2024-03-28 17:31:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001114637 1383 bp mRNA linear ROD 04-AUG-2023 DEFINITION Mus musculus jumonji domain containing 7 (Jmjd7), mRNA. ACCESSION NM_001114637 VERSION NM_001114637.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1383) AUTHORS Liu H, Wang C, Lee S, Ning F, Wang Y, Zhang Q, Chen Z, Zang J, Nix J, Dai S, Marrack P, Hagman J, Kappler J and Zhang G. TITLE Specific Recognition of Arginine Methylated Histone Tails by JMJD5 and JMJD7 JOURNAL Sci Rep 8 (1), 3275 (2018) PUBMED 29459673 REMARK GeneRIF: Recognition between JMJD5/JMJD7 and histone substrates is specific, which is reflected by the binding data between enzymes and substrates. High structural similarity between JMJD5 and JMJD7 is reflected by the shared common substrates and high binding affinity. Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL833774.4. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC016255.1, SRR7652917.80965.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-94 AL833774.4 160455-160548 c 95-248 AL833774.4 157820-157973 c 249-502 AL833774.4 157489-157742 c 503-559 AL833774.4 157159-157215 c 560-655 AL833774.4 156629-156724 c 656-732 AL833774.4 156380-156456 c 733-892 AL833774.4 156031-156190 c 893-1383 AL833774.4 155427-155917 c FEATURES Location/Qualifiers source 1..1383 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /chromosome="2" /map="2 60.09 cM" gene 1..1383 /gene="Jmjd7" /note="jumonji domain containing 7" /db_xref="GeneID:433466" /db_xref="MGI:MGI:3845785" exon 1..94 /gene="Jmjd7" /inference="alignment:Splign:2.1.0" CDS 31..981 /gene="Jmjd7" /EC_number="1.14.11.63" /note="jmjC domain-containing protein 7; jumonji domain-containing protein 7; L-lysine (3S)-hydroxylase Jmjd7" /codon_start=1 /product="bifunctional peptidase and (3S)-lysyl hydroxylase Jmjd7" /protein_id="NP_001108109.1" /db_xref="CCDS:CCDS50676.1" /db_xref="GeneID:433466" /db_xref="MGI:MGI:3845785" /translation="
MAEAALEAVRRALQEFPAAARDLNVPRVVPYLDEPPSPLCFYRDWVCPNRPCIIRNALQHWPALQKWSLSYLRATVGSTEVSVAVTPDGYADAVRGDRFVMPAERRLPISHVLDVLEGRAQHPGVLYVQKQCSNLPTELPQLLSDIESHVPWASESLGKMPDAVNFWLGDASAVTSLHKDHYENLYCVVSGEKHFLLHPPSDRPFIPYNLYTPATYQLTEEGTFRVVDEEAMEKVPWIPLDPLAPDLTQYPSYSQAQALHCTVRAGEMLYLPALWFHHVQQSHGCIAVNFWYDMEYDLKYSYFQLMDTLTRATGLD"
misc_feature 142..921 /gene="Jmjd7" /note="Cupin-like domain; Region: Cupin_8; pfam13621" /db_xref="CDD:433355" exon 95..248 /gene="Jmjd7" /inference="alignment:Splign:2.1.0" exon 249..502 /gene="Jmjd7" /inference="alignment:Splign:2.1.0" exon 503..559 /gene="Jmjd7" /inference="alignment:Splign:2.1.0" exon 560..655 /gene="Jmjd7" /inference="alignment:Splign:2.1.0" exon 656..732 /gene="Jmjd7" /inference="alignment:Splign:2.1.0" exon 733..892 /gene="Jmjd7" /inference="alignment:Splign:2.1.0" exon 893..1383 /gene="Jmjd7" /inference="alignment:Splign:2.1.0" regulatory 1355..1360 /regulatory_class="polyA_signal_sequence" /gene="Jmjd7" polyA_site 1373 /gene="Jmjd7" ORIGIN
ataggggcgggttcttgtcccgcggccgtcatggcggaggcggctctggaggcagttcggagggcgttgcaagagttcccggcggcggctcgcgacctcaatgtacctcgtgttgtgccctacctggatgagcccccaagcccactctgcttctaccgggattgggtgtgccccaacaggccctgcattatccgaaatgctctgcagcactggccagccctccagaagtggtccctgtcctacttaagagccacggtgggctccacggaggtgagtgtggctgtgactccagatggttatgcggacgcggtgcgaggggaccgctttgtgatgcctgctgaacgccgcctgcccataagccatgtactggatgtgttggaaggtcgggcccagcacccaggagtcctctatgtgcagaaacagtgttccaacctgcccactgagctgccccagcttctgtctgacattgagtcccatgtgccctgggcctctgagtcactggggaagatgcctgatgccgtgaacttctggctgggtgatgcatctgcagtgacatccttgcacaaggaccactatgagaatctgtactgtgtagtctctggcgagaaacacttcttgttacatccacccagcgaccggcccttcatcccttacaatctctacacaccagcaacctaccagctgactgaagagggcacttttagggtggtggacgaggaagccatggagaaggtaccctggatcccactggaccccttggctccagacctgacccagtaccccagttacagccaggcacaggcccttcactgcacagtgcgggccggcgagatgctgtacctgccagctctgtggttccaccatgtccagcagtcccacggctgtattgctgtgaatttctggtatgacatggagtatgacctcaagtacagttactttcaactgatggacaccctcaccagggccacaggccttgactgaagagaccctcagacactgcaaaggacagcggggatcgacggggtcatttgattctggaggcagcctagagttcgaatatgtcctggctgctgcccaggttcccgcctgtgttgggatcaggcattgcaggaacttggaatttagttggaggtccaagaaatgccagacaggtctgggtgaacgtgcccaggaaattgccacacaggtgacaaggaagcacggatcaggtacagcagtgcctctcaccagtgctatgaccttgggtgagtcactgcatgttagcatcagtcccttgtctgtaaagtggagataataatggctctggctcccagagctttgggaataggcatgggccaatgtagaggaagcggtcaataaaaggtgacacttgatacacttgtt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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