LOCUS       NM_001347246            1410 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus PRAME like 25 (Pramel25), transcript variant 2, mRNA.
ACCESSION   NM_001347246 XM_006538676
VERSION     NM_001347246.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Tang F, Barbacioru C, Nordman E, Bao S, Lee C, Wang X, Tuch BB,
            Heard E, Lao K and Surani MA.
  TITLE     Deterministic and stochastic allele specific gene expression in
            single mouse blastomeres
  JOURNAL   PLoS One 6 (6), e21208 (2011)
   PUBMED   21731673
REFERENCE   2  (bases 1 to 1410)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL626771.9.
            
            On Nov 19, 2016 this sequence version replaced XM_006538676.3.
            
            Transcript Variant: This variant (2) uses an alternate splice
            junction compared to variant 1, that causes a frameshift. The
            resulting isoform (2) has a shorter and distinct C-terminus
            compared to isoform 1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF913551.1, CF174133.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                AL626771.9         148068-148165       c
            99-409              AL626771.9         144488-144798       c
            410-557             AL626771.9         143823-143970       c
            558-1410            AL626771.9         141914-142766       c
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 77.96 cM"
     gene            1..1410
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /note="PRAME like 25"
                     /db_xref="GeneID:194227"
                     /db_xref="MGI:MGI:3650478"
     exon            1..98
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..596
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="oogenesin-like isoform 2"
                     /protein_id="NP_001334175.1"
                     /db_xref="CCDS:CCDS84818.1"
                     /db_xref="GeneID:194227"
                     /db_xref="MGI:MGI:3650478"
                     /translation="

MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVPEKALGDTLHQ"

     exon            99..409
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     exon            410..557
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     exon            558..1410
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atagcagggagaggaagtatagattaggtctcttggagcctggagtcacagctttcccttgcctgaatatggtgatctgtggccattgtccagatcaggatgagtctttagaagaagtcacagaggaatgctattccccacccaccctccagaatctggcaattcagagtctactgagggatgaggccttggccatttctgctctcacggacctgccccagagtctgttcccagtaatttttgaggaggccttcactgatggacatatagggatcttgaaggccatgatacctgaatggcccttcccatacctttctttaggaaagcagataaataattgcaacctggagactttgaaggctatccttgagggactagatatactgcttgcacaaaaggttcaaaccagtaggtgcaaactcagagtaattaattggagagatcatgacttgaacttatgggctggatcccatgaaggtgaaggcttatcagaattcactacagagaagcagccaattgagaacagtcctggctgtgaggtgaagaaagaattgaaggtgcctgaaaaagcccttggagacactttgcatcagtaactgtgacctctcacagtcagacttggattacctgccctattgcctgaatatttgtgaactcaaacatctgcatcttagtgatatatgtctacgtgatttactccttgagcctcttgggtttctccttgagagagttggagataccctgaaaatcctggaattggagtcatgttgtatagtggactttcagttcagtgccttgctgcctgccctaagccaatgttctcacctcagagaggtcactttctatgataataatttctctctgcctttcttgaaacaacttctacaccacacagccctgctgagtcagctgatcagtgagtgttaccctgcccctctggagtgctatgatgacagtggtgtaatactaacacacagattagaaagtttttgtcctgagctcctggatatactcaaagccaaaagacagctccaaagtgtctcctttgaaacaacccaatgctctaaatgtggtgggtgctacatttatgaccaggagacccaatgttgtcattttgtggaactactattagcttgattgcgaaaccgagaaatggaaacttagtattggggactgatgaaatcctaagtaaacgtccactgctaaatggagcatgaaaatgtcaatcacctaaaagtctgagatacataggaaagtcaataccttcctcagagctggtgaatggatgttgcatctgcagaaagtatcaagcacttgtagtttgtgtgtgttacaatagaggcaccattttatgaaactggcccaatctgttttctgtgtacaataaatgtgttgactttctgagttgca

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