2024-11-01 08:26:51, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001110152 676 bp mRNA linear ROD 13-JAN-2022 DEFINITION Mus musculus prefoldin 4 (Pfdn4), transcript variant 1, mRNA. ACCESSION NM_001110152 VERSION NM_001110152.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 676) AUTHORS Ewart-Toland A, Briassouli P, de Koning JP, Mao JH, Yuan J, Chan F, MacCarthy-Morrogh L, Ponder BA, Nagase H, Burn J, Ball S, Almeida M, Linardopoulos S and Balmain A. TITLE Identification of Stk6/STK15 as a candidate low-penetrance tumor-susceptibility gene in mouse and human JOURNAL Nat Genet 34 (4), 403-412 (2003) PUBMED 12881723 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL954701.10. On Jan 13, 2022 this sequence version replaced NM_001110152.2. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). ##Evidence-Data-START## Transcript exon combination :: BU525981.1, CO803951.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-32 AL954701.10 10052-10083 33-140 AL954701.10 14353-14460 141-281 AL954701.10 15164-15304 282-676 AL954701.10 17287-17681 FEATURES Location/Qualifiers source 1..676 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="2" /map="2 91.91 cM" gene 1..676 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="prefoldin 4" /db_xref="GeneID:109054" /db_xref="MGI:MGI:1923512" exon 1..32 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /inference="alignment:Splign:2.1.0" CDS 9..413 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="prefoldin subunit 4 isoform 1" /protein_id="NP_001103622.1" /db_xref="CCDS:CCDS50807.1" /db_xref="GeneID:109054" /db_xref="MGI:MGI:1923512" /translation="
MAATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKHLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEDAKKTLQEEIDALESRVASIQRVLADLKVQLYAKFGSNINLEADES"
misc_feature 63..374 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="prefoldin subunit 4; Region: Prefoldin_4; cd23165" /db_xref="CDD:467481" misc_feature order(63..65,69..80,87..92,99..101,303..305,312..317, 321..326,333..338,342..350,354..362,366..374) /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="prefoldin/TRiC interface [polypeptide binding]; other site" /db_xref="CDD:467481" misc_feature 63..188 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:467481" misc_feature order(174..179,189..191,204..206,210..239,255..257, 267..269) /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="prefoldin oligomer interface [polypeptide binding]; other site" /db_xref="CDD:467481" misc_feature 249..374 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:467481" exon 33..140 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /inference="alignment:Splign:2.1.0" exon 141..281 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /inference="alignment:Splign:2.1.0" exon 282..676 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /inference="alignment:Splign:2.1.0" ORIGIN
agtccaagatggcggccaccatgaagaaggcggctgcagaagacgtgaatgttactttcgaagatcagcaaaaaataaacaaatttgctcggaatacgagtcgaatcacagagctaaaggaggaaatagaagtgaagaagaaacatctccagaacttagaggacgcctgtgatgacatcatgctggcagatgacgactgcttaatgattccctaccagatcggagacgttttcatcagccactctcaagaagaaacacaggaaatgttagaagatgcaaagaaaactttgcaagaagagattgatgccttagagtccagagtggcgtccatccagcgggtgttagccgacctgaaggtgcagctatacgcgaaatttggcagcaacataaacctcgaggcagatgaaagctaaacattttataatactttttttttatcttgttttaataaacttgaatattgtcttaaatgataatttcccttctccaaatgaaacaaaaggaaaactttcttttttaagaattttcatttaattaatggaaacgcctattttcacatgtcttgcttatttattttatatttttaaaagaagacagtgttcatgtatgtattttgcataatgattgtatcaattttaggagctttatgtcatgttattaaaatcggttaaacagt
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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