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2024-03-28 21:59:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001007077            1838 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus PRAME like 25 (Pramel25), transcript variant 1, mRNA.
ACCESSION   NM_001007077 XM_110518
VERSION     NM_001007077.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Tang F, Barbacioru C, Nordman E, Bao S, Lee C, Wang X, Tuch BB,
            Heard E, Lao K and Surani MA.
  TITLE     Deterministic and stochastic allele specific gene expression in
            single mouse blastomeres
  JOURNAL   PLoS One 6 (6), e21208 (2011)
   PUBMED   21731673
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF174133.1, CA559385.1, BC084594.1, AK135972.1 and BB285244.1.
            
            On Apr 25, 2009 this sequence version replaced NM_001007077.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK135972.1, BC084594.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               CF174133.1         9-188
            181-611             CA559385.1         151-581
            612-1365            BC084594.1         593-1346
            1366-1828           AK135972.1         1349-1811
            1829-1838           BB285244.1         262-271
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 77.96 cM"
     gene            1..1838
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /note="PRAME like 25"
                     /db_xref="GeneID:194227"
                     /db_xref="MGI:MGI:3650478"
     exon            1..98
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..1565
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="oogenesin-like isoform 1"
                     /protein_id="NP_001007078.2"
                     /db_xref="CCDS:CCDS18894.1"
                     /db_xref="GeneID:194227"
                     /db_xref="MGI:MGI:3650478"
                     /translation="
MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA"
     exon            99..409
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     exon            410..985
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1838
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atagcagggagaggaagtatagattaggtctcttggagcctggagtcacagctttcccttgcctgaatatggtgatctgtggccattgtccagatcaggatgagtctttagaagaagtcacagaggaatgctattccccacccaccctccagaatctggcaattcagagtctactgagggatgaggccttggccatttctgctctcacggacctgccccagagtctgttcccagtaatttttgaggaggccttcactgatggacatatagggatcttgaaggccatgatacctgaatggcccttcccatacctttctttaggaaagcagataaataattgcaacctggagactttgaaggctatccttgagggactagatatactgcttgcacaaaaggttcaaaccagtaggtgcaaactcagagtaattaattggagagatcatgacttgaacttatgggctggatcccatgaaggtgaaggcttatcagaattcactacagagaagcagccaattgagaacagtcctggctgtgaggtgaagaaagaattgaaggtgatgactgaagtccttcgcatgaagggcagacttgatgaatctaccacatacttgttgcagtgggcccagcagagaacagattctattaatttattctgcagaaagctagtaattgaaggcttaaccaaagcctcagtgatagaaatcttcaaaactgtacacgcagactgtatacaggagcttatcctaagacgtatctgcatagaagagttggcttttcttaatccctacctgaaactgatgaaaagacttttcacactcacactagatcacatcataggtaccttcagttttggtgattctgaaaagcttgatgaggagataatattcagcttgatttctcaacttcccacactccactgtctccagaaactctatgtaaatgatgtcccttttataaaaggcaacctgaaagaatacctcaggtgcctgaaaaagcccttggagacactttgcatcagtaactgtgacctctcacagtcagacttggattacctgccctattgcctgaatatttgtgaactcaaacatctgcatcttagtgatatatgtctacgtgatttactccttgagcctcttgggtttctccttgagagagttggagataccctgaaaatcctggaattggagtcatgttgtatagtggactttcagttcagtgccttgctgcctgccctaagccaatgttctcacctcagagaggtcactttctatgataataatttctctctgcctttcttgaaacaacttctacaccacacagccctgctgagtcagctgatcagtgagtgttaccctgcccctctggagtgctatgatgacagtggtgtaatactaacacacagattagaaagtttttgtcctgagctcctggatatactcaaagccaaaagacagctccaaagtgtctcctttgaaacaacccaatgctctaaatgtggtgggtgctacatttatgaccaggagacccaatgttgtcattttgtggaactactattagcttgattgcgaaaccgagaaatggaaacttagtattggggactgatgaaatcctaagtaaacgtccactgctaaatggagcatgaaaatgtcaatcacctaaaagtctgagatacataggaaagtcaataccttcctcagagctggtgaatggatgttgcatctgcagaaagtatcaagcacttgtagtttgtgtgtgttacaatagaggcaccattttatgaaactggcccaatctgttttctgtgtacaataaatgtgttgactttctgagttgca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]