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2025-04-21 05:27:18, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       NM_001328878            2820 bp    mRNA    linear   PLN 13-JAN-2025
DEFINITION  Malus domestica protein argonaute 4-like (LOC103427265), mRNA.
ACCESSION   NM_001328878
VERSION     NM_001328878.1
KEYWORDS    RefSeq.
SOURCE      Malus domestica (apple)
  ORGANISM  Malus domestica
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae;
            Maleae; Malus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KU167607.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KU167607.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA8717349,
                                           SAMEA9239656 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Malus domestica"
                     /mol_type="mRNA"
                     /db_xref="taxon:3750"
                     /chromosome="03"
                     /map="03"
     gene            1..2820
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /note="protein argonaute 4-like"
                     /db_xref="GeneID:103427265"
     CDS             1..2820
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /codon_start=1
                     /product="protein argonaute 4-like"
                     /protein_id="NP_001315807.1"
                     /db_xref="GeneID:103427265"
                     /translation="
MDSIEPDGNATNGVNGANGANVVNGANGVNGANGAEDALPPPPPVIPPDVVPLHVEADNIPEPVKKKPARVPIARRGLGTKGTKIPLVTNHFKVNVTNIEGYFFHYSVSVAYEDGRPLDGKGAGRRIIERVHETYHSELGGKDFAYDGEKSLFTVGSLPRNKLEFAVVLEDVPSSRNNGNCEPDGPGSPNESDRKRLRRPNRSKTFNVEISYAAKIPMKAIGDALRGQESENSQEALRVLDIILRQHASKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQSVRDPFQLDWTKAKRTLKNLRVKTSPSNQEFKITGLSEKPCREQTFTLRNKQAKEGEDAEIEVTVYDYFVNHRNIQLRYSADLPCLNVGKPKRPTYIPLELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMSVLSNALKINNYDAEPMLHSCGVSIGGSFTQVEGRVLPAPKLKVGNGDDFFPRNGRWNFNNKTLVKPTKIEKWAVVNFSARCDLKALVRDLIKCGDMKGIKIEAPFDVFEENPQSRRAPPLVRVERMFEDIQSKLPGQPQFLLCLLPERKNSALYGPWKRKNLAEYGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAVEYSPSIPVVSKAPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLYKRVSDTEDDGIMRELLLDFYTSSGKQKPDQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDETWSPKFVVIIAQKNHHTKFFQPQSPDNVPPGTIIDNKICHPRNNDFYLCAQAGMIGTTRPTHYHVLLDDVGFSADELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMSQFMKFEDASETSSSHGGLTSAGAVPVPQLPRLKENVSSSMFFC"
     misc_feature    181..2817
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     exon            1..321
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            322..527
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            528..752
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            753..889
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            890..987
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1085
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1251
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            1252..1368
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1476
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            1477..1539
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            1540..1653
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1819
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            1820..1932
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            1933..2070
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            2071..2201
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            2202..2267
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            2268..2331
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            2332..2443
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            2444..2517
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            2518..2612
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            2613..2644
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
     exon            2645..2820
                     /gene="LOC103427265"
                     /gene_synonym="AGO4.1; argonaute"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atggattcgattgagccagatggaaatgcaacaaatggggtgaatggagctaatggggcaaatgtagtgaatggagcaaatggggtgaatggagctaatggggcagaggatgcgttgccacccccacccccagttattccaccagatgttgttcctttgcatgtggaagcagataacattcctgaacctgttaagaaaaaacctgctcgggtccctattgctaggcgtggccttggaaccaagggaacaaaaatacccttggtcacaaatcacttcaaagtgaatgttactaatattgagggttacttcttccattatagtgtttctgtcgcttatgaagatgggcgtccgcttgacggcaagggtgctggaagaagaataattgaaagggtgcatgagacataccactcggagttaggtggaaaggactttgcctatgatggggagaagagcctgtttactgttggatcccttccgcgcaacaaacttgaattcgccgttgttttggaggatgtgccatcaagcaggaacaatggaaactgtgaacctgatggtcctgggagtccaaatgagagtgaccgaaagagattacggcgtccaaatcgctccaaaacatttaatgtggagatcagctatgctgcaaaaattcccatgaaagcaattggagatgctcttcgtggtcaagaatcagagaattctcaagaagctttgagagtcctggatatcatattaagacagcatgcatcgaagcaaggatgcctcctagttcgccaatcattcttccataatgatccaaaaaattttgcggatgttggaggtggtgttcttgggtgcagaggattccattcaagttttaggaccacccagggtggcttgtctctgaacattgatgtatcgactaccatgatcatacagccagggccggtggtagactttttaattgccaaccaaagtgttagagatcctttccaacttgactggacgaaggctaaaagaacactcaagaatttgagggtcaaaacaagtccgtcaaatcaagagttcaaaataactggattgagcgagaagccatgccgagaacagacttttacattgagaaacaagcaagcaaaggaaggggaagatgcagaaatagaagtgactgtttatgattattttgttaatcatcgtaatatacagctgcggtactcggctgatctaccctgccttaatgttgggaaaccaaaacgtcctacttatatccccttggagctttgttctttggtgtccttgcaacgttacacaaaagctctttccacccttcaaagagcttcgctggtggagaaatcaaggcagaagccacaagagaggatgagtgttttgtctaatgctttgaaaatcaataattatgatgctgaaccaatgctccactcatgtggtgtttcaattggtggtagctttactcaagtggaaggccgtgttcttccagccccaaagcttaaagttggtaatggtgatgatttcttccctcgaaatgggcgctggaatttcaacaacaagacacttgtcaagccaactaagatagaaaagtgggctgttgttaacttctctgcacgctgtgatctaaaagccctcgtccgtgatctgatcaaatgtggagatatgaaaggaattaaaatcgaggctccatttgatgtgtttgaagagaatcctcagtctaggcgcgccccacctttggttagagttgagaggatgtttgaggatatacagtccaaacttcctggacaaccacagtttcttctctgtttgcttccggagagaaaaaattctgctttatatggtccatggaagcggaagaatctggctgagtatggtattgtgacacaatgcattgctcccacaagggtcaatgatcaataccttacaaatgtcctgttaaagatcaatgcaaagcttggtgggttaaattcattgttggcagttgaatattctccttctatccctgtggtttccaaggctcccactatcatccttgggatggatgtgtcccatggttctcctgggcaatctgatgtaccctcaattgctgcggtggtaagctccaggcagtggccactgatttctcgctacagggcatctgttcgaacacaatcccccaaggtggagatgatagactctctgtacaaacgagtttctgacacagaggatgatggcattatgagagagctgcttctggacttctatacaagttcaggcaaacagaaacctgaccagattatcatcttcagggatggagtaagcgaatctcaatttaaccaagttttgaacattgaactggatcaaatcatagaggcttgcaagttcctggatgagacttggtcccctaaatttgtggtgatcattgctcagaagaaccaccacacaaaattttttcagcctcaatccccagataatgttcctcctggaacaattattgacaacaaaatttgtcacccaagaaacaatgacttctatctatgtgctcaagctggaatgattgggaccacgaggcctactcactatcatgttctgttagatgatgttggtttttcagccgatgagctgcaggaactagtgcattcactttcatacgtgtaccagagaagtaccaccgccatttccgtagttgcccccatttgctatgcacatttagctgccactcagatgtcacagttcatgaaattcgaagacgcgtctgagacatcttcaagccatggcggtcttacctctgctggagctgttcctgtcccgcagctgccgaggttgaaggagaatgtgtccagttccatgtttttctgttga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]