2024-05-03 06:26:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001007077 1838 bp mRNA linear ROD 04-AUG-2023 DEFINITION Mus musculus PRAME like 25 (Pramel25), transcript variant 1, mRNA. ACCESSION NM_001007077 XM_110518 VERSION NM_001007077.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1838) AUTHORS Tang F, Barbacioru C, Nordman E, Bao S, Lee C, Wang X, Tuch BB, Heard E, Lao K and Surani MA. TITLE Deterministic and stochastic allele specific gene expression in single mouse blastomeres JOURNAL PLoS One 6 (6), e21208 (2011) PUBMED 21731673 REFERENCE 2 (bases 1 to 1838) AUTHORS Piao Y, Ko NT, Lim MK and Ko MS. TITLE Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method JOURNAL Genome Res 11 (9), 1553-1558 (2001) PUBMED 11544199 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CF174133.1, CA559385.1, BC084594.1, AK135972.1 and BB285244.1. On Apr 25, 2009 this sequence version replaced NM_001007077.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). ##Evidence-Data-START## Transcript exon combination :: AK135972.1, BC084594.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-180 CF174133.1 9-188 181-611 CA559385.1 151-581 612-1365 BC084594.1 593-1346 1366-1828 AK135972.1 1349-1811 1829-1838 BB285244.1 262-271 FEATURES Location/Qualifiers source 1..1838 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="4" /map="4 77.96 cM" gene 1..1838 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /note="PRAME like 25" /db_xref="GeneID:194227" /db_xref="MGI:MGI:3650478" exon 1..98 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /inference="alignment:Splign:2.1.0" CDS 69..1565 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="oogenesin-like isoform 1" /protein_id="NP_001007078.2" /db_xref="CCDS:CCDS18894.1" /db_xref="GeneID:194227" /db_xref="MGI:MGI:3650478" /translation="
MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA"
exon 99..409 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /inference="alignment:Splign:2.1.0" exon 410..985 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /inference="alignment:Splign:2.1.0" exon 986..1838 /gene="Pramel25" /gene_synonym="Gm13023; MGC:91194" /inference="alignment:Splign:2.1.0" ORIGIN
atagcagggagaggaagtatagattaggtctcttggagcctggagtcacagctttcccttgcctgaatatggtgatctgtggccattgtccagatcaggatgagtctttagaagaagtcacagaggaatgctattccccacccaccctccagaatctggcaattcagagtctactgagggatgaggccttggccatttctgctctcacggacctgccccagagtctgttcccagtaatttttgaggaggccttcactgatggacatatagggatcttgaaggccatgatacctgaatggcccttcccatacctttctttaggaaagcagataaataattgcaacctggagactttgaaggctatccttgagggactagatatactgcttgcacaaaaggttcaaaccagtaggtgcaaactcagagtaattaattggagagatcatgacttgaacttatgggctggatcccatgaaggtgaaggcttatcagaattcactacagagaagcagccaattgagaacagtcctggctgtgaggtgaagaaagaattgaaggtgatgactgaagtccttcgcatgaagggcagacttgatgaatctaccacatacttgttgcagtgggcccagcagagaacagattctattaatttattctgcagaaagctagtaattgaaggcttaaccaaagcctcagtgatagaaatcttcaaaactgtacacgcagactgtatacaggagcttatcctaagacgtatctgcatagaagagttggcttttcttaatccctacctgaaactgatgaaaagacttttcacactcacactagatcacatcataggtaccttcagttttggtgattctgaaaagcttgatgaggagataatattcagcttgatttctcaacttcccacactccactgtctccagaaactctatgtaaatgatgtcccttttataaaaggcaacctgaaagaatacctcaggtgcctgaaaaagcccttggagacactttgcatcagtaactgtgacctctcacagtcagacttggattacctgccctattgcctgaatatttgtgaactcaaacatctgcatcttagtgatatatgtctacgtgatttactccttgagcctcttgggtttctccttgagagagttggagataccctgaaaatcctggaattggagtcatgttgtatagtggactttcagttcagtgccttgctgcctgccctaagccaatgttctcacctcagagaggtcactttctatgataataatttctctctgcctttcttgaaacaacttctacaccacacagccctgctgagtcagctgatcagtgagtgttaccctgcccctctggagtgctatgatgacagtggtgtaatactaacacacagattagaaagtttttgtcctgagctcctggatatactcaaagccaaaagacagctccaaagtgtctcctttgaaacaacccaatgctctaaatgtggtgggtgctacatttatgaccaggagacccaatgttgtcattttgtggaactactattagcttgattgcgaaaccgagaaatggaaacttagtattggggactgatgaaatcctaagtaaacgtccactgctaaatggagcatgaaaatgtcaatcacctaaaagtctgagatacataggaaagtcaataccttcctcagagctggtgaatggatgttgcatctgcagaaagtatcaagcacttgtagtttgtgtgtgttacaatagaggcaccattttatgaaactggcccaatctgttttctgtgtacaataaatgtgttgactttctgagttgca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]