2024-03-29 16:52:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001356364 4619 bp mRNA linear ROD 05-AUG-2023 DEFINITION Mus musculus DnaJ heat shock protein family (Hsp40) member B4 (Dnajb4), transcript variant 4, mRNA. ACCESSION NM_001356364 VERSION NM_001356364.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4619) AUTHORS Inoue M, Noguchi S, Inoue YU, Iida A, Ogawa M, Bengoechea R, Pittman SK, Hayashi S, Watanabe K, Hosoi Y, Sano T, Takao M, Oya Y, Takahashi Y, Miyajima H, Weihl CC, Inoue T and Nishino I. TITLE Distinctive chaperonopathy in skeletal muscle associated with the dominant variant in DNAJB4 JOURNAL Acta Neuropathol 145 (2), 235-255 (2023) PUBMED 36512060 REMARK GeneRIF: Distinctive chaperonopathy in skeletal muscle associated with the dominant variant in DNAJB4. REFERENCE 2 (bases 1 to 4619) AUTHORS Weihl CC, Topf A, Bengoechea R, Duff J, Charlton R, Garcia SK, Dominguez-Gonzalez C, Alsaman A, Hernandez-Lain A, Franco LV, Sanchez MEP, Beecroft SJ, Goullee H, Daw J, Bhadra A, True H, Inoue M, Findlay AR, Laing N, Olive M, Ravenscroft G and Straub V. TITLE Loss of function variants in DNAJB4 cause a myopathy with early respiratory failure JOURNAL Acta Neuropathol 145 (1), 127-143 (2023) PUBMED 36264506 REMARK GeneRIF: Loss of function variants in DNAJB4 cause a myopathy with early respiratory failure. REFERENCE 3 (bases 1 to 4619) AUTHORS Luo WJ, Yu SL, Chang CC, Chien MH, Chang YL, Liao KM, Lin PC, Chung KP, Chuang YH, Chen JJW, Yang PC and Su KY. TITLE HLJ1 amplifies endotoxin-induced sepsis severity by promoting IL-12 heterodimerization in macrophages JOURNAL Elife 11, e76094 (2022) PUBMED 35983991 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 4619) AUTHORS Hsu MC, Luo WJ, Guo BC, Chen CH, Hu PA, Tsai YH, Su KY and Lee TS. TITLE Genetic Deletion of HLJ1 Does Not Affect Blood Coagulation in Mice JOURNAL Int J Mol Sci 23 (4), 2064 (2022) PUBMED 35216179 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 4619) AUTHORS Chen CH, Chang WH, Su KY, Ku WH, Chang GC, Hong QS, Hsiao YJ, Chen HC, Chen HY, Wu R, Yang PC, Chen JJ and Yu SL. TITLE HLJ1 is an endogenous Src inhibitor suppressing cancer progression through dual mechanisms JOURNAL Oncogene 35 (43), 5674-5685 (2016) PUBMED 27065329 REFERENCE 6 (bases 1 to 4619) AUTHORS Katoh M. TITLE Functional proteomics, human genetics and cancer biology of GIPC family members JOURNAL Exp Mol Med 45 (6), e26 (2013) PUBMED 23743496 REMARK Review article Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC123075.5. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR6116558.14456.1, SRR1660817.125719.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849381, SAMN00849382 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-249 AC123075.5 129074-129322 250-818 AC123075.5 152174-152742 819-4619 AC123075.5 153777-157577 FEATURES Location/Qualifiers source 1..4619 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="3" /map="3 77.03 cM" gene 1..4619 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="DnaJ heat shock protein family (Hsp40) member B4" /db_xref="GeneID:67035" /db_xref="MGI:MGI:1914285" exon 1..249 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /inference="alignment:Splign:2.1.0" misc_feature 243..245 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="upstream in-frame stop codon" exon 250..818 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /inference="alignment:Splign:2.1.0" CDS 384..1052 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="isoform 2 is encoded by transcript variant 4; dnaJ homolog subfamily B member 4; DnaJ (Hsp40) homolog, subfamily B, member 4" /codon_start=1 /product="dnaJ homolog subfamily B member 4 isoform 2" /protein_id="NP_001343293.1" /db_xref="GeneID:67035" /db_xref="MGI:MGI:1914285" /translation="
MGGGRDSEEMEIDGDPFSAFGFSMNGYPRDRNSVGPSRLKQDPPIIHELKVSLEEIYSGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSIPADIVFVIKDKEHPKFKRDGSNIVYTAKISLREALCGCSLNVPTMDGRNLPMSVTDIVKPGMRRRVIGYGLPFPKNPDQRGDLLIEFDVSFPDVISAASKEILRKHLPAS"
misc_feature 510..998 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747" /db_xref="CDD:199909" misc_feature order(522..524,567..584,627..629,699..701) /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="substrate binding site [polypeptide binding]; other site" /db_xref="CDD:199909" misc_feature order(810..815,822..827,888..899,990..998) /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:199909" exon 819..4619 /gene="Dnajb4" /gene_synonym="1700029A20Rik; 2010306G19Rik; 5730460G06Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gcgcacggggcgtgcggggcgtccgcggcgacgctgcggaaccgtctgcggcccggcggcgggagcccaccatgctccggggcgccgagctgcctctgcccatgtctccacccgggccggtcacaagcggggaggaactcagaccaccgggcccttagttctcgagccgattgcctactgagtctcttatgtaaaatagtgtgggcgagcggatggtgaaagtatgaccgccctttgtcctttaaaaacgcttgaagggaggcgctggaggtactgatggacaaggaggtaccttcaggtacactttccacggagatcctcatgccacatttgcagcctttttcggaggttccaacccttttgaaatcttctttgggagacggatgggtggaggtcgagattctgaagaaatggaaatagatggagatccctttagtgcctttggattcagcatgaatggatatccaagagacaggaattctgtgggaccctcccgtctcaaacaagaccctcccattattcatgaacttaaagtatcgcttgaagaaatatatagtggctgcaccaaacggatgaagatttctcgaaaaagattaaatcctgacggaaggagttacagatctgaggacaaaattctcaccattgagatcaaaaaagggtggaaagaaggcaccaaaatcacttttccgagggaaggcgatgaaacaccaaatagtatcccagcagacattgtttttgttattaaagacaaagaacatcccaagtttaaaagagacggatcaaatatagtttatactgctaaaattagtttacgggaggcattgtgtggctgctcacttaatgtgccaacaatggacggaagaaacctacctatgtcagtcactgatattgtgaaacctgggatgaggagaagagttattggatatgggctgccatttccaaaaaaccctgaccagcgtggcgacctactgatagaatttgatgtgtccttcccagacgtcatatctgcagcatccaaagagatcctgaggaagcatctccctgcctcctaggatgagaagaaccttgctatccatagtttgataagacactgaaaatataaaagtaccggcagttgactgctgtgaattctgtgtaaagatgtgtaaactcttctgagggctcattaaactgcatgaatagacacagttcaaataggcaacgtgggtttttacagtagggatgaaaagtcattcactgtatttcatttctcccaaatcagaaatttttagtatttcatttacaagtaaaagttggttttgtggtctatggatatacttctagtaaatactagattatccaagtactgtgtgcatgtgcgtgtgtgtgtgtgtgtgtgtgtgtacgcgcgcgtgtgtgtctgtgtgtgctcgtgtctgtgtgtgtatctttaaatgatcagtgtgataggctcctttaataaaaattaaaattcttaagtgtatatgtaatatgtggagaataaaagccaaagtcatacagaaatgcagtctaggtgacattcagagatgctgtgttgggctggtaccagaatgcattgatgtgtgtgctttaccgttgtgacttctcaatattctgcagcgtttcttaagagcatggttgtaatgttcgtaaagcagacctcatcataagaagaaaatgaatgacattttctctcctgtggaagtcccaatagccagagctcctgatattttagaaacagatggtttttaagtggccacatgtaattttatgcagttgactatatatcttaaacttaataagctcattttgtggttcattagtttaaggtatttgtttactaacatgtttttagagaaaatactgttacttggcattaattgtccatttacagtgttctgttaagttcctcatgctatgcaccttacataatttccctaaagaacagtcatctatcactgtggtgttaaaccgcaatctggatataacaaacaccatcactgcttgtgggtaatgtgctgtcatcatataaatattctaccttttcatgtatatagattgcatttcttaggtgttttaatttttaaaatatatttacattctaaaaaattactgtcttctgttttatatctatcaaaagtgatgttatgaaaaattttttgtaaaacagttttcagaatgatatatatctatacataaatatatatggtatactgagtcctatagtctttttaatagaatgtgaagttatttagaaattctgtataaaattatagtaagcgtataccttgtggctttattgaaatagaattctcataagataaaattcacactaacctccctcatttttttggtactgttgactgacgtcagagctgcgtgcacactaagtgcctcccaccgtggagctgtgcccagcctccccctctctctctctttctttgtggtgtagttttgaatttcgtgtatccacagacctgtgcagtcaccatgaacagcttctgtgccccctctcccctcagcccctggagcactgatctgcttttcaagatggattctattgtagaatagaatcggtcggcatgcggctcctttatttgctgtcgttcacccagcacagcactgttctcaaggtccagtctggcctcattatcagtaacttcatcctttgtgtggcagatcatgtacttgggtagaatcccatttggtcagcttacctcttctttggtgttttgggcatctgggttctatctactcagtatgaataatgatgctatgagcatttgtaaacaaatttctgtgtggatagactgactgcattctctgaggtacatagttgagagtggaatggttaggaaaagctacatccattagttgcaaatagaaaatgttaaaaatgccagagagttgaggtaatcgcaccatctccttgaacatcatggaaattcacacagatataaagagctaaagtcttggagtgatggttgtagttcatattcgaaaccacatacccacagtattcaacttttgagttgtttgaggggggcagggtgtgtgtgtgtttgtgtctgcttgtttggaggtagggtcttactatgtagctctggctggtatgttgctccatgtgactcaagttcacgataaatttatgggaatttttctccctgcctcatagtggctggaatgaatggcatgtgccattcacaccacacaggctttgaaccaacaattattattgcagtcttattgagtaaacattttctctgagccaaaataaagggtttataaacacaaataatctttcagttagttcctttagtaataattattctaacaatcaatcaatcaatcaatcaatctgtactactcttagggctgagggtagggttcggtgacagtagtagaataaatgtacaaaatatataaatttagaggaaacatgcttccgagtgtagtaagtgcccattgttttgttaaatattgaattaatactgacagtaaaatgttaaaaattttcagatttaaactatgagagtacttttgacttctaagatgttccttttaggggctggaaagagggctcagaggcacttgcctctcgtgagtggacctgggttcagttcccaggacacacttggaggctcccagccgtctgaaactccagttccaaggacacctctttggtctccatgggcaccaggcatgcatgtggtgcacctacatacatgcagacaaacacagcatcctttttttttaaaattcttttaaagtgtttaatttactagtccttgcatagctcaaatgattttgcagcataatgagtccagtaaagcttcttattaaagatgtttgttaaaagaacacatatccacgggtcttatggctttccagggcaggtgttgtatttggtagctctgtagctgaggaacagttttcttaggacggttctaagcgagacgcactgttccatcacatctgccctccctgccacgtggtgcttcgtaacccatggccttgaaagcattgggctctgacatccacattagcttgtctctctggctattagtcggtcttggaggcaaggggttgaacaagcctcttgtttattcttaggaaactgtcattggaatgtttgtgattggatgaaatgaaattagtgcaagtgattggactcagtcaatggccttgatgaaacactcctctcacatttcaggaattacctgctcagtcttggggagtcaaggccaacatggctttcattcaataatagataatgtagtatggctgactatcttcacaatctctctctctgtatgtgtgtgtgtaggtgaacacgtgtgtttaagcaaatgtcttaacacgaactaatattaagataggaaagagtaatttatgctgtttataacaatgacaaatacacaaaatttagattcttggcttacaatatttatatttaaattatttatatttaatactgaagttttgtaaaattgattcagggaacaagactagaaagttactttgcctgggtttctaacgccctttaaccttttttgaaactcttttcttctagttttttctaaaaattaaatttgtcttttgacaataccataaatgaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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