LOCUS       XM_031904841            3362 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis PBX/knotted 1 homeobox 2 (pknox2),
            transcript variant X3, mRNA.
ACCESSION   XM_031904841
VERSION     XM_031904841.1
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030683.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3362
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..3362
                     /gene="pknox2"
                     /gene_synonym="prep2"
                     /note="PBX/knotted 1 homeobox 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 34 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100151724"
                     /db_xref="Xenbase:XB-GENE-853128"
     CDS             204..1523
                     /gene="pknox2"
                     /gene_synonym="prep2"
                     /codon_start=1
                     /product="homeobox protein PKNOX2 isoform X2"
                     /protein_id="XP_031760701.1"
                     /db_xref="GeneID:100151724"
                     /db_xref="Xenbase:XB-GENE-853128"
                     /translation="

MTATAQQTAKPQPVHLPAASAAANPVPGAPIDPQAQLEADKRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEHKPFFSEDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSNSLHTQDMLQNSPNSMTGLSNNPQGIVVPASALQQGNISMTTVNSSQVVSGGALYQPVAMVTSQGQVVTQAIPQGAIQIQNAQVNLELTSLLDSEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQQQGGLPGTNPDGSVNMENLQSLSSDSLTMQQAMMAAHDDSLDGTEEEEDEEEMEEDELEDDSEELQTTNVSDLGLDHSDSLE"

     misc_feature    399..656
                     /gene="pknox2"
                     /gene_synonym="prep2"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(981..995,999..1001,1059..1061,1077..1079,1116..1118,
                     1122..1127,1134..1139,1143..1151)
                     /gene="pknox2"
                     /gene_synonym="prep2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(987..989,996..998,1125..1127,1134..1139,1146..1148)
                     /gene="pknox2"
                     /gene_synonym="prep2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1035..1151
                     /gene="pknox2"
                     /gene_synonym="prep2"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

tcctagacaatcacactagtttcttgggcctgagacatacaataatatgagtaagaatgcaattcttcaactcagcacaatgatttttttcaagaaaactcaatgctaactcgaaattcaccaaacattgataatggggattgcctctggagagaaagcttgtttattgcagattgaagctggagtcaccacatcagaggacaatgacagccacggcgcaacagactgccaagccccaaccagtgcacctcccagcagcctctgcagcagcaaacccagtccctggtgcaccaattgaccctcaggcacagctagaagctgacaagcgggctgtctacagacatccgcttttcccacttttgacactactgtttgagaagtgcgaacaggccacccagggctctgagtgtataacatctgccagttttgatgtggatattgagaactttgttcaccaacaggaacaagaacacaaaccatttttcagtgaggaccctgaactcgacaacctaatggtaaaggctatccaggttctacgtatccacctactagagctggagaaggtcaacgagttgtgtaaggacttttgcaaccgatatatcacatgcctaaaaaccaaaatgcacagtgataatttgctcaggaatgatttaggtggaccatattccccaaaccagccctccaacagcctacatacgcaggacatgttacagaactctccaaactctatgactggtctatccaataacccacaagggattgttgtccctgcttcagcattgcagcaaggaaatatctctatgacaacagtcaactcctctcaagttgtatcaggtggggctctttatcagccagttgccatggtaacttcccagggtcaggtagtaacccaagctatcccacagggagccatacagatccagaatgcacaggttaacctggaactgacctccctgcttgacagtgaagataaaaagtctaagaacaagcgtggagtcctgccaaagcatgctactaacattatgcgctcttggcttttccaacatctgatgcacccttacccaacagaggatgagaagcggcaaatagcagcacagacaaacctgacactgttgcaagtcaacaactggtttatcaatgcaagacggcgcattctccagccaatgttagatgccagcaatcctgaccctgcaccaaaagctaagaagattaagtcccagcatcggccaactcaaagattctggcccaactctattgcagcaggtgttctgcaacagcaaggagggttacctggcactaatcctgatggttctgtcaatatggaaaacctgcagtcactctcatctgactccctcacgatgcagcaggccatgatggcagctcatgatgactcactggatggtacagaggaggaagaggatgaagaagaaatggaggaggatgaactggaagatgacagtgaggaacttcagacgacaaatgttagtgaccttggtttggatcacagtgactccctggagtaaaactttgatcaggtggagaaaaagggtggttaaaggcacactttgcattgatctaaagctcaaatagccttggaatatctttaaatagcccactcctaccttctaatcaatcatggaacagactctccagttatctgttgctcaaatgtaacagcctgcacctctttttaagtggaagacaacacatctgccagcacacaaggtggaatagaacctgccaaactaggacaaagtctaatccactgtaagaagaactgttgaattctttcttttccctaacccagaggatttgaaaagctggaactcccttgtaaaatgcgatccttgtagaccattctggaaacagaacaaaaaaaatgcaaatatccattactttcatagttgcctgcttgtatcattgtttcatggcagggactttacaatattatggacaaagcaattgtgcagtctttttatttaaacaaaggacacatgtttacagagccacatattgtggttactttgttttgtttgtcttttaaagaacttaacgtgtttttaggcaaagctttttctgtattattactgaaagctatttgaatgttaaagtttatatactgtatgtgtgtgcgtgtgtatatatctatacacacatacacacacacatacatgcacagaatataaatacacagctggagagtgctgtatggatattctgatatttgtacaacacgacgctccatccctatatactgtacatgaaatacacacacacactactttcaggaggctggtactaaaatcattgaccattttgagaactaagtttgtgtgtaaaattacaaaactgcatccctcgacctttcaaatgatgtaatatcagactcatctattttggcaagtatacggttttatgaaatttccatataaacagagtatgaaaatgaagaaagtacttgaatgtgtgcatgtgttatcacgaagatatctttgttctggctcctaatcattattctgcattaacagtgcacatacttttagcttctctatatctttgataagttgtggttataaattttaatgttttagggttaagtggggttgtttgtctatgcaatgtttactggtctttaactgaccccagagtcaaaatgcacacatcaaactccctctcaaacatgaaaccacttaaggcacaaaatgtaagcaatgatggtgctggacaccaaacttaaaaaggcacagcattaatctgggtgtagattaaagaataactatagaaaatgcccagtcttgctgcaaatcttgaggtttatgtagcagggagaatatattggttatcccaactggcttccacatgttttgtgtaacagaatcctgcttctgtgacttttctgtaatagggatatacattctgtgaatgacactgaatgtgtgtctcagctttgttacagggttcttattgagaaattgaatgaaataaaccacagtggttagattctacacttctatccatgtattgtaatatttcagttcagccatttatgaaaagactgggagaagatgaattaaattgaaatcatgaatatcctaatcatgaatatgaccatggattacagaattggcacacaatgcctgatgtttgttctgagtagaaacattgtttgttagttttgcagaaatgtttaaatgctgggctcaaaactgcattgtttcatatcaacaagccatggagtgctcatagccaatcaacacctgtcttctggttgtgatggaacaatgatcagactcccttgcataaatcctgaagtggacatatattccatatatataataataaaagaatcttttgttaaatta

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