GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-04-21 05:00:02, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XR_002837545            4423 bp    RNA     linear   VRT 03-FEB-2018
DEFINITION  PREDICTED: Paramormyrops kingsleyae testis and ovary specific PAZ
            domain containing 1 (topaz1), transcript variant X9, misc_RNA.
ACCESSION   XR_002837545
VERSION     XR_002837545.1
DBLINK      BioProject: PRJNA432421
KEYWORDS    RefSeq.
SOURCE      Paramormyrops kingsleyae
  ORGANISM  Paramormyrops kingsleyae
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala;
            Osteoglossomorpha; Osteoglossiformes; Mormyridae; Paramormyrops.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019716010.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Paramormyrops kingsleyae Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4423
                     /organism="Paramormyrops kingsleyae"
                     /mol_type="transcribed RNA"
                     /isolate="PKING1"
                     /db_xref="taxon:1676925"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="Fin Clip"
                     /dev_stage="adult"
                     /ecotype="Bambomo Creek, P0-Absent"
                     /geo_loc_name="Gabon: Bambomo Creek"
                     /lat_lon="2.16341666 S 11.46185 E"
                     /collection_date="Jul-2009"
                     /collected_by="Jason Gallant"
     gene            1..4423
                     /gene="topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:111840932"
     misc_RNA        1..4423
                     /gene="topaz1"
                     /product="testis and ovary specific PAZ domain containing
                     1, transcript variant X9"
                     /db_xref="GeneID:111840932"
ORIGIN      
gggaggagtggttgagtctgtctgggatactgggcagtttgtgaggctagaaacaacacgcaccgtgctgcacgtccaggcagcgtttaaaactgaagcgtgtactttactcaatagttatcatttacaaagttcatctgcgtgatactcgcagttgcttcgtcagtgtatagtttgtttactgttagttaatcaagatatacttttgaaagaaatgtccaaactaatttgatatttggtattgcaatgtaagagctagcagtttattcatgttgcatatcgcatatgcaaagaaatgccatattcccgttttactattgtaagtaatgtgttgaaaatgaacaattcccgttttttagtttctggtagttgcgtttttcccctaacagaatagttcatgttgttagtggttgtttgtgccaaattttgattcgcaatttggttttcaatgagaaagcatgaacaaaatgcagttatctggatcgagaagggtaagaattaaccgtactgttcttactaaagagagtagcaacgcatcggtcaagcggaggaggtcgtccttcggtggaaacgttaataatgccgagaacaagctaatccaaggcgacccctgtgcatctcacagaaattcaggtggcgatcagtgctcatcgcaagagaaaatgtcagacaagcccaatttaagacgcctgtgcacgtccaggtatgctcacgtatctaacacgtgtgttgtgcaacttataccgctggattccaagtctttgagtggatcatctccaaaacacatggacgtaagtttgcggagcactggtgaaggaggaccaggaacagctggaagaggaggtggatgcatatcagaaactgaagggaatgaaaccgttcagaagcaatccaccttgtgcttgagagattgttctatcaagaagcaggaaaaaaggcttattaaaagtccgtcctgtttcacgtgctgtgatgtgaagtttgccccctccaggtatgacagtctggccgtagtcaggtcatgtgacagcagggctaaagaaaccaccaaaaaacaaacctcaagaaagctggacagaaggacaggaaggaatcctgttgttaaactctgtaacatttcaaacattttcagtatccctgctgattttttgcattcgaggtgcatgttgccagaggaactaaaacgaaaaagcatccactgctttaagagagactgcagtgaaggtatgttactggagttctatccagcatcgcgtacgagtggtagggttaaccaaccccagccggggttacaagctgagacaaagtccactcttacatcccaagcccaaagacctaatgatgtagcagatatcctcacaaggactccttcaggagggaggtgtgacagacatgttttctgtgttgacacggaccctaatgctcatggataccgaatgacaaaccgaatgagagcgtccaacggatttagtcctctgatttccctgcccactgatgttctagagtctcatggcatggttccagtcatccagtccacaactgtatcatccagttgtgaaccaggagccctgcgtgagcctggtctaccctctggtgcagagatgatcaagagaagtgcaccaggtacaccaccgaatcggcaagatgcacatgaggaaagcagtctgttgatagcaggtggtggtcttgctatacggactatgcatgatcggtctgcggaatgcaaccgggataccagttgggaaggggaaggagaacttgactgggacatgactgagactttctcttgccaaagaacgaccccataccgaggatcactgtcctgtgcgcgtacatatatctcatggccttttcagaagttgcaaggatctggaaggggattcacagacaccagcactctacccctgatgcacgcaaaagccgaaagcgctcctgtgactgacgttcctgccaagttcagagctcctgactttgctaaagctgtggaatcggtaacagcagaaggcccagctagtggtacagaagtctgcatggaacctgaaatgctttctgaaatgaaattgggtctccgagaggacggttctgaatccgtaaagttagatgaaatggcagccaaaccggccctgccagttatttccttacaaacagaaccccagggcagttctggaggctgtggtcaccggtctaacaccctggattacaaggagcagaaaaatggaatctgtgagcccgagaaggttacaggtggacatttctgggagatgagtgtcacacagaaggtgaagctccagtgtttcaagatccctctgaagatggacacagaccaacctcagttccatccttctaaacagtctggtggtgtcgtcacaccatgcagagcggcagctggcaccaaagcactttcctctagcccaacatgtacaggaagacctcctggcgtgaagtcaaggccccttgcttcaccagagcgaagccggacttcaccgcttaaggttcctgctggctgcgatagtgatggcaacaccagcctgctctctgaagatgaggccggggactgcgtgcacccattggacggcgtcatcatgtgtgagataaaggactcttgcagcgctccgtaccgacagcctccttccctgggatccaactccagagtggagggggggacagaagatgcaatggacgtggtcaaagcatatgagcaggacgccatcgtcctggatgtgattcaggatgacccagaattgtttggcacaataacagaggaactcgtgtttggacagcagaagaaaccagagagaccactgcatgctaagaaaggtcaccacggaaacactgcaagaacctggaggagaataatctgggataagaaggagagctttaccgaaggcccagatccaacccagaagtacacagataagggagccttcatgcttgatataaacggagaaactaacagtgagacagtggtaagtgatggccaaccctctaacaccatggctggtgatgagcgccacctgctggcagaagagagcaaagcgggccccaccgatgatggagcaggcgaatggttatggacggatttcatgaccagtttccaggaagagcagtcgaagatgcatccggaaacctttgctcagcgagccgtgaattgcaccgcacagggggcccccggcggcggcttctcagtgaactgtgccgagagagagacctccaccactagggggagcactcccaacacagcaggtccagtaagtggtcctcctgatcgtgacgtttactgcaagtattacttcagcagcaagcacatgtgcttcaggaaggtctgctggttcctgcatgtgcctctagatggcgatgagcagttctgcactgaagtcatgattaggttcagcagagatgcaaatcagtccctcttacagcgtgcagctgctgtgtttgttagttactaccagaaatgtccacctgggatccattttgacctgcaagctttgaaacttctcctgtcggccctgttcaaacacggcatcatcaaagacgtgctctctgtcctgcgggttctcacgtcatacagaattctgccaccgtcggagttcatactggcgttgtttgatcacgtgagtcagtgttgcctccgtgtcgcgaccgcagacctcatggatgtcacgtccatggcaatgtgtggacgccggtctgcccttcacgcccgccgacttccagcacatgcagcgctgcctggagctgctcggcctgccggcgccgcagatgaacggcttcctggccttcaagctccggggcctggggacagacgcatggaaagtcagtggggaggtgcagctggccatagcagaggtggagcgctgcagggagcagggggattggaccaggatgggcaccgtcttctccagcctgtgtgcatcccagcacagcctggcagagctgcgacagctgagcggccgcgtggccctggctctgctcaaggactcggccgccgccccgctgcccttcgcccagttcgcgcaggccgtctgccagggcagctctgccaacggccttatcaacactctgattggccgaatcggggtttccttgatgttccggtactacggtgcgaagcagtggctgaagggcaggcagctgctggacaccctgaaggacttgaacattaactactccatgctgaatagcctgtttggcagcgagagcggcgcgtcccagggccgcacggtcagcgtggccgtcgagctcctcctgaacagcggcagcatggagagcgctctccagctgctcaaagataacgactggttgagcggctcctccccgcggccttgtgatgccaacacgacgcagatccgccaggccgtactgtgccagctggccgacagctgcgtacagaagggcgtccaccgggtggcgctagaggtgt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]