LOCUS       NM_001100200            2295 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis visual system homeobox 1 (vsx1), mRNA.
ACCESSION   NM_001100200
VERSION     NM_001100200.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   D'Autilia S, Decembrini S, Casarosa S, He RQ, Barsacchi G, Cremisi
            F and Andreazzoli M.
  TITLE     Cloning and developmental expression of the Xenopus homeobox gene
            Xvsx1
  JOURNAL   Dev. Genes Evol. 216 (12), 829-834 (2006)
   PUBMED   17103185
  REMARK    GeneRIF: Xvsx1 was cloned and its developmental expression studied.
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC135613.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC135613.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="5"
                     /map="5"
     gene            1..2295
                     /gene="vsx1"
                     /gene_synonym="ktcn; ppcd; ppd; rinx; Xvsx1"
                     /note="visual system homeobox 1"
                     /db_xref="GeneID:100101658"
                     /db_xref="Xenbase:XB-GENE-853166"
     misc_feature    39..41
                     /gene="vsx1"
                     /gene_synonym="ktcn; ppcd; ppd; rinx; Xvsx1"
                     /note="upstream in-frame stop codon"
     CDS             45..1079
                     /gene="vsx1"
                     /gene_synonym="ktcn; ppcd; ppd; rinx; Xvsx1"
                     /codon_start=1
                     /product="visual system homeobox 1"
                     /protein_id="NP_001093670.1"
                     /db_xref="GeneID:100101658"
                     /db_xref="Xenbase:XB-GENE-853166"
                     /translation="

MTGRDDISEAKSKGKILAPSAGNEKSGRFHGPAMRSKGFAITDLLGLEAELQPPSLSLPSCEGPGASLGGVSLANGSLPLGLGFLCGFASQQPPGTTCLLPTHIPFLQPRADHQYLHASDKHKENISDDDSLLGDKNDLKASSSQAKRKKRRHRTVFTAHQLEELEKAFNEAHYPDVYAREMLALKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESIINSAKNGLVGSCAPWLLGMHKKSVDITRTVDPEDMAIERSKGKSHVDDFTNRHSEFHRSPRQQSNSMDISEERAIDLSSTAKQENQSRVRRNSLRDSQSDLTDSEH"

     misc_feature    495..665
                     /gene="vsx1"
                     /gene_synonym="ktcn; ppcd; ppd; rinx; Xvsx1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

cctagaagcagcaaaggagaaagtaaacttacaattactgagacatgaccgggcgagatgacatctcagaagcaaaatcaaaggggaagatcctggcacccagtgcgggaaatgagaaatcggggaggttccatggacctgcaatgagatccaaaggctttgccatcactgacctgcttggtctggaagcagagttgcagcccccatcattatctctgcccagctgtgaaggtccaggagccagtctaggtggggtatccctggctaatggctctctcccacttggactgggctttctgtgtggctttgcatctcagcagccccctgggactacatgccttctcccaactcacatcccttttctacagcctagagcagaccaccagtatctacatgcttcagacaagcacaaggaaaacatctcagatgatgacagcctcctgggggataagaatgacttgaaggcatccagctcccaggcaaaaagaaagaaaagaagacacaggactgtatttactgctcatcagctggaggaattagaaaaagctttcaatgaagctcattatccggatgtgtatgccagagaaatgttagcactaaagacagagcttcccgaagatagaatacaggtctggtttcagaacagaagagctaaatggaggaagcgtgaaaagtgctgggggcgaagcagcgttatggccgaatatggtctgtatggagccatggtgagacactccattccactacctgaatccattatcaactcagccaagaatggactcgtgggttcctgtgctccgtggcttctcgggatgcacaaaaagtctgttgacatcaccaggacagtggaccccgaggacatggcaatagagcgttccaagggaaaatcccatgttgatgatttcacaaacagacatagtgaattccacagaagcccacggcaacagagcaactcaatggacatttcagaagagagagccattgatctctcaagcaccgcaaaacaagagaaccagtctagagtgcggcgcaactcccttagagacagtcagagcgaccttactgacagtgagcactgaacagtacttgggtcagatgccatgaccagaagatggtaatgagaaaagagggctgtagaatggcaagatctgctccattgatgataaaacagcaaacaatcatggacactaattattgtagaaatattttgatattaccagattttttttttttttaaagagatttttattgaaaacgttttttcaggtcagagaacaatttattggtgttcgatataaatgtctggggttttaattagttgaaatataaaagcaatagcatattaaaggcaatctttagttaagggtgctgtacatgtttcagtatatttgtaggaatggaggacaactgtctgtaaatagcggcaaaggggacataggtcagaaagggcattcttgttagataggagcaatgcaagaacacaacatgttgtaggattaaaagtctctgcttaatggtacctcccttccacatttatgtatgcagttgcactaggactcccagcatataatgttctgcaacataatgttccctttgtgctttagtttctactctactctgacccatttcaatgtatcttccttatatttttcagtgacaggtaaaaggggatgttttctatgtatcacacgtgtctgtagagctctatacactctctgctgctttgaacttgctataaattgcagttcagttatgtctggctatcacaaggagtaaaagtcttcctatacaaaatctttcttttttttttttttttaaatggaataagcgccaggccttccagagaaaatatgtagcataggcatgttatactgatacattcattccctctcgtgtttttattttggttttgcattaagccccagcttagataacagatgatataggtactgtgactttaagaggatgccgtttgcaaatgttacctacagtatataggatatacaccctctactgttccatctcagctgttcatagaaatcattgctcccttttctaaaaaaaaaaaatatatatatagtgtaaataattaatagccgatgtttttgtaattatcttaatggtttgtaaaatatattgtaataatgttgggctcttttcacagcccttttgcgtttctgtcttgaacaagcactttggtaactgggatatactgagatattgtttggtatatttgatcctatatttatgatgtatagagcaataaaccttttacatgtgaaaaaaaaaaaaaaa

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