2024-04-29 12:45:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001417720 1117 bp mRNA linear ROD 08-AUG-2023 DEFINITION Mus musculus succinate dehydrogenase complex assembly factor 3 (Sdhaf3), transcript variant 3, mRNA; nuclear gene for mitochondrial product. ACCESSION NM_001417720 VERSION NM_001417720.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1117) AUTHORS Dennis RA and McCammon MT. TITLE Acn9 is a novel protein of gluconeogenesis that is located in the mitochondrial intermembrane space JOURNAL Eur J Biochem 261 (1), 236-243 (1999) PUBMED 10103055 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC122240.4 and AC146599.3. ##Evidence-Data-START## Transcript exon combination :: SRR12282455.32014718.1, SRR7345562.2935458.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164133 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: reported by MitoCarta ##RefSeq-Attributes-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-197 AC122240.4 199239-199435 198-309 AC122240.4 200239-200350 310-1117 AC146599.3 132361-133168 FEATURES Location/Qualifiers source 1..1117 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 2.83 cM" gene 1..1117 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /note="succinate dehydrogenase complex assembly factor 3" /db_xref="GeneID:71238" /db_xref="MGI:MGI:1913288" exon 1..197 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /inference="alignment:Splign:2.1.0" CDS 24..278 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /note="isoform c precursor is encoded by transcript variant 3; protein ACN9 homolog, mitochondrial; SDH assembly factor 3; succinate dehydrogenase assembly factor 3, mitochondrial" /codon_start=1 /product="succinate dehydrogenase assembly factor 3, mitochondrial isoform c precursor" /protein_id="NP_001404649.1" /db_xref="GeneID:71238" /db_xref="MGI:MGI:1913288" /translation="
MPGKHVSRVRALYRRILLLHRALPPDLKALGDQYVKDEFRRHKTVGPGEAQRFLKEWENEGGERVLHDAEESCRISSHLENIRR"
misc_feature 48..200 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /note="LYR (leucine-tyrosine-arginine) motif found in mitochondrial succinate dehydrogenase assembly factor 3 (SDHAF3) and similar proteins; Region: Complex1_LYR_SDHAF3_LYRM10; cd20270" /db_xref="CDD:380765" exon 198..309 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /inference="alignment:Splign:2.1.0" exon 310..1117 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /inference="alignment:Splign:2.1.0" ORIGIN
accttctgcgcaggcgcggcgcgatgccggggaagcatgtctcgagagtccgggctttatataggcgaatcttgctgctacatcgggctctgcccccggacctcaaagccctgggtgaccagtacgtgaaggacgaatttaggagacataagactgttggtcctggcgaggcccagcgattcttgaaggaatgggagaatgaagggggagaaagagtattgcatgatgctgaagagtcttgcaggatctcctcccatcttgaaaatatcaggaggtgaaaggagttgggcatttctagagtgcatctagacgtacgcagcagtgctgtggcaacaagctgaggacagcagacaaagctcaactggaaaagcgtgttttggcacctctctcccagaagaaaaactcaatgactttcgtgatgagcaaattggacagttgcaagagctgatgcaagaggctactaaacccaataggcagtttagtatcactgagtctacaaaaccacagttgtgatacatgatcttaacaaagtggctacatttataacctgttacctcatctaccattgactctctaaaatatattctttcagctacagaatagtctcttatttttggacagtatgaacaatgcatgatcaaaatcataaatgacgcacttgtcatcattgcaatgacatatttatttgctgtgtggaatgtagttttatggaatttaatttctggactaaagaaaggtgttaaaaaagatatactttgggattatgctgaaatttttttgtatatgaatttgttttaaattctatccccatcaagtgttagcctcctgatttgtctctagcttcatcagttaaataaacatatcataataatggaagatgtagaattccaataagtttgctattagacatattgtgattctgaaagtcccaccatttctcctttagtagtacacacctggctatcactcagaatttcatctatgagtcacgttgaaagttttaagaaaagccttaagattcaattgttaagaatttcagttattgtctaaaggttggggagatgaaaaatactaagttggctcatacatttaaaaataaattatctatcaaaacctg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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