2024-03-28 20:04:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001326356 1719 bp mRNA linear ROD 05-AUG-2023 DEFINITION Mus musculus RNA binding motif protein 7 (Rbm7), transcript variant 5, mRNA. ACCESSION NM_001326356 XM_006510552 VERSION NM_001326356.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1719) AUTHORS Fukushima K, Satoh T, Sugihara F, Sato Y, Okamoto T, Mitsui Y, Yoshio S, Li S, Nojima S, Motooka D, Nakamura S, Kida H, Standley DM, Morii E, Kanto T, Yanagita M, Matsuura Y, Nagasawa T, Kumanogoh A and Akira S. TITLE Dysregulated Expression of the Nuclear Exosome Targeting Complex Component Rbm7 in Nonhematopoietic Cells Licenses the Development of Fibrosis JOURNAL Immunity 52 (3), 542-556 (2020) PUBMED 32187520 REFERENCE 2 (bases 1 to 1719) AUTHORS Tiedje C, Lubas M, Tehrani M, Menon MB, Ronkina N, Rousseau S, Cohen P, Kotlyarov A and Gaestel M. TITLE p38MAPK/MK2-mediated phosphorylation of RBM7 regulates the human nuclear exosome targeting complex JOURNAL RNA 21 (2), 262-278 (2015) PUBMED 25525152 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY087243.1, AI853382.1, AK153504.1 and AA178228.1. On May 15, 2016 this sequence version replaced XM_006510552.1. Transcript Variant: This variant (5) lacks an internal exon , compared to variant 1, which results in a frameshift and early stop codon. It encodes isoform 3 which has a shorter and distinct C-terminus, compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: BY249612.1, AI853382.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164142, SAMN01164143 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-90 BY087243.1 2-91 91-336 AI853382.1 1-246 337-337 BY087243.1 338-338 338-441 AI853382.1 248-351 442-1707 AK153504.1 602-1867 1708-1719 AA178228.1 456-467 FEATURES Location/Qualifiers source 1..1719 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="9" /map="9 26.43 cM" gene 1..1719 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /note="RNA binding motif protein 7" /db_xref="GeneID:67010" /db_xref="MGI:MGI:1914260" exon 1..176 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /inference="alignment:Splign:2.1.0" misc_feature 54..56 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /note="upstream in-frame stop codon" CDS 81..431 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /note="isoform 3 is encoded by transcript variant 5; RNA-binding protein 7" /codon_start=1 /product="RNA-binding protein 7 isoform 3" /protein_id="NP_001313285.1" /db_xref="GeneID:67010" /db_xref="MGI:MGI:1914260" /translation="
MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSPTSTSPNR"
misc_feature 84..86 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /note="N-acetylglycine. /evidence=ECO:0000250|UniProtKB:Q9Y580; propagated from UniProtKB/Swiss-Prot (Q9CQT2.1); acetylation site" misc_feature 105..329 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /note="RNA recognition motif (RRM) found in vertebrate RNA-binding protein 7 (RBM7); Region: RRM_RBM7; cd12592" /db_xref="CDD:410005" misc_feature 153..185 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /note="propagated from UniProtKB/Swiss-Prot (Q9CQT2.1); Region: ZCCHC8 binding. /evidence=ECO:0000250|UniProtKB:Q9Y580" misc_feature 255..308 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /note="propagated from UniProtKB/Swiss-Prot (Q9CQT2.1); Region: ZCCHC8 binding. /evidence=ECO:0000250|UniProtKB:Q9Y580" exon 177..339 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /inference="alignment:Splign:2.1.0" exon 340..427 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /inference="alignment:Splign:2.1.0" exon 428..1719 /gene="Rbm7" /gene_synonym="1200007M24Rik; 1500011D06Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gtgagtgtttctgagggtgcgcagtagggtcggtcggccctgagcaggcagcctaggcctgggactggaacagcgcggagatgggggcggcggccgcagaggccgaccgcactctgttcgtgggtaacctggagacgaaggtgacagaggagctcctcttcgagctgttccaccaggctgggccggtaataaaagtgaaaatcccgaaagataaagatggcaaactgaagcagtttgcattcgtgaacttcaaacatgaagtgtctgttccctatgccatgaatctgctcaacggaatcaaacttttcgggaggcctatcaaaattcagtttagatcaggaagcagtcacgcctctcaggatgccagtgtgtcatatccccagcatcatgttggaaatttaagcccaacctccacatctcctaacagatgaacagtgttttcagacagatgtcatatgctgggaaatttggttctccacatgcggatcagttgggattttcaccatcagctcaaccacatggccatacctttaaccagtcttccagctcccagtggcgccaagatgcactgtcatcacagcgtaaaagacagaattctcacccctacctagcagatagacactatagccgtgagcagcgctactctgaccatgggtctgactatcattacagaggcagccgagaggatttctactatgacgacaggaatcatgatggctggagccatgactatgataacagaagggacagtagtagaggtgggaagtggccctcatccagacactaacaagcattccaaggacactgtttacagggccattttaggtccttttaattaagttgttggagaaatatttctaaaagctgtacagagtaatcccacaattttccacctgtctttgaaaaaaattttttttaaacctagtaacagtttgacagaactgagaactgtggctccttgtgtgctactttaattacctaacctcaggggttctgaagaggaaggttcatacaagagtgtgtcaccatcccggccatgtcagacagtctcagaaagatgaaacggataggttggttgtattctaaagcaaatattttaagtatctcaccttttatgttgcaagaaatttcatggtaatgaatcaatttggtatatataataggaaacatctaagttggaagtctgaaatggctgtctgcattttgttaataaatgagaaaatagaacttttcagtcatctgcttattaatagtttatttaaaacagtttattggctttgtttggagataaatcatatttcctaactcagaatttaagtacaaattctgtggtatgctcttgaattttaccacaattgaacatacattataaatctttactagttcattctaagaactttaaaattctttcattatatttgatgtatgactagtcgctcaggaagttaaatatctcaatgtatatttttacacaaaatgacagtgttggtgaaaattcgttttagaatgatgttcatacatagagaaaatgacagtgtttgactgcaaggattgtaattttgaaattttgtttaacaaaacttccatgtttcaagatcctgttgctctttgactgcaaaactgtttctaagaattcattccatgaaaaatgtggatcctctttataccacagcatttatactatgttccttttaatatattaaatacacaaaaagagaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]