2024-04-29 12:27:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001410351 2507 bp mRNA linear ROD 10-SEP-2023 DEFINITION Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase 5 (St3gal5), transcript variant 5, mRNA. ACCESSION NM_001410351 XM_006505816 VERSION NM_001410351.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2507) AUTHORS Chowdhury S, Kumar R, Zepeda E, DeFrees S and Ledeen R. TITLE Synthetic GM1 improves motor and memory dysfunctions in mice with monoallelic or biallelic disruption of GM3 synthase JOURNAL FEBS Open Bio 13 (9), 1651-1657 (2023) PUBMED 37401916 REMARK GeneRIF: Synthetic GM1 improves motor and memory dysfunctions in mice with monoallelic or biallelic disruption of GM3 synthase. REFERENCE 2 (bases 1 to 2507) AUTHORS Bharathi SS, Zhang BB, Paul E, Zhang Y, Schmidt AV, Fowler B, Wu Y, Tiemeyer M, Inamori KI, Inokuchi JI and Goetzman ES. TITLE GM3 synthase deficiency increases brain glucose metabolism in mice JOURNAL Mol Genet Metab 137 (4), 342-348 (2022) PUBMED 36335793 REMARK GeneRIF: GM3 synthase deficiency increases brain glucose metabolism in mice. REFERENCE 3 (bases 1 to 2507) AUTHORS Arends M, Weber M, Papan C, Damm M, Surma MA, Spiegel C, Djannatian M, Li S, Connell L, Johannes L, Schifferer M, Klose C and Simons M. TITLE Ganglioside lipidomics of CNS myelination using direct infusion shotgun mass spectrometry JOURNAL iScience 25 (11), 105323 (2022) PUBMED 36310581 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 2507) AUTHORS Strekalova T, Veniaminova E, Svirin E, Kopeikina E, Veremeyko T, Yung AWY, Proshin A, Tan SZK, Khairuddin S, Lim LW, Lesch KP, Walitza S, Anthony DC and Ponomarev ED. TITLE Sex-Specific ADHD-like Behaviour, Altered Metabolic Functions, and Altered EEG Activity in Sialyltransferase ST3GAL5-Deficient Mice JOURNAL Biomolecules 11 (12), 1759 (2021) PUBMED 34944404 REMARK GeneRIF: Sex-Specific ADHD-like Behaviour, Altered Metabolic Functions, and Altered EEG Activity in Sialyltransferase ST3GAL5-Deficient Mice. Publication Status: Online-Only REFERENCE 5 (bases 1 to 2507) AUTHORS Suzuki M, Nagane M, Kato K, Yamauchi A, Shimizu T, Yamashita H, Aihara N, Kamiie J, Kawashima N, Naito S and Yamashita T. TITLE Endothelial ganglioside GM3 regulates angiogenesis in solid tumors JOURNAL Biochem Biophys Res Commun 569, 10-16 (2021) PUBMED 34216992 REFERENCE 6 (bases 1 to 2507) AUTHORS Takashima S and Tsuji S. TITLE Comparison of genomic structures of four members of beta-galactoside alpha2,3-sialyltransferase genes in the mouse JOURNAL Cytogenet Cell Genet 89 (1-2), 101-106 (2000) PUBMED 10894948 REFERENCE 7 (bases 1 to 2507) AUTHORS Kapitonov D, Bieberich E and Yu RK. TITLE Combinatorial PCR approach to homology-based cloning: cloning and expression of mouse and human GM3-synthase JOURNAL Glycoconj J 16 (7), 337-350 (1999) PUBMED 10619706 REFERENCE 8 (bases 1 to 2507) AUTHORS Takashima S, Tachida Y, Nakagawa T, Hamamoto T and Tsuji S. TITLE Quantitative analysis of expression of mouse sialyltransferase genes by competitive PCR JOURNAL Biochem Biophys Res Commun 260 (1), 23-27 (1999) PUBMED 10381338 REFERENCE 9 (bases 1 to 2507) AUTHORS Fukumoto S, Miyazaki H, Goto G, Urano T, Furukawa K and Furukawa K. TITLE Expression cloning of mouse cDNA of CMP-NeuAc:Lactosylceramide alpha2,3-sialyltransferase, an enzyme that initiates the synthesis of gangliosides JOURNAL J Biol Chem 274 (14), 9271-9276 (1999) PUBMED 10092602 REFERENCE 10 (bases 1 to 2507) AUTHORS Kono M, Takashima S, Liu H, Inoue M, Kojima N, Lee YC, Hamamoto T and Tsuji S. TITLE Molecular cloning and functional expression of a fifth-type alpha 2,3-sialyltransferase (mST3Gal V: GM3 synthase) JOURNAL Biochem Biophys Res Commun 253 (1), 170-175 (1998) PUBMED 9875239 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC127244.3. On Aug 4, 2022 this sequence version replaced XM_006505816.4. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR13422597.1068831.1, SRR13422592.92127.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849379, SAMN01164131 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-387 AC127244.3 89481-89867 388-448 AC127244.3 90790-90850 449-572 AC127244.3 120137-120260 573-684 AC127244.3 123925-124036 685-1028 AC127244.3 134013-134356 1029-1215 AC127244.3 138942-139128 1216-1374 AC127244.3 140892-141050 1375-2507 AC127244.3 145304-146436 FEATURES Location/Qualifiers source 1..2507 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 32.24 cM" gene 1..2507 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /note="ST3 beta-galactoside alpha-2,3-sialyltransferase 5" /db_xref="GeneID:20454" /db_xref="MGI:MGI:1339963" exon 1..387 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" CDS 97..1614 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /EC_number="2.4.3.9" /note="isoform c is encoded by transcript variant 5; sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase); ST3GalV; ganglioside GM3 synthase; mST3Gal V; GM3-specific sialytransferase" /codon_start=1 /product="lactosylceramide alpha-2,3-sialyltransferase isoform c" /protein_id="NP_001397280.1" /db_xref="GeneID:20454" /db_xref="MGI:MGI:1339963" /translation="
MHTEAVGGAARRPQKLRSQAAAPACRGTWRSPQSAERTPGSPDSGDPPLRYPRPSGSSPALRRRTRLLGDTGGGSRPLAAYMGAPGAACAGVDAALRPYANAGPEKRDLSAERKDQKTMPSEFTSAKLRSDCSRTSLQWYTRTQHKMRRPSLLIKDICKCTLVAFGVWLLYILILNYTAEECDMKRMHYVDPDRIKRAQSYAQEVLQKECRPRYAKTAMALLFEDRYSINLEPFVQKVPTASEAELKYDPPFGFRKFSSKVQSLLDMLPEHDFPEHLRAKACKRCVVVGNGGILHGLELGHALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDVEYYANDLFVTVLFKSVDFKWLQAMVKNESLPFWVRLFFWKQVAEKVPLQPKHFRILNPVIIKETAFDILQYSEPQSRFWGHDKNIPTIGVIAVVLATHLCDEVSLAGFGYDLSQPRTPLHYFDSQCMGAMHWQVMHNVTTETKFLLKLLKEGVVEDLSGGIH"
misc_feature <106..>462 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature 835..1584 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" exon 388..448 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 449..572 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 573..684 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 685..1028 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 1029..1215 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 1216..1374 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 1375..2507 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" ORIGIN
ggactgtccggggctgaattggcgcgagcgcggcgccgggggctggctggggcgcggggccccgggctggcggcttgccagcgctccctccctagcatgcacacagaggcggtgggcggcgcggcgcggaggccccagaagctgcgaagccaagcagcggcacctgcctgccgaggtacgtggcgcagcccccagtcggcagagcggacaccggggagcccagatagcggcgatccgcctttgcgataccccaggcccagcggctcctccccagccctgcgacgccggacgcgcctgctaggggacacgggcggagggtcgcggcccctggctgcctacatgggcgcccccggcgcagcctgcgcaggtgtggacgcggcgctgcggccctacgcaaatgctgggcctgagaagagggatttgtctgctgaaagaaaggaccagaaaacaatgccaagtgagttcacctctgcaaagctgagaagtgattgctcaaggacctccctgcaatggtacacccgaacccagcacaagatgagaagacccagcttgttaataaaagacatctgcaagtgcacgttggttgcatttggagtctggctcctgtacatcctcattttgaattacaccgctgaagaatgtgacatgaaaagaatgcactatgtggaccctgaccggataaagagagctcagagctatgctcaggaagtcttgcagaaggaatgtcggcccaggtacgcgaagacggctatggctctgttatttgaggacaggtacagcatcaacttggagccttttgtgcagaaggtccccacggccagtgaagctgagctcaagtatgacccgccttttggattccggaagttctccagtaaagtccagagcctcttggatatgctgcccgaacatgactttcctgaacacttgagagccaaggcctgcaagcgctgtgtggttgttgggaacgggggcatcctgcacggactagagctgggtcacgccctcaaccagttcgatgtggtaataaggttgaacagtgcgccagttgagggttactctgaacacgttgggaataaaactactataaggatgacttacccagagggtgcgccactgtcggacgttgaatactacgccaatgatttgttcgttactgttttatttaagagtgttgatttcaagtggcttcaagcaatggtaaaaaatgaaagcctgcccttttgggttcgcctcttcttttggaagcaagtggcagaaaaagtcccactccagccaaagcacttcaggattttgaacccagttatcatcaaagaaactgccttcgacatccttcagtactcagagcctcagtcaagattctggggccatgataagaacatccccacgatcggcgtcattgccgttgtcttggctacacatctgtgtgatgaagtcagcctggcaggctttggctacgacctcagtcaacccaggacccctctgcactactttgacagtcagtgcatgggcgccatgcactggcaggtcatgcacaatgtgaccacagagaccaagttcctcctgaagctcctcaaggagggcgtggtggaggacctcagcggcggcatccactgagaactcggaacacggcaaacctcacccagcaccgcagctgagagcgtggtgagcagcctccacagggacttcaccctgcagctgcttcgatgtgcagctagtgttttcaaactccacattttttttaaaaaaggaaaagaaagaacaacagcaacaacaaaagctctgctctgtgcacctcttcgtcctatttatttgaagtcagtgttggattttgcacagttttgtaagttaatcttaagaatgggattggaaggacttttcaaagagaattgtatagtttattgttttttaaggaagtaatttaatttgcagaaactgtacacacgtactctgctcaggtgttgaggtgggaggagaggggcttctggcccctggatgatggctgtgatgcccgatactggggtctgctgctctgtttggtagaactgatggcagagaaacttcctgcctccaggataaagggcttactcatcacctctggcagctgctagacaagttcataacccctttctgctagtccatctgccagctggctcgcaggactcaggcagggcagctgtcccggaggctgctggttggtgagccactgtcagctgagcgccgtgatgttgccccagggtggaagaagccacacttcctacactgtcagggcacttttaaacttctggaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcattctgcccttccaaatcatctaagtgttatttaaggcactctgctgtttgtatgagatggttcatagaaattatgacaaagcctttgttatccaggccatgggaagaggaaaaagaaaagaaagaaagaaaagaataaaagcttttgaggagcccctgtga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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