2024-04-29 14:11:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001077713 1005 bp mRNA linear ROD 08-AUG-2023 DEFINITION Mus musculus succinate dehydrogenase complex assembly factor 3 (Sdhaf3), transcript variant 2, mRNA; nuclear gene for mitochondrial product. ACCESSION NM_001077713 XM_355744 XM_905385 XM_985595 VERSION NM_001077713.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1005) AUTHORS Dennis RA and McCammon MT. TITLE Acn9 is a novel protein of gluconeogenesis that is located in the mitochondrial intermembrane space JOURNAL Eur J Biochem 261 (1), 236-243 (1999) PUBMED 10103055 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC122240.4 and AC146599.3. On Mar 9, 2023 this sequence version replaced NM_001077713.1. ##Evidence-Data-START## Transcript exon combination :: BC061217.1, AK028031.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: reported by MitoCarta RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-197 AC122240.4 199239-199435 198-1005 AC146599.3 132361-133168 FEATURES Location/Qualifiers source 1..1005 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 2.83 cM" gene 1..1005 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /note="succinate dehydrogenase complex assembly factor 3" /db_xref="GeneID:71238" /db_xref="MGI:MGI:1913288" exon 1..197 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /inference="alignment:Splign:2.1.0" CDS 24..401 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /note="isoform b precursor is encoded by transcript variant 2; protein ACN9 homolog, mitochondrial; SDH assembly factor 3; succinate dehydrogenase assembly factor 3, mitochondrial" /codon_start=1 /product="succinate dehydrogenase assembly factor 3, mitochondrial isoform b precursor" /protein_id="NP_001071181.1" /db_xref="CCDS:CCDS39423.1" /db_xref="GeneID:71238" /db_xref="MGI:MGI:1913288" /translation="
MPGKHVSRVRALYRRILLLHRALPPDLKALGDQYVKDEFRRHKTVGPGEAQRFLKEWETYAAVLWQQAEDSRQSSTGKACFGTSLPEEKLNDFRDEQIGQLQELMQEATKPNRQFSITESTKPQL"
transit_peptide 24..113 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /note="Mitochondrion. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q8BQU3.1)" misc_feature 48..215 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /note="LYR (leucine-tyrosine-arginine) motif found in mitochondrial succinate dehydrogenase assembly factor 3 (SDHAF3) and similar proteins; Region: Complex1_LYR_SDHAF3_LYRM10; cd20270" /db_xref="CDD:380765" mat_peptide 114..398 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /product="Succinate dehydrogenase assembly factor 3, mitochondrial. /id=PRO_0000042654" /note="propagated from UniProtKB/Swiss-Prot (Q8BQU3.1)" exon 198..1005 /gene="Sdhaf3" /gene_synonym="0610005M07Rik; 4933430A16Rik; Acn9" /inference="alignment:Splign:2.1.0" ORIGIN
accttctgcgcaggcgcggcgcgatgccggggaagcatgtctcgagagtccgggctttatataggcgaatcttgctgctacatcgggctctgcccccggacctcaaagccctgggtgaccagtacgtgaaggacgaatttaggagacataagactgttggtcctggcgaggcccagcgattcttgaaggaatgggagacgtacgcagcagtgctgtggcaacaagctgaggacagcagacaaagctcaactggaaaagcgtgttttggcacctctctcccagaagaaaaactcaatgactttcgtgatgagcaaattggacagttgcaagagctgatgcaagaggctactaaacccaataggcagtttagtatcactgagtctacaaaaccacagttgtgatacatgatcttaacaaagtggctacatttataacctgttacctcatctaccattgactctctaaaatatattctttcagctacagaatagtctcttatttttggacagtatgaacaatgcatgatcaaaatcataaatgacgcacttgtcatcattgcaatgacatatttatttgctgtgtggaatgtagttttatggaatttaatttctggactaaagaaaggtgttaaaaaagatatactttgggattatgctgaaatttttttgtatatgaatttgttttaaattctatccccatcaagtgttagcctcctgatttgtctctagcttcatcagttaaataaacatatcataataatggaagatgtagaattccaataagtttgctattagacatattgtgattctgaaagtcccaccatttctcctttagtagtacacacctggctatcactcagaatttcatctatgagtcacgttgaaagttttaagaaaagccttaagattcaattgttaagaatttcagttattgtctaaaggttggggagatgaaaaatactaagttggctcatacatttaaaaataaattatctatcaaaacctg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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