GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2026-06-22 14:25:43, GGRNA : RefSeq release 233 (Jan, 2026)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Limanda limanda SH3 domain-containing kinase-binding protein 1 (si:dkey-71d15.2), transcript variant X2, mRNA. (1188 bp)
; Region: COG2433" /db_xref="CDD:441980" ORIGIN // aagacactgaggagtttgcctctattgcgtctgcggcggagaagctgaacgagcagatagctggtgcagatgagaggttacagtcagagcttcagactctgggaagtatacattcttaataatatagttagaatcacattattcacttgaatactattgtaactcagctcataaatacaaagagtttgtggtctggtctgtttgtgtcccatctctccttgaggtaaatttaacttctcggagctgcctctgacacacacacacacacacaagaacacatagcagaggattctcaccctgtatttaatattaatttgactttacactagaataaattgtttctgacctaaaggccatttttaagaatttctttgggaagcaccaaactctgggatatttgttttatatatttagagtagacaaagcactttagatgtatcagacgtctcaaactagactcaatttacaggcaacactcatgacaatgatggaggagaaaagaaaagaaaaccagag...
position 204
XM_061086538.1 - Limanda limanda (common dab) - NCBI
PREDICTED: Limanda limanda SH3 domain-containing kinase-binding protein 1 (si:dkey-71d15.2), transcript variant X1, mRNA. (1371 bp)
caagatgtagatttaaagtctctgcaggtctttctgtctttcactacacttgtattcctcatgggcagctacagctcagccctgattcctgacactgaggagtttgcctctattgcgtctgcggcggagaagctgaacgagcagatagctggtgcagatgagaggttacagtcagagcttcagactctgggaagtatacattcttaataatatagttagaatcacattattcacttgaatactattgtaactcagctcataaatacaaagagtttgtggtctggtctgtttgtgtcccatctctccttgaggtaaatttaacttctcggagctgcctctgacacacacacacacacacaagaacacatagcagaggattctcaccctgtatttaatattaatttgactttacactagaataaattgtttctgacctaaaggccatttttaagaatttctttgggaagcaccaaactctgggatatttgttttatatatttagagtagacaaagcactttagatgtatcagacgtctcaaactagactcaatttacaggcaacactcatgacaatgatggaggagaaaagaaaagaaaacc...
position 387
XM_061086537.1 - Limanda limanda (common dab) - NCBI
PREDICTED: Aegilops tauschii subsp. strangulata uncharacterized lncRNA (LOC120973294), ncRNA. (4918 bp)
tctccctcacccctccttctccacctccagccgctgccacggccaggccggcgtggcggtgcgtcacccagccatctatccactccatctccaccacgacatctccaccacccaccgctgccagcaccgcatcaccaccaccatccgctgcatcttccttagccacgccacaccaccagcgactctctctcaacgcaccttgctgctactcttcttcacttgcctcaaactgctgctgctctcttctccccggcgcctccacactgctgctactactcctttcctttgctggtgtcccatctctccttgcactcctgctgcttcttcttcccaaaccttgatgctgccgctctcttctccccaaaactactgctgcttgttctctcctgcgcccccttgcagaacctctgctctaaacctcctccttctgctcctccttgtgtgtgtgtgtgtgtaattcataaaaaacatattgttgtgttcagtgaacaattagtgttgagacttgttcaattgcaaactgttttgtgctagatttatatgtgactatcagttcgtgggttgtataaattcagattactacctgtgattttattttgt...
position 4483
XR_012202535.1 - Aegilops tauschii subsp. strangulata - NCBI
PREDICTED: Pseudopipra pipra lymphocyte activating 3 (LAG3), transcript variant X2, mRNA. (6062 bp)
tgtctcccatccctctttgctcttgagaaaacccagtgcagccctgggatatttggaaggctattgcatactttttgattgtattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcaaaaatatcacttaacgaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgttaaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattggggtttttgttatgttttgggggttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttgtttctgactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcacagta...
position 305
XM_064644646.1 - Pseudopipra pipra - NCBI
PREDICTED: Pseudopipra pipra lymphocyte activating 3 (LAG3), transcript variant X1, mRNA. (6452 bp)
tgtctcccatccctctttgctcttgagaaaacccagtgcagccctgggatatttggaaggctattgcatactttttgattgtattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcaaaaatatcacttaacgaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgttaaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattggggtttttgttatgttttgggggttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttgtttctgactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcacagta...
position 305
XM_064644645.1 - Pseudopipra pipra - NCBI
PREDICTED: Manacus candei lymphocyte activating 3 (LAG3), transcript variant X3, mRNA. (8022 bp)
tgtctcccatccctctttgctcttgagaaaacccagtgcagccctgggatatttggaaggctattgcatattttttgattggattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcaaaaatatgacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagataccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattgggggttttgttatgttttggggtttttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttgtttcggactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcactg...
position 2286
XM_051780803.1 - Manacus candei (White-collared manakin) - NCBI
PREDICTED: Lepidothrix coronata lymphocyte activating 3 (LAG3), transcript variant X2, mRNA. (9091 bp)
tgcctcccatcccactttgctcttgggaaaacccagtgcagccctgggatatttggaaggctattgcatattttttgattggattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcagaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtaactgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattgggggttttgttatgttttgggttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttatttctcactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcactgtaaa...
position 3361
XM_017814885.1 - Lepidothrix coronata (blue-crowned manakin) - NCBI
PREDICTED: Manacus candei lymphocyte activating 3 (LAG3), transcript variant X1, mRNA. (8418 bp)
tgtctcccatccctctttgctcttgagaaaacccagtgcagccctgggatatttggaaggctattgcatattttttgattggattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcaaaaatatgacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagataccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattgggggttttgttatgttttggggtttttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttgtttcggactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcactg...
position 2286
XM_051780801.1 - Manacus candei (White-collared manakin) - NCBI
PREDICTED: Lepidothrix coronata lymphocyte activating 3 (LAG3), transcript variant X3, mRNA. (9593 bp)
tgcctcccatcccactttgctcttgggaaaacccagtgcagccctgggatatttggaaggctattgcatattttttgattggattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcagaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtaactgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattgggggttttgttatgttttgggttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttatttctcactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcactgtaaa...
position 3361
XM_017814886.1 - Lepidothrix coronata (blue-crowned manakin) - NCBI
PREDICTED: Chiroxiphia lanceolata lymphocyte activating 3 (LAG3), transcript variant X3, mRNA. (10029 bp)
tgtctcccatccctctttgctcttgaggaaacccagtgcagccctgggatgtttgggaggctattgcatattttttgattgtattagaagcttgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacacagaggttgtggcatcaaaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttctgaaagagaatagttacacagtcctccacagcaaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattggggtttttgttatgttttgggaggggtttttagcagaaatgcagcccacaactttactcagatccccccaatgttgtttctgactttctaattcagagctgagtattgtcatacaaagagtactcaccttctagcactgtaaagaaagagactgcaga...
position 4309
XM_032678526.1 - Chiroxiphia lanceolata (lance-tailed manakin) - NCBI
PREDICTED: Chiroxiphia lanceolata lymphocyte activating 3 (LAG3), transcript variant X4, mRNA. (10326 bp)
tgtctcccatccctctttgctcttgaggaaacccagtgcagccctgggatgtttgggaggctattgcatattttttgattgtattagaagcttgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacacagaggttgtggcatcaaaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttctgaaagagaatagttacacagtcctccacagcaaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattggggtttttgttatgttttgggaggggtttttagcagaaatgcagcccacaactttactcagatccccccaatgttgtttctgactttctaattcagagctgagtattgtcatacaaagagtactcaccttctagcactgtaaagaaagagactgcaga...
position 4309
XM_032678527.1 - Chiroxiphia lanceolata (lance-tailed manakin) - NCBI
PREDICTED: Chiroxiphia lanceolata lymphocyte activating 3 (LAG3), transcript variant X5, mRNA. (10527 bp)
tgtctcccatccctctttgctcttgaggaaacccagtgcagccctgggatgtttgggaggctattgcatattttttgattgtattagaagcttgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacacagaggttgtggcatcaaaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttctgaaagagaatagttacacagtcctccacagcaaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattggggtttttgttatgttttgggaggggtttttagcagaaatgcagcccacaactttactcagatccccccaatgttgtttctgactttctaattcagagctgagtattgtcatacaaagagtactcaccttctagcactgtaaagaaagagactgcaga...
position 4309
XM_032678528.1 - Chiroxiphia lanceolata (lance-tailed manakin) - NCBI
PREDICTED: Corapipo altera lymphocyte activating 3 (LAG3), transcript variant X2, mRNA. (10794 bp)
tgtctcccatccctctttgctcttgagaaaactcagtgcagccctgggttgtttgggaggctattgcgtattttttgattggaatagaagcatggacactgcaatgaaaagggagttgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacacggaggttgtggcatcaaaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattccgtaagtgtcccatctctccttgaggacgaatctggaggtcttttgaaagagaatagttacacagtcctccccggcaaatgctggccagttataagatgccagatgccaaatatgcccaagaatgctgcagattttcttcagtgattaaatcattggagtttttgttatgttttttggggggggaggttagcagaaatgcagcccacaactttagtcagatccctccaatgttgtttttgactttctaattcaggtttctctgggatacgcaactgagtattgtcacacaaaaggtactcaccttctagcactg...
position 5041
XM_027653675.1 - Corapipo altera (White-ruffed manakin) - NCBI
PREDICTED: Corapipo altera lymphocyte activating 3 (LAG3), transcript variant X1, mRNA. (11186 bp)
tgtctcccatccctctttgctcttgagaaaactcagtgcagccctgggttgtttgggaggctattgcgtattttttgattggaatagaagcatggacactgcaatgaaaagggagttgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacacggaggttgtggcatcaaaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgatgaccaataaggattccgtaagtgtcccatctctccttgaggacgaatctggaggtcttttgaaagagaatagttacacagtcctccccggcaaatgctggccagttataagatgccagatgccaaatatgcccaagaatgctgcagattttcttcagtgattaaatcattggagtttttgttatgttttttggggggggaggttagcagaaatgcagcccacaactttagtcagatccctccaatgttgtttttgactttctaattcaggtttctctgggatacgcaactgagtattgtcacacaaaaggtactcaccttctagcactg...
position 5041
XM_027653674.1 - Corapipo altera (White-ruffed manakin) - NCBI

Data Export:

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Debug Info:

Redirect URI : https://172.18.8.233:20082/en/seq%3agtgtcccatctctccttg
lang : en | div : | spe : | query_string : seq:gtgtcccatctctccttg | format : html | download : 

0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:gtgtcccatctctccttg)?to=0&format=json
0.098 | 0.020 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:gtgtcccatctctccttg)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.100 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]