2024-05-04 21:47:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001347246 1410 bp mRNA linear ROD 05-AUG-2023 DEFINITION Mus musculus PRAME like 25 (Pramel25), transcript variant 2, mRNA. ACCESSION NM_001347246 XM_006538676 VERSION NM_001347246.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1410) AUTHORS Tang F, Barbacioru C, Nordman E, Bao S, Lee C, Wang X, Tuch BB, Heard E, Lao K and Surani MA. TITLE Deterministic and stochastic allele specific gene expression in single mouse blastomeres JOURNAL PLoS One 6 (6), e21208 (2011) PUBMED 21731673 REFERENCE 2 (bases 1 to 1410) AUTHORS Piao Y, Ko NT, Lim MK and Ko MS. TITLE Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method JOURNAL Genome Res 11 (9), 1553-1558 (2001) PUBMED 11544199 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL626771.9. On Nov 19, 2016 this sequence version replaced XM_006538676.3. Transcript Variant: This variant (2) uses an alternate splice junction compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: CF913551.1, CF174133.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-98 AL626771.9 148068-148165 c 99-409 AL626771.9 144488-144798 c 410-557 AL626771.9 143823-143970 c 558-1410 AL626771.9 141914-142766 c FEATURES Location/Qualifiers source 1..1410 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="4" /map="4 77.96 cM" gene 1..1410 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /note="PRAME like 25" /db_xref="GeneID:194227" /db_xref="MGI:MGI:3650478" exon 1..98 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /inference="alignment:Splign:2.1.0" CDS 69..596 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /note="isoform 2 is encoded by transcript variant 2" /codon_start=1 /product="oogenesin-like isoform 2" /protein_id="NP_001334175.1" /db_xref="CCDS:CCDS84818.1" /db_xref="GeneID:194227" /db_xref="MGI:MGI:3650478" /translation="
MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVPEKALGDTLHQ"
exon 99..409 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /inference="alignment:Splign:2.1.0" exon 410..557 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /inference="alignment:Splign:2.1.0" exon 558..1410 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /inference="alignment:Splign:2.1.0" ORIGIN
atagcagggagaggaagtatagattaggtctcttggagcctggagtcacagctttcccttgcctgaatatggtgatctgtggccattgtccagatcaggatgagtctttagaagaagtcacagaggaatgctattccccacccaccctccagaatctggcaattcagagtctactgagggatgaggccttggccatttctgctctcacggacctgccccagagtctgttcccagtaatttttgaggaggccttcactgatggacatatagggatcttgaaggccatgatacctgaatggcccttcccatacctttctttaggaaagcagataaataattgcaacctggagactttgaaggctatccttgagggactagatatactgcttgcacaaaaggttcaaaccagtaggtgcaaactcagagtaattaattggagagatcatgacttgaacttatgggctggatcccatgaaggtgaaggcttatcagaattcactacagagaagcagccaattgagaacagtcctggctgtgaggtgaagaaagaattgaaggtgcctgaaaaagcccttggagacactttgcatcagtaactgtgacctctcacagtcagacttggattacctgccctattgcctgaatatttgtgaactcaaacatctgcatcttagtgatatatgtctacgtgatttactccttgagcctcttgggtttctccttgagagagttggagataccctgaaaatcctggaattggagtcatgttgtatagtggactttcagttcagtgccttgctgcctgccctaagccaatgttctcacctcagagaggtcactttctatgataataatttctctctgcctttcttgaaacaacttctacaccacacagccctgctgagtcagctgatcagtgagtgttaccctgcccctctggagtgctatgatgacagtggtgtaatactaacacacagattagaaagtttttgtcctgagctcctggatatactcaaagccaaaagacagctccaaagtgtctcctttgaaacaacccaatgctctaaatgtggtgggtgctacatttatgaccaggagacccaatgttgtcattttgtggaactactattagcttgattgcgaaaccgagaaatggaaacttagtattggggactgatgaaatcctaagtaaacgtccactgctaaatggagcatgaaaatgtcaatcacctaaaagtctgagatacataggaaagtcaataccttcctcagagctggtgaatggatgttgcatctgcagaaagtatcaagcacttgtagtttgtgtgtgttacaatagaggcaccattttatgaaactggcccaatctgttttctgtgtacaataaatgtgttgactttctgagttgca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]