2024-05-08 13:15:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_027287 4861 bp mRNA linear ROD 05-AUG-2023 DEFINITION Mus musculus DnaJ heat shock protein family (Hsp40) member B4 (Dnajb4), transcript variant 1, mRNA. ACCESSION NM_027287 VERSION NM_027287.5 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4861) AUTHORS Inoue M, Noguchi S, Inoue YU, Iida A, Ogawa M, Bengoechea R, Pittman SK, Hayashi S, Watanabe K, Hosoi Y, Sano T, Takao M, Oya Y, Takahashi Y, Miyajima H, Weihl CC, Inoue T and Nishino I. TITLE Distinctive chaperonopathy in skeletal muscle associated with the dominant variant in DNAJB4 JOURNAL Acta Neuropathol 145 (2), 235-255 (2023) PUBMED 36512060 REMARK GeneRIF: Distinctive chaperonopathy in skeletal muscle associated with the dominant variant in DNAJB4. REFERENCE 2 (bases 1 to 4861) AUTHORS Weihl CC, Topf A, Bengoechea R, Duff J, Charlton R, Garcia SK, Dominguez-Gonzalez C, Alsaman A, Hernandez-Lain A, Franco LV, Sanchez MEP, Beecroft SJ, Goullee H, Daw J, Bhadra A, True H, Inoue M, Findlay AR, Laing N, Olive M, Ravenscroft G and Straub V. TITLE Loss of function variants in DNAJB4 cause a myopathy with early respiratory failure JOURNAL Acta Neuropathol 145 (1), 127-143 (2023) PUBMED 36264506 REMARK GeneRIF: Loss of function variants in DNAJB4 cause a myopathy with early respiratory failure. REFERENCE 3 (bases 1 to 4861) AUTHORS Luo WJ, Yu SL, Chang CC, Chien MH, Chang YL, Liao KM, Lin PC, Chung KP, Chuang YH, Chen JJW, Yang PC and Su KY. TITLE HLJ1 amplifies endotoxin-induced sepsis severity by promoting IL-12 heterodimerization in macrophages JOURNAL Elife 11, e76094 (2022) PUBMED 35983991 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 4861) AUTHORS Hsu MC, Luo WJ, Guo BC, Chen CH, Hu PA, Tsai YH, Su KY and Lee TS. TITLE Genetic Deletion of HLJ1 Does Not Affect Blood Coagulation in Mice JOURNAL Int J Mol Sci 23 (4), 2064 (2022) PUBMED 35216179 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 4861) AUTHORS Chen CH, Chang WH, Su KY, Ku WH, Chang GC, Hong QS, Hsiao YJ, Chen HC, Chen HY, Wu R, Yang PC, Chen JJ and Yu SL. TITLE HLJ1 is an endogenous Src inhibitor suppressing cancer progression through dual mechanisms JOURNAL Oncogene 35 (43), 5674-5685 (2016) PUBMED 27065329 REFERENCE 6 (bases 1 to 4861) AUTHORS Katoh M. TITLE Functional proteomics, human genetics and cancer biology of GIPC family members JOURNAL Exp Mol Med 45 (6), e26 (2013) PUBMED 23743496 REMARK Review article Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK006478.1 and AC123075.5. On Sep 30, 2017 this sequence version replaced NM_027287.4. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK006478.1, SRR7345562.3935428.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849380, SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-49 AK006478.1 2-50 50-68 AC123075.5 129123-129141 69-476 AK006478.1 69-476 477-477 AC123075.5 145766-145766 478-672 AK006478.1 478-672 673-731 AC123075.5 152355-152413 732-1265 AK006478.1 732-1265 1266-1410 AC123075.5 153982-154126 1411-1422 AK006478.1 1411-1422 1423-4861 AC123075.5 154139-157577 FEATURES Location/Qualifiers source 1..4861 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="3" /map="3 77.03 cM" gene 1..4861 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="DnaJ heat shock protein family (Hsp40) member B4" /db_xref="GeneID:67035" /db_xref="MGI:MGI:1914285" exon 1..249 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /inference="alignment:Splign:2.1.0" exon 250..491 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /inference="alignment:Splign:2.1.0" misc_feature 257..259 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="upstream in-frame stop codon" CDS 281..1294 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="isoform 1 is encoded by transcript variant 1; dnaJ homolog subfamily B member 4; DnaJ (Hsp40) homolog, subfamily B, member 4" /codon_start=1 /product="dnaJ homolog subfamily B member 4 isoform 1" /protein_id="NP_081563.2" /db_xref="CCDS:CCDS17915.1" /db_xref="GeneID:67035" /db_xref="MGI:MGI:1914285" /translation="
MGKDYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRRMGGGRDSEEMEIDGDPFSAFGFSMNGYPRDRNSVGPSRLKQDPPIIHELKVSLEEIYSGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSIPADIVFVIKDKEHPKFKRDGSNIVYTAKISLREALCGCSLNVPTMDGRNLPMSVTDIVKPGMRRRVIGYGLPFPKNPDQRGDLLIEFDVSFPDVISAASKEILRKHLPAS"
misc_feature 281..1276 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]; Region: DnaJ; COG0484" /db_xref="CDD:223560" misc_feature 644..646 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UDY4; propagated from UniProtKB/Swiss-Prot (Q9D832.1); phosphorylation site" misc_feature 722..724 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UDY4; propagated from UniProtKB/Swiss-Prot (Q9D832.1); phosphorylation site" exon 492..1060 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /inference="alignment:Splign:2.1.0" exon 1061..4861 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gcgcacggggcgtgcggggcgtccgcggcgacgctgcggaaccgtctgcggcccggcggcgggagcccaccatgctccggggcgccgagctgcctctgcccatgtctccacccgggccggtcacaagcggggaggaactcagaccaccgggcccttagttctcgagccgattgcctactgagtctcttatgtaaaatagtgtgggcgagcggatggtgaaagtatgaccgccctttgtcctttaaaaacggaaatctaagttcatttcaaggcattcgaaatggggaaagactattatcacattttgggaattgacaaaggagctacagatgaagatgttaaaaaggcttaccgaaagcaagccctcaaatttcacccggacaagaacaaatctcctcaagcagaggaaaaatttaaagaggtcgcagaagcgtatgaagtactgagtgatcctaaaaagagagaaatatatgatcagtttggcgaagaaggcttgaagggaggcgctggaggtactgatggacaaggaggtaccttcaggtacactttccacggagatcctcatgccacatttgcagcctttttcggaggttccaacccttttgaaatcttctttgggagacggatgggtggaggtcgagattctgaagaaatggaaatagatggagatccctttagtgcctttggattcagcatgaatggatatccaagagacaggaattctgtgggaccctcccgtctcaaacaagaccctcccattattcatgaacttaaagtatcgcttgaagaaatatatagtggctgcaccaaacggatgaagatttctcgaaaaagattaaatcctgacggaaggagttacagatctgaggacaaaattctcaccattgagatcaaaaaagggtggaaagaaggcaccaaaatcacttttccgagggaaggcgatgaaacaccaaatagtatcccagcagacattgtttttgttattaaagacaaagaacatcccaagtttaaaagagacggatcaaatatagtttatactgctaaaattagtttacgggaggcattgtgtggctgctcacttaatgtgccaacaatggacggaagaaacctacctatgtcagtcactgatattgtgaaacctgggatgaggagaagagttattggatatgggctgccatttccaaaaaaccctgaccagcgtggcgacctactgatagaatttgatgtgtccttcccagacgtcatatctgcagcatccaaagagatcctgaggaagcatctccctgcctcctaggatgagaagaaccttgctatccatagtttgataagacactgaaaatataaaagtaccggcagttgactgctgtgaattctgtgtaaagatgtgtaaactcttctgagggctcattaaactgcatgaatagacacagttcaaataggcaacgtgggtttttacagtagggatgaaaagtcattcactgtatttcatttctcccaaatcagaaatttttagtatttcatttacaagtaaaagttggttttgtggtctatggatatacttctagtaaatactagattatccaagtactgtgtgcatgtgcgtgtgtgtgtgtgtgtgtgtgtgtacgcgcgcgtgtgtgtctgtgtgtgctcgtgtctgtgtgtgtatctttaaatgatcagtgtgataggctcctttaataaaaattaaaattcttaagtgtatatgtaatatgtggagaataaaagccaaagtcatacagaaatgcagtctaggtgacattcagagatgctgtgttgggctggtaccagaatgcattgatgtgtgtgctttaccgttgtgacttctcaatattctgcagcgtttcttaagagcatggttgtaatgttcgtaaagcagacctcatcataagaagaaaatgaatgacattttctctcctgtggaagtcccaatagccagagctcctgatattttagaaacagatggtttttaagtggccacatgtaattttatgcagttgactatatatcttaaacttaataagctcattttgtggttcattagtttaaggtatttgtttactaacatgtttttagagaaaatactgttacttggcattaattgtccatttacagtgttctgttaagttcctcatgctatgcaccttacataatttccctaaagaacagtcatctatcactgtggtgttaaaccgcaatctggatataacaaacaccatcactgcttgtgggtaatgtgctgtcatcatataaatattctaccttttcatgtatatagattgcatttcttaggtgttttaatttttaaaatatatttacattctaaaaaattactgtcttctgttttatatctatcaaaagtgatgttatgaaaaattttttgtaaaacagttttcagaatgatatatatctatacataaatatatatggtatactgagtcctatagtctttttaatagaatgtgaagttatttagaaattctgtataaaattatagtaagcgtataccttgtggctttattgaaatagaattctcataagataaaattcacactaacctccctcatttttttggtactgttgactgacgtcagagctgcgtgcacactaagtgcctcccaccgtggagctgtgcccagcctccccctctctctctctttctttgtggtgtagttttgaatttcgtgtatccacagacctgtgcagtcaccatgaacagcttctgtgccccctctcccctcagcccctggagcactgatctgcttttcaagatggattctattgtagaatagaatcggtcggcatgcggctcctttatttgctgtcgttcacccagcacagcactgttctcaaggtccagtctggcctcattatcagtaacttcatcctttgtgtggcagatcatgtacttgggtagaatcccatttggtcagcttacctcttctttggtgttttgggcatctgggttctatctactcagtatgaataatgatgctatgagcatttgtaaacaaatttctgtgtggatagactgactgcattctctgaggtacatagttgagagtggaatggttaggaaaagctacatccattagttgcaaatagaaaatgttaaaaatgccagagagttgaggtaatcgcaccatctccttgaacatcatggaaattcacacagatataaagagctaaagtcttggagtgatggttgtagttcatattcgaaaccacatacccacagtattcaacttttgagttgtttgaggggggcagggtgtgtgtgtgtttgtgtctgcttgtttggaggtagggtcttactatgtagctctggctggtatgttgctccatgtgactcaagttcacgataaatttatgggaatttttctccctgcctcatagtggctggaatgaatggcatgtgccattcacaccacacaggctttgaaccaacaattattattgcagtcttattgagtaaacattttctctgagccaaaataaagggtttataaacacaaataatctttcagttagttcctttagtaataattattctaacaatcaatcaatcaatcaatcaatctgtactactcttagggctgagggtagggttcggtgacagtagtagaataaatgtacaaaatatataaatttagaggaaacatgcttccgagtgtagtaagtgcccattgttttgttaaatattgaattaatactgacagtaaaatgttaaaaattttcagatttaaactatgagagtacttttgacttctaagatgttccttttaggggctggaaagagggctcagaggcacttgcctctcgtgagtggacctgggttcagttcccaggacacacttggaggctcccagccgtctgaaactccagttccaaggacacctctttggtctccatgggcaccaggcatgcatgtggtgcacctacatacatgcagacaaacacagcatcctttttttttaaaattcttttaaagtgtttaatttactagtccttgcatagctcaaatgattttgcagcataatgagtccagtaaagcttcttattaaagatgtttgttaaaagaacacatatccacgggtcttatggctttccagggcaggtgttgtatttggtagctctgtagctgaggaacagttttcttaggacggttctaagcgagacgcactgttccatcacatctgccctccctgccacgtggtgcttcgtaacccatggccttgaaagcattgggctctgacatccacattagcttgtctctctggctattagtcggtcttggaggcaaggggttgaacaagcctcttgtttattcttaggaaactgtcattggaatgtttgtgattggatgaaatgaaattagtgcaagtgattggactcagtcaatggccttgatgaaacactcctctcacatttcaggaattacctgctcagtcttggggagtcaaggccaacatggctttcattcaataatagataatgtagtatggctgactatcttcacaatctctctctctgtatgtgtgtgtgtaggtgaacacgtgtgtttaagcaaatgtcttaacacgaactaatattaagataggaaagagtaatttatgctgtttataacaatgacaaatacacaaaatttagattcttggcttacaatatttatatttaaattatttatatttaatactgaagttttgtaaaattgattcagggaacaagactagaaagttactttgcctgggtttctaacgccctttaaccttttttgaaactcttttcttctagttttttctaaaaattaaatttgtcttttgacaataccataaatgaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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