REFERENCE 8 (bases 1 to 1330) AUTHORS Ishida M, Ono K, Taguchi S, Ohashi S, Naito J, Horiguchi K and Harigaya T. TITLE Cathepsin gene expression in mouse placenta during the latter half of pregnancy JOURNAL J Reprod Dev 50 (5), 515-523 (2004) PUBMED 15514457 REMARK GeneRIF: Possible association of cathepsins with placental lactogen-II may play important roles in placental functions during the latter half of pregnancy in mice. REFERENCE 9 (bases 1 to 1330) AUTHORS Deussing J, Kouadio M, Rehman S, Werber I, Schwinde A and Peters C. TITLE Identification and characterization of a dense cluster of placenta-specific cysteine peptidase genes and related genes on mouse chromosome 13 JOURNAL Genomics 79 (2), 225-240 (2002) PUBMED 11829493 REFERENCE 10 (bases 1 to 1330) AUTHORS Sol-Church K, Frenck J and Mason RW. TITLE Cathepsin Q, a novel lysosomal cysteine protease highly expressed in placenta JOURNAL Biochem Biophys Res Commun 267 (3), 791-795 (2000) PUBMED 10673370 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AC160115.2. On Mar 21, 2007 this sequence version replaced NM_029636.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AY014776.1, BC099415.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164134 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-33 AC160115.2 36727-36759 c 34-167 AC160115.2 35589-35722 c 168-290 AC160115.2 35191-35313 c 291-470 AC160115.2 34922-35101 c 471-695 AC160115.2 33834-34058 c 696-858 AC160115.2 33216-33378 c 859-973 AC160115.2 32337-32451 c 974-1330 AC160115.2 31200-31556 c FEATURES Location/Qualifiers source 1..1330 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="13" /map="13 32.65 cM" gene 1..1330 /gene="Ctsq" /gene_synonym="1600010J02Rik" /note="cathepsin Q" /db_xref="GeneID:104002" /db_xref="MGI:MGI:2137385" exon 1..33 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="alignment:Splign:2.1.0" exon 34..167 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="alignment:Splign:2.1.0" misc_feature 36..38 /gene="Ctsq" /gene_synonym="1600010J02Rik" /note="upstream in-frame stop codon" CDS 42..1073 /gene="Ctsq" /gene_synonym="1600010J02Rik" /codon_start=1 /product="cathepsin Q precursor" /protein_id="NP_083912.2" /db_xref="CCDS:CCDS26584.1" /db_xref="GeneID:104002" /db_xref="MGI:MGI:2137385" /translation="
MTPAFFLVILCLGILSGVSAFDPSLDVEWKEWMGSFEKLYSPEEEVLRRAIWEENVKRIKLHNRENSLGKNTYTMGLNGFADMTDEEFMNIVIGATLPVDNTRKSLWKRALGSPFPKSWYWKDALPKFVDWRNEGYVTRVRNQRNCNSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLVDCSRPQGNRGCRWGNTYNGFQYVLHNGGLEAQATYPYEGKEGLCRYNPKNSAAKITGFVVLPESEDVLMDAVATKGPIATGIHVVSSSFRFYDGGVYYEPNCTSSVNHAVLIIGYGYVGNETDGNNYWLIKNSWGRRWGLSGYMMIAKDRNNHCAIASLAQYPTV"
sig_peptide 42..101 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 126..302 /gene="Ctsq" /gene_synonym="1600010J02Rik" /note="Cathepsin propeptide inhibitor domain (I29); Region: Inhibitor_I29; smart00848" /db_xref="CDD:214853" misc_feature 414..1067 /gene="Ctsq" /gene_synonym="1600010J02Rik" /note="Papain family cysteine protease; Region: Peptidase_C1; pfam00112" /db_xref="CDD:425470" misc_feature order(468..470,486..488,897..899,969..971) /gene="Ctsq" /gene_synonym="1600010J02Rik" /note="active site" /db_xref="CDD:239068" misc_feature order(618..623,816..818,891..893,900..902,1050..1052) /gene="Ctsq" /gene_synonym="1600010J02Rik" /note="S2 subsite [active]" /db_xref="CDD:239068" exon 168..290 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="alignment:Splign:2.1.0" exon 291..470 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="alignment:Splign:2.1.0" exon 471..695 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="alignment:Splign:2.1.0" exon 696..858 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="alignment:Splign:2.1.0" exon 859..973 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="alignment:Splign:2.1.0" exon 974..1330 /gene="Ctsq" /gene_synonym="1600010J02Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gtgatctgaggcagtagtggtcatcccagaaaggttgagacatgactcctgctttcttcctggtcatcctgtgcttgggaatcctgtcaggtgtttcagcatttgatcccagtttggatgtcgaatggaaagagtggatgggaagctttgaaaaattatacagtccggaggaagaagtactgagaagagcaatatgggaagaaaatgtaaaaaggattaaactgcataacagggagaattccctagggaagaatacctacaccatgggattaaatgggtttgctgacatgactgatgaagaattcatgaacattgtaattggtgctacattgccagttgacaacacaagaaaaagtctctggaaacgtgcacttggtagtccttttcctaaatcttggtattggaaagatgctttgcccaaatttgttgattggcgaaatgaaggctatgtgactcgtgtgaggaatcagagaaattgtaattcttgttgggcttttcctgtgactggtgccatagaaggacaaatgttcaagaaaacaggcaaactgatcccactgagtgtacagaacctagtggactgttctaggcctcaaggcaatagaggctgtcgttggggtaatacatacaatggattccagtacgttttgcacaatggaggtctggaggctcaggcaacctatccttatgaaggaaaagaaggactatgcaggtacaatcctaaaaattctgctgctaaaatcacaggatttgtggtcctcccagaaagtgaagatgtcctcatggatgctgtagcaactaaaggccccattgctactggaattcatgttgtctccagtagttttaggttctatgatggaggtgtttattatgaaccaaattgcacaagttctgtgaatcatgcagttttgataattggctatggttatgtgggaaatgaaacggatggcaataattactggctgatcaagaacagctggggtagacgatggggattgagtggatatatgatgattgccaaagacaggaacaaccactgtgcaattgcttcattggcccaataccctactgtgtgagcaccctgatgttcacaagaaagcatgtggcatgagactctatttccagaggagtgccatccactccaatgaacagactttattgactatgttaaactcttgagtcccacaaaatccacattgtaatgtgaattctgggagctttcaaatatttcacatgagtactgtaacttttgctttcactactgaatgctcatgttttctaaagtaactttattttcacttttaatgtttgtgcaaataaaatccttaaaaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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