LOCUS       XM_064566651            1745 bp    mRNA    linear   VRT 25-APR-2024
DEFINITION  PREDICTED: Latimeria chalumnae vimentin-related 2 (VIMR2), mRNA.
ACCESSION   XM_064566651
VERSION     XM_064566651.1
DBLINK      BioProject: PRJNA1100969
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Latimeria chalumnae (coelacanth)
  ORGANISM  Latimeria chalumnae
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Coelacanthiformes; Coelacanthidae; Latimeria.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088153) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_037176945.1-RS_2024_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/18/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Latimeria chalumnae"
                     /mol_type="mRNA"
                     /isolate="fLatCha1"
                     /db_xref="taxon:7897"
                     /chromosome="15"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Comoros: Grande Comore Island, Africa"
                     /lat_lon="11.583333 S 43.333333 E"
                     /collection_date="2003"
                     /collected_by="Ahamada Said"
     gene            1..1745
                     /gene="VIMR2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon."
                     /db_xref="GeneID:102349890"
     CDS             1..1107
                     /gene="VIMR2"
                     /codon_start=1
                     /product="low molecular weight neuronal intermediate
                     filament"
                     /protein_id="XP_064422721.1"
                     /db_xref="GeneID:102349890"
                     /translation="

MCSARVSSYRRIFHEDLGSLHPVVSYDWGGRHRVAARSDCIVDEVEDDEISFRTALSRDYLVRCLKNRGLMARLNNRLVNFIENVRCLEEENEVLEAEIELMRESVQRYCHLSSQQRQDLWELSAVVEKLEREKEETWAEIGALHQELCARKLKHEQLSELRSLVEEETDKLIPEIDLLTGECLGLKKEAEILEDQLDHMQQEHEMQVGELLSPEEEESVVLSLDFTSPDMVPAVLDIQEHYQDLASCLKLSGRVSRAIQGGTEDAEDTKENLKLMITDLEKELAYLIMRNEQLETEIQENEMANEDEIICLEDELAELKQWISTLKSEMAEKVKDYRQLLSAKMALDLEIAAYRSFIEEEDERLYHP"

     polyA_site      1745
                     /gene="VIMR2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atgtgcagcgcccgagtttcatcctaccggcggatcttccacgaggacctgggttctcttcaccctgtggtcagttacgactggggtggacggcatcgtgttgcagccaggtcagactgtatcgttgatgaagtcgaagatgatgaaataagtttccgaactgctttgagtcgagactatctggtgagatgtctgaagaaccggggtctgatggcaagactcaataatcggctggtgaactttatagaaaatgttcgttgcttggaagaagagaatgaagttctggaagctgaaattgagttaatgcgggagagcgtgcagagatactgccacctgtcatcacagcaaagacaggacctctgggagctcagtgcagtggtggagaagctggaaagggagaaggaggagacctgggcagagattggtgccctgcatcaggaactgtgcgctcgcaagctgaaacacgagcagctctccgaactgcggagtctagtggaggaggaaacggacaaactcataccagagattgatcttctcacaggagagtgtctgggcctcaagaaggaggctgagatcctggaggaccagttggatcacatgcagcaggaacatgagatgcaagttggagagctgctgtctcctgaagaagaggagtctgttgttttgagtttggatttcacgtctcctgacatggttcctgcagtcctagacattcaggaacactaccaggatctggctagctgtctgaagctgtctggaagagtctctagagccatacagggaggaacagaagacgctgaagatacaaaagagaacctcaagctaatgattactgacttggaaaaggagctggcgtacctaataatgagaaatgaacagctggagactgaaatccaggagaacgaaatggccaatgaagacgagatcatctgcctagaggatgaacttgctgagctgaagcaatggataagcactctgaaaagtgagatggcagaaaaggtgaaggactataggcaacttctgagtgccaaaatggcgctggacttggaaatagcagcttacaggagctttattgaagaagaggatgaaaggctataccatccttaaactggcaaacttctgctctttaaaaccaaaaaaaaagaaaaagaagagatttctggtaggaatgctgtgtaaaagaaacatgcatgtctatgaggaatatgccactatttgatgtgctttgctctgatgttccgccatgtacattattacctctatttcaaagaaaaaacttattactgcatccttcacctgtgtcagtcaatcattggcagtgaaagaaggagcgataatttgtgtttcctctgaaaatgctaactatagctcgagtgaaaccatcaggattgtcacatcaaatgctgttgtagtccccaaagacagttgtgctttcaaatactgaaaagacaacttgactatatttttggcaagacatttatggcactgctgggtttttctactcttgcagctgaagcataggaatgacttttccagtttaccccctcctcttctaaaccttaacagcagtgtgttcttctggacttttgaatattctatgtttgtcagcaataacgaaccctaagattaatctttcattcaggaatctgtgtcactgcattagtactggtgctttatacttacaatggaacaattcaaaaaagaaaacccagtgatactggtaataaatccatgcaataatgaga

//