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2024-03-28 17:31:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001114637            1383 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus jumonji domain containing 7 (Jmjd7), mRNA.
ACCESSION   NM_001114637
VERSION     NM_001114637.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1383)
  AUTHORS   Liu H, Wang C, Lee S, Ning F, Wang Y, Zhang Q, Chen Z, Zang J, Nix
            J, Dai S, Marrack P, Hagman J, Kappler J and Zhang G.
  TITLE     Specific Recognition of Arginine Methylated Histone Tails by JMJD5
            and JMJD7
  JOURNAL   Sci Rep 8 (1), 3275 (2018)
   PUBMED   29459673
  REMARK    GeneRIF: Recognition between JMJD5/JMJD7 and histone substrates is
            specific, which is reflected by the binding data between enzymes
            and substrates. High structural similarity between JMJD5 and JMJD7
            is reflected by the shared common substrates and high binding
            affinity.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL833774.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC016255.1, SRR7652917.80965.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-94                AL833774.4         160455-160548       c
            95-248              AL833774.4         157820-157973       c
            249-502             AL833774.4         157489-157742       c
            503-559             AL833774.4         157159-157215       c
            560-655             AL833774.4         156629-156724       c
            656-732             AL833774.4         156380-156456       c
            733-892             AL833774.4         156031-156190       c
            893-1383            AL833774.4         155427-155917       c
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 60.09 cM"
     gene            1..1383
                     /gene="Jmjd7"
                     /note="jumonji domain containing 7"
                     /db_xref="GeneID:433466"
                     /db_xref="MGI:MGI:3845785"
     exon            1..94
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..981
                     /gene="Jmjd7"
                     /EC_number="1.14.11.63"
                     /note="jmjC domain-containing protein 7; jumonji
                     domain-containing protein 7; L-lysine (3S)-hydroxylase
                     Jmjd7"
                     /codon_start=1
                     /product="bifunctional peptidase and (3S)-lysyl
                     hydroxylase Jmjd7"
                     /protein_id="NP_001108109.1"
                     /db_xref="CCDS:CCDS50676.1"
                     /db_xref="GeneID:433466"
                     /db_xref="MGI:MGI:3845785"
                     /translation="
MAEAALEAVRRALQEFPAAARDLNVPRVVPYLDEPPSPLCFYRDWVCPNRPCIIRNALQHWPALQKWSLSYLRATVGSTEVSVAVTPDGYADAVRGDRFVMPAERRLPISHVLDVLEGRAQHPGVLYVQKQCSNLPTELPQLLSDIESHVPWASESLGKMPDAVNFWLGDASAVTSLHKDHYENLYCVVSGEKHFLLHPPSDRPFIPYNLYTPATYQLTEEGTFRVVDEEAMEKVPWIPLDPLAPDLTQYPSYSQAQALHCTVRAGEMLYLPALWFHHVQQSHGCIAVNFWYDMEYDLKYSYFQLMDTLTRATGLD"
     misc_feature    142..921
                     /gene="Jmjd7"
                     /note="Cupin-like domain; Region: Cupin_8; pfam13621"
                     /db_xref="CDD:433355"
     exon            95..248
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            249..502
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            503..559
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            560..655
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            656..732
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            733..892
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1383
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1355..1360
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Jmjd7"
     polyA_site      1373
                     /gene="Jmjd7"
ORIGIN      
ataggggcgggttcttgtcccgcggccgtcatggcggaggcggctctggaggcagttcggagggcgttgcaagagttcccggcggcggctcgcgacctcaatgtacctcgtgttgtgccctacctggatgagcccccaagcccactctgcttctaccgggattgggtgtgccccaacaggccctgcattatccgaaatgctctgcagcactggccagccctccagaagtggtccctgtcctacttaagagccacggtgggctccacggaggtgagtgtggctgtgactccagatggttatgcggacgcggtgcgaggggaccgctttgtgatgcctgctgaacgccgcctgcccataagccatgtactggatgtgttggaaggtcgggcccagcacccaggagtcctctatgtgcagaaacagtgttccaacctgcccactgagctgccccagcttctgtctgacattgagtcccatgtgccctgggcctctgagtcactggggaagatgcctgatgccgtgaacttctggctgggtgatgcatctgcagtgacatccttgcacaaggaccactatgagaatctgtactgtgtagtctctggcgagaaacacttcttgttacatccacccagcgaccggcccttcatcccttacaatctctacacaccagcaacctaccagctgactgaagagggcacttttagggtggtggacgaggaagccatggagaaggtaccctggatcccactggaccccttggctccagacctgacccagtaccccagttacagccaggcacaggcccttcactgcacagtgcgggccggcgagatgctgtacctgccagctctgtggttccaccatgtccagcagtcccacggctgtattgctgtgaatttctggtatgacatggagtatgacctcaagtacagttactttcaactgatggacaccctcaccagggccacaggccttgactgaagagaccctcagacactgcaaaggacagcggggatcgacggggtcatttgattctggaggcagcctagagttcgaatatgtcctggctgctgcccaggttcccgcctgtgttgggatcaggcattgcaggaacttggaatttagttggaggtccaagaaatgccagacaggtctgggtgaacgtgcccaggaaattgccacacaggtgacaaggaagcacggatcaggtacagcagtgcctctcaccagtgctatgaccttgggtgagtcactgcatgttagcatcagtcccttgtctgtaaagtggagataataatggctctggctcccagagctttgggaataggcatgggccaatgtagaggaagcggtcaataaaaggtgacacttgatacacttgtt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]