2024-05-05 00:26:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001324471 1582 bp mRNA linear ROD 12-DEC-2023 DEFINITION Mus musculus PRAME like 51 (Pramel51), transcript variant 2, mRNA. ACCESSION NM_001324471 XM_006515317 VERSION NM_001324471.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1582) AUTHORS Wan Y, Yang S, Li T, Cai Y, Wu X, Zhang M, Muhammad T, Huang T, Lv Y, Chan WY, Lu G, Li J, Sha QQ, Chen ZJ and Liu H. TITLE LSM14B is essential for oocyte meiotic maturation by regulating maternal mRNA storage and clearance JOURNAL Nucleic Acids Res 51 (21), 11652-11667 (2023) PUBMED 37889087 REFERENCE 2 (bases 1 to 1582) AUTHORS Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P, Eppig JJ, Solter D and Knowles BB. TITLE Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo JOURNAL Genes Dev 20 (19), 2713-2727 (2006) PUBMED 17015433 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CA560787.1, BC094894.1 and CT030175.7. On May 6, 2016 this sequence version replaced XM_006515317.2. ##Evidence-Data-START## Transcript exon combination :: BC094894.1, AK139576.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN01164134 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-127 CA560787.1 1-127 128-1218 BC094894.1 1-1091 1219-1219 CT030175.7 62118-62118 1220-1568 BC094894.1 1093-1441 1569-1582 CT030175.7 62468-62481 FEATURES Location/Qualifiers source 1..1582 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="12" /map="12 42.35 cM" gene 1..1582 /gene="Pramel51" /gene_synonym="Gm10436" /note="PRAME like 51" /db_xref="GeneID:100039315" /db_xref="MGI:MGI:3704393" exon 1..155 /gene="Pramel51" /gene_synonym="Gm10436" /inference="alignment:Splign:2.1.0" misc_feature 130..132 /gene="Pramel51" /gene_synonym="Gm10436" /note="upstream in-frame stop codon" exon 156..731 /gene="Pramel51" /gene_synonym="Gm10436" /inference="alignment:Splign:2.1.0" CDS 325..1302 /gene="Pramel51" /gene_synonym="Gm10436" /note="isoform 2 is encoded by transcript variant 2; oogenesin like" /codon_start=1 /product="oogenesin like isoform 2" /protein_id="NP_001311400.1" /db_xref="CCDS:CCDS88383.1" /db_xref="GeneID:100039315" /db_xref="MGI:MGI:3704393" /translation="
MKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL"
exon 732..1582 /gene="Pramel51" /gene_synonym="Gm10436" /inference="alignment:Splign:2.1.0" ORIGIN
tagctgggagggtgtggctacaaagggagggttcagctgaaaggtatataatgattcatagcaaggagaggaagtatagattaggtctcttggagcctggagtcacagctttcccttgcccgaatatggtgatctgtctccattgtccagatcagtaggtgcaaactcagagtaattaattggagagaagatgacttgaagatatgggctggatcccatgaaggtgaaggcttaccagatttcaggacagagaagcagccaattgagaacagtcctggctgtgaggtgaagaaagaattgaaggtgacgactgaagtccttcgcatgaagggcagacttgatgaatctaccacatacttgttgcagtgggcccagcagagaaaagattctattcatctattctgtagaaagctactaattgaaggcttaaccaaagcctcagtgatagaaatcttcaaaactgtacacgcagactgtatacaggagcttatcctaagatgtatctgcatagaagagttggcttttcttaatccctacctgaaactgatgaaaagtcttttcacactcacactagatcacatcataggtaccttcactttgggtgattctgaaaagcttgatgaggagacaatattcagcttgatttctcaacttcccacactccactgtctccagaaactctacataaatgatgtcccttttataaaaggcaacctgaaagaatacctcaggtgcctgaaaaagcccttggagacactttgcatcagtaactgtgacctctcacagtcagacttggattgcctgcccttttgcctgaatatttgtgaactcaaacatctgcatattagtgatatatatttatgtgatttactccttgagcctcttggttttctccttgagagagttggagataccctgaaaaccctggaattggtttcatgttgtatagtggactttcagttcagtgccttgctgcctgccctaagccaatgttctcacctcagagaggtcactttctatgataatgatgtttctctgcctttcttgaaacaacttctacaccacacagccctgctgagtcagctgatctatgagtgttaccctgcccctatagagtgctatgatgacagtggtgtaatactaacacacagattagaaagtttttgtcctgagctcctggatatactgagagccaaaagacagctccatagtgtctcctttcaaacaaccaaatgctctaaatgtggtgggtgctacatttatgatcggcatacccaatgttgccgttttgtggaactatgataagcttgattgtgaaactgagaaatagaaacttagtattggggactgatgaaatcctaagtgaatgtccactgctaaatggagcatgaaaatgtcaatcacctaaaagtctgagatacacgggaaagtcaataacttcctctgagctggtgaatggatgttgcatctgtagaaagaatcaagcacttgtagtttgaatgtgttacaatagaagcaccattttatgagactggcccaatctgttgactgcatacaataaatatgttgacttttttttttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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