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2024-04-16 13:39:52, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Mus musculus DnaJ heat shock protein family (Hsp40) member B4 (Dnajb4), transcript variant X1, mRNA. (3779 bp)
gcgtgtgtgtgtgtgtgtgtgtgtgtacgcgcgcgtgtgtgtctgtgtgtgctcgtgtctgtgtgtgtatctttaaatgatcagtgtgataggctcctttaataaaaattaaaattcttaagtgtatatgtaatatgtggagaataaaagccaaagtcatacagaaatgcagtctaggtgacattcagagatgctgtgttgggctggtaccagaatgcattgatgtgtgtgctttaccgttgtgacttctcaatattctgcagcgtttcttaagagcatggttgtaatgttcgtaaagcagacctcatcataagaagaaaatgaatgacattttctctcctgtggaagtcccaatagccagagctcctgatattttagaaacagatggtttttaagtggccacatgtaattttatgcagttgactatatatcttaaacttaataagctcattttgtggttcattagtttaaggtatttgtttactaacatgtttttagagaaaatactgttacttggcattaattgtccatttacagtgttctgttaagttcctcatgctatgcaccttacataatttccctaaagaacagtcatctatc...
position 3208
Synonym: 1700029A20Rik; 2010306G19Rik; 5730460G06Rik
XM_036163237.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus DnaJ heat shock protein family (Hsp40) member B4 (Dnajb4), transcript variant 4, mRNA. (4619 bp)
gcgtgtgtgtgtgtgtgtgtgtgtgtacgcgcgcgtgtgtgtctgtgtgtgctcgtgtctgtgtgtgtatctttaaatgatcagtgtgataggctcctttaataaaaattaaaattcttaagtgtatatgtaatatgtggagaataaaagccaaagtcatacagaaatgcagtctaggtgacattcagagatgctgtgttgggctggtaccagaatgcattgatgtgtgtgctttaccgttgtgacttctcaatattctgcagcgtttcttaagagcatggttgtaatgttcgtaaagcagacctcatcataagaagaaaatgaatgacattttctctcctgtggaagtcccaatagccagagctcctgatattttagaaacagatggtttttaagtggccacatgtaattttatgcagttgactatatatcttaaacttaataagctcattttgtggttcattagtttaaggtatttgtttactaacatgtttttagagaaaatactgttacttggcattaattgtccatttacagtgttctgttaagttcctcatgctatgcaccttacataatttccctaaagaacagtcatctatc...
position 1646
Synonym: 1700029A20Rik; 2010306G19Rik; 5730460G06Rik
NM_001356364.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus DnaJ heat shock protein family (Hsp40) member B4 (Dnajb4), transcript variant 2, mRNA. (4839 bp)
gcgtgtgtgtgtgtgtgtgtgtgtgtacgcgcgcgtgtgtgtctgtgtgtgctcgtgtctgtgtgtgtatctttaaatgatcagtgtgataggctcctttaataaaaattaaaattcttaagtgtatatgtaatatgtggagaataaaagccaaagtcatacagaaatgcagtctaggtgacattcagagatgctgtgttgggctggtaccagaatgcattgatgtgtgtgctttaccgttgtgacttctcaatattctgcagcgtttcttaagagcatggttgtaatgttcgtaaagcagacctcatcataagaagaaaatgaatgacattttctctcctgtggaagtcccaatagccagagctcctgatattttagaaacagatggtttttaagtggccacatgtaattttatgcagttgactatatatcttaaacttaataagctcattttgtggttcattagtttaaggtatttgtttactaacatgtttttagagaaaatactgttacttggcattaattgtccatttacagtgttctgttaagttcctcatgctatgcaccttacataatttccctaaagaacagtcatctatc...
position 1866
Synonym: 1700029A20Rik; 2010306G19Rik; 5730460G06Rik
NM_025926.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus DnaJ heat shock protein family (Hsp40) member B4 (Dnajb4), transcript variant 1, mRNA. (4861 bp)
gcgtgtgtgtgtgtgtgtgtgtgtgtacgcgcgcgtgtgtgtctgtgtgtgctcgtgtctgtgtgtgtatctttaaatgatcagtgtgataggctcctttaataaaaattaaaattcttaagtgtatatgtaatatgtggagaataaaagccaaagtcatacagaaatgcagtctaggtgacattcagagatgctgtgttgggctggtaccagaatgcattgatgtgtgtgctttaccgttgtgacttctcaatattctgcagcgtttcttaagagcatggttgtaatgttcgtaaagcagacctcatcataagaagaaaatgaatgacattttctctcctgtggaagtcccaatagccagagctcctgatattttagaaacagatggtttttaagtggccacatgtaattttatgcagttgactatatatcttaaacttaataagctcattttgtggttcattagtttaaggtatttgtttactaacatgtttttagagaaaatactgttacttggcattaattgtccatttacagtgttctgttaagttcctcatgctatgcaccttacataatttccctaaagaacagtcatctatc...
position 1888
Synonym: 1700029A20Rik; 2010306G19Rik; 5730460G06Rik
NM_027287.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus DnaJ heat shock protein family (Hsp40) member B4 (Dnajb4), transcript variant 3, mRNA. (4907 bp)
gcgtgtgtgtgtgtgtgtgtgtgtgtacgcgcgcgtgtgtgtctgtgtgtgctcgtgtctgtgtgtgtatctttaaatgatcagtgtgataggctcctttaataaaaattaaaattcttaagtgtatatgtaatatgtggagaataaaagccaaagtcatacagaaatgcagtctaggtgacattcagagatgctgtgttgggctggtaccagaatgcattgatgtgtgtgctttaccgttgtgacttctcaatattctgcagcgtttcttaagagcatggttgtaatgttcgtaaagcagacctcatcataagaagaaaatgaatgacattttctctcctgtggaagtcccaatagccagagctcctgatattttagaaacagatggtttttaagtggccacatgtaattttatgcagttgactatatatcttaaacttaataagctcattttgtggttcattagtttaaggtatttgtttactaacatgtttttagagaaaatactgttacttggcattaattgtccatttacagtgttctgttaagttcctcatgctatgcaccttacataatttccctaaagaacagtcatctatc...
position 1934
Synonym: 1700029A20Rik; 2010306G19Rik; 5730460G06Rik
NM_001356363.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/mm/seq%3aGTTCGTAAAGCAGACCTCATCATAA
lang : en | div : | spe : mm | query_string : seq:GTTCGTAAAGCAGACCTCATCATAA | format : html | download : 

0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GTTCGTAAAGCAGACCTCATCATAA)?source=Mus musculus (house mouse)?to=0&format=json
0.102 | 0.015 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GTTCGTAAAGCAGACCTCATCATAA)?source=Mus musculus (house mouse)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.103 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]