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2024-03-28 20:04:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001326356            1719 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus RNA binding motif protein 7 (Rbm7), transcript variant
            5, mRNA.
ACCESSION   NM_001326356 XM_006510552
VERSION     NM_001326356.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Fukushima K, Satoh T, Sugihara F, Sato Y, Okamoto T, Mitsui Y,
            Yoshio S, Li S, Nojima S, Motooka D, Nakamura S, Kida H, Standley
            DM, Morii E, Kanto T, Yanagita M, Matsuura Y, Nagasawa T, Kumanogoh
            A and Akira S.
  TITLE     Dysregulated Expression of the Nuclear Exosome Targeting Complex
            Component Rbm7 in Nonhematopoietic Cells Licenses the Development
            of Fibrosis
  JOURNAL   Immunity 52 (3), 542-556 (2020)
   PUBMED   32187520
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Tiedje C, Lubas M, Tehrani M, Menon MB, Ronkina N, Rousseau S,
            Cohen P, Kotlyarov A and Gaestel M.
  TITLE     p38MAPK/MK2-mediated phosphorylation of RBM7 regulates the human
            nuclear exosome targeting complex
  JOURNAL   RNA 21 (2), 262-278 (2015)
   PUBMED   25525152
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY087243.1, AI853382.1, AK153504.1 and AA178228.1.
            
            On May 15, 2016 this sequence version replaced XM_006510552.1.
            
            Transcript Variant: This variant (5) lacks an internal exon ,
            compared to variant 1, which results in a frameshift and early stop
            codon. It encodes isoform 3 which has a shorter and distinct
            C-terminus, compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY249612.1, AI853382.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164142, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                BY087243.1         2-91
            91-336              AI853382.1         1-246
            337-337             BY087243.1         338-338
            338-441             AI853382.1         248-351
            442-1707            AK153504.1         602-1867
            1708-1719           AA178228.1         456-467
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 26.43 cM"
     gene            1..1719
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /note="RNA binding motif protein 7"
                     /db_xref="GeneID:67010"
                     /db_xref="MGI:MGI:1914260"
     exon            1..176
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    54..56
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /note="upstream in-frame stop codon"
     CDS             81..431
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /note="isoform 3 is encoded by transcript variant 5;
                     RNA-binding protein 7"
                     /codon_start=1
                     /product="RNA-binding protein 7 isoform 3"
                     /protein_id="NP_001313285.1"
                     /db_xref="GeneID:67010"
                     /db_xref="MGI:MGI:1914260"
                     /translation="
MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSPTSTSPNR"
     misc_feature    84..86
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /note="N-acetylglycine.
                     /evidence=ECO:0000250|UniProtKB:Q9Y580; propagated from
                     UniProtKB/Swiss-Prot (Q9CQT2.1); acetylation site"
     misc_feature    105..329
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     RNA-binding protein 7 (RBM7); Region: RRM_RBM7; cd12592"
                     /db_xref="CDD:410005"
     misc_feature    153..185
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9CQT2.1);
                     Region: ZCCHC8 binding.
                     /evidence=ECO:0000250|UniProtKB:Q9Y580"
     misc_feature    255..308
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9CQT2.1);
                     Region: ZCCHC8 binding.
                     /evidence=ECO:0000250|UniProtKB:Q9Y580"
     exon            177..339
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            340..427
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            428..1719
                     /gene="Rbm7"
                     /gene_synonym="1200007M24Rik; 1500011D06Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gtgagtgtttctgagggtgcgcagtagggtcggtcggccctgagcaggcagcctaggcctgggactggaacagcgcggagatgggggcggcggccgcagaggccgaccgcactctgttcgtgggtaacctggagacgaaggtgacagaggagctcctcttcgagctgttccaccaggctgggccggtaataaaagtgaaaatcccgaaagataaagatggcaaactgaagcagtttgcattcgtgaacttcaaacatgaagtgtctgttccctatgccatgaatctgctcaacggaatcaaacttttcgggaggcctatcaaaattcagtttagatcaggaagcagtcacgcctctcaggatgccagtgtgtcatatccccagcatcatgttggaaatttaagcccaacctccacatctcctaacagatgaacagtgttttcagacagatgtcatatgctgggaaatttggttctccacatgcggatcagttgggattttcaccatcagctcaaccacatggccatacctttaaccagtcttccagctcccagtggcgccaagatgcactgtcatcacagcgtaaaagacagaattctcacccctacctagcagatagacactatagccgtgagcagcgctactctgaccatgggtctgactatcattacagaggcagccgagaggatttctactatgacgacaggaatcatgatggctggagccatgactatgataacagaagggacagtagtagaggtgggaagtggccctcatccagacactaacaagcattccaaggacactgtttacagggccattttaggtccttttaattaagttgttggagaaatatttctaaaagctgtacagagtaatcccacaattttccacctgtctttgaaaaaaattttttttaaacctagtaacagtttgacagaactgagaactgtggctccttgtgtgctactttaattacctaacctcaggggttctgaagaggaaggttcatacaagagtgtgtcaccatcccggccatgtcagacagtctcagaaagatgaaacggataggttggttgtattctaaagcaaatattttaagtatctcaccttttatgttgcaagaaatttcatggtaatgaatcaatttggtatatataataggaaacatctaagttggaagtctgaaatggctgtctgcattttgttaataaatgagaaaatagaacttttcagtcatctgcttattaatagtttatttaaaacagtttattggctttgtttggagataaatcatatttcctaactcagaatttaagtacaaattctgtggtatgctcttgaattttaccacaattgaacatacattataaatctttactagttcattctaagaactttaaaattctttcattatatttgatgtatgactagtcgctcaggaagttaaatatctcaatgtatatttttacacaaaatgacagtgttggtgaaaattcgttttagaatgatgttcatacatagagaaaatgacagtgtttgactgcaaggattgtaattttgaaattttgtttaacaaaacttccatgtttcaagatcctgttgctctttgactgcaaaactgtttctaagaattcattccatgaaaaatgtggatcctctttataccacagcatttatactatgttccttttaatatattaaatacacaaaaagagaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]