2024-11-01 07:58:53, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001047852 3230 bp mRNA linear ROD 03-APR-2024 DEFINITION Rattus norvegicus BCL2-associated transcription factor 1 (Bclaf1), mRNA. ACCESSION NM_001047852 XM_001055723 XM_001073455 XM_214967 VERSION NM_001047852.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3230) AUTHORS Orieux,G., Picault,L., Slembrouck,A., Roger,J.E., Guillonneau,X., Sahel,J.A., Saule,S., McPherson,J.P. and Goureau,O. TITLE Involvement of Bcl-2-associated transcription factor 1 in the differentiation of early-born retinal cells JOURNAL J Neurosci 34 (4), 1530-1541 (2014) PUBMED 24453340 REMARK GeneRIF: Bclaf1 facilitates the differentiation of early retinal precursors into retinal ganglion cells, amacrine cells, and horizontal cells rather than into cone photoreceptors. REFERENCE 2 (bases 1 to 3230) AUTHORS Horiuchi,K., Kawamura,T., Iwanari,H., Ohashi,R., Naito,M., Kodama,T. and Hamakubo,T. TITLE Identification of Wilms' tumor 1-associating protein complex and its role in alternative splicing and the cell cycle JOURNAL J Biol Chem 288 (46), 33292-33302 (2013) PUBMED 24100041 REFERENCE 3 (bases 1 to 3230) AUTHORS Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A., Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K., Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and Landthaler,M. TITLE The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts JOURNAL Mol Cell 46 (5), 674-690 (2012) PUBMED 22681889 REFERENCE 4 (bases 1 to 3230) AUTHORS Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M., Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M., Krijgsveld,J. and Hentze,M.W. TITLE Insights into RNA biology from an atlas of mammalian mRNA-binding proteins JOURNAL Cell 149 (6), 1393-1406 (2012) PUBMED 22658674 REFERENCE 5 (bases 1 to 3230) AUTHORS Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L., Parisi,S. and Russo,T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 6 (bases 1 to 3230) AUTHORS Liu,H., Lu,Z.G., Miki,Y. and Yoshida,K. TITLE Protein kinase C delta induces transcription of the TP53 tumor suppressor gene by controlling death-promoting factor Btf in the apoptotic response to DNA damage JOURNAL Mol Cell Biol 27 (24), 8480-8491 (2007) PUBMED 17938203 REFERENCE 7 (bases 1 to 3230) AUTHORS Kasof,G.M., Goyal,L. and White,E. TITLE Btf, a novel death-promoting transcriptional repressor that interacts with Bcl-2-related proteins JOURNAL Mol Cell Biol 19 (6), 4390-4404 (1999) PUBMED 10330179 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC161968.1. On Aug 28, 2008 this sequence version replaced NM_001047852.1. ##Evidence-Data-START## Transcript exon combination :: BC161968.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3230 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="1" /map="1p12" gene 1..3230 /gene="Bclaf1" /gene_synonym="Aa2-041" /note="BCL2-associated transcription factor 1" /db_xref="GeneID:293017" /db_xref="RGD:1309704" exon 1..119 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 120..223 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" misc_feature 213..215 /gene="Bclaf1" /gene_synonym="Aa2-041" /note="upstream in-frame stop codon" exon 224..337 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" CDS 234..2999 /gene="Bclaf1" /gene_synonym="Aa2-041" /codon_start=1 /product="bcl-2-associated transcription factor 1" /protein_id="NP_001041317.2" /db_xref="GeneID:293017" /db_xref="RGD:1309704" /translation="
MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRIYSRDYRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNGSSRYSPSQNSPIHHIPSRRSPAKTITPQNAPREDSRGRSSFYPDGGGDQETAKTGKFLKRFTDEESRVFLLDRGNTRDKEAPKEKGSEKGRTDGDWDDQEVLDYFSDKESAKQKFHDSEGDDTEETEDYRQFRKSVLADQGKSFATSSHRNTEEEGPKYKSKVSLKGSRESDGFREEKNYKLKETAYIVERPSTTKDKHKDEDKGSDRITVKKEVQSPEQVKSEKLKELFDYSPPLHKSLDAREKSIFREESPLRIKMIASDSHRPEVKLKMAPVPLDDSNRPASLTKDRLLASTLVHSVKKEQEFRSIFDHIKLPQASKSTSESFIQHIVSLVHHVKEQYFKSPAVTLNERFTSYQKATEEHSTRQKSPEIHRRIDISPSALRKHTRLAGDERVFKEEIQKGDKKLRCDSADLRHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKPYRDDSKHKGREQDHSRSSSSSASPSSPSSREEKESKKEREDEFKSHHEMKDYSGFAGVSRPRGTFFRIRGRGRARGVFAGTNPGPNNSNSTFQKRPKEEEWDPEYTPKSKKYFLHDDRDDGVDYWAKRGRGRGTFQRGRGRFNFKKSGSSPKWTHDKYQGDGIVEDEEETMENNEEKKDRRKEEKE"
misc_feature 702..2462 /gene="Bclaf1" /gene_synonym="Aa2-041" /note="THRAP3/BCLAF1 family; Region: THRAP3_BCLAF1; pfam15440" /db_xref="CDD:464718" misc_feature <2715..>2912 /gene="Bclaf1" /gene_synonym="Aa2-041" /note="CASC3/Barentsz eIF4AIII binding; Region: Btz; cl09653" /db_xref="CDD:447763" exon 338..1249 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 1250..1915 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 1916..2085 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 2086..2191 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 2192..2276 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 2277..2452 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 2453..2633 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 2634..2780 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 2781..2993 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" exon 2994..3207 /gene="Bclaf1" /gene_synonym="Aa2-041" /inference="alignment:Splign:2.1.0" ORIGIN
gagccgagctagcgcgacgaggccacctctatggtcttcctctccttctggagtcgggaaatggccgctgtgtagttacagcggaggtaaatcctgagaatcgtgcttcggcgtgtcaggaatttgaatttagagtttaatttcctataacattctctacaagaagaatcttggcagtatcttaaagacatcactgacttctggatcctgtataaagcccaaggagaaaagaaatgggccgctccaattctagatcacattcttcaagatccaagtctagatcacagtctagttctagatcaagatcaagatcacattctagaaagaagagatacagttctaggtctcgttccagaacatattcaaggtctcgtagtagagatcgtatttattctagagattatcgtcgggattacaggaataatagaggaatgagacgaccttatgggtacagaggaaggggtagagggtattatcaaggaggaggaggtagatatcaccgaggtggctatagacctgtttggaatagaaggcactctaggagtcctaggcgaggtcggtcacggtccaggagcccgaaaagaagatctgtgtcttctcaaagatcccgaagcagatctcgccggtcatacagatcctctaggtctccaagatcatcatcatctcgttcttcatccccttatagcaaatctcctgtctctaaaagacgagggtctcaggaaaaacagaccaaaaaagctgaaggggaaccccaagaagagagtcctttgaaaagcaaatcacaggaggaaccaaaggatacttttgaacatgatccatctgaatctattgatgagtttaataaatctgctacatctggtgatatttggcctggcctttcagcttatgataatagtccaaggtcacctcatagtccttcacctattgctaccccacccagtcagagttcatcatgctcagatgcccccatgcttagtacagtccactctgccaaaaataccccctctcagcactcacattccattcagcacagtcctgagaggtctggatccggttctgttgggaatgggtctagtcgatatagtccttctcagaatagtccgattcatcacatcccatcacgaagaagccctgcaaagacaatcacaccacagaatgctccaagagaggactctagggggcggtcctctttttatcctgacggaggaggagatcaggaaacagcaaagacaggaaagtttttgaaaaggtttacagatgaagagtctagagtattcctgcttgataggggtaataccagggataaagaggccccaaaggagaaagggtccgagaaaggcaggacagacggagattgggacgatcaggaggttctagattactttagtgataaagagtctgcaaaacaaaagttccatgattctgaaggggatgacacagaggagacagaggattatagacagtttaggaagtcagtcctggcagatcaggggaagagctttgctacttcatctcaccggaatactgaggaggaaggacccaagtacaagtccaaagtttcactaaaaggcagtagagaaagtgatggatttagagaagaaaaaaattataaactgaaagagactgcatacatagtggaaaggcctagcactacaaaggacaagcacaaggacgaagacaaaggctctgacagaataacagtgaagaaagaagtgcagtcaccggagcaggtaaagtctgaaaagctcaaagagctctttgattacagtccccctctacacaagagtctggacgcacgagaaaagtccatcttcagagaggagagcccgctgaggatcaaaatgatagccagtgattctcaccgtcctgaagtcaaactcaaaatggcccctgttcctctggatgactccaacagacctgcctccttgactaaagacaggctacttgctagcacgcttgtccattctgtcaagaaagaacaagaattccgatccatctttgaccacattaagttgcctcaggccagcaaaagcacttcagagtcatttatacaacacattgtatccttggttcatcacgtgaaagagcaatacttcaaatcacctgcagtgaccctaaacgagcggttcacttcataccagaaagctactgaagagcatagtacccggcaaaagagccctgagatacacaggaggattgacatctctccaagcgctctgaggaagcatacccgtttagcaggagacgagagagtttttaaagaagaaattcaaaagggagataaaaaattaaggtgtgattcggctgatcttcggcatgacattgaccgtcgccgcaaagaaagaagtaaagagcggggagattccaagggttcgagggaatctagtggatcaagaaagcaagagaaaacaccaaaggattacaaggagtacaaaccttacagagatgacagcaaacataaagggagagagcaagatcattctcggtcatcgtcctcttcagcatcgccttcgtcacccagctcccgagaagagaaagagagtaagaaagaaagagaagacgagtttaaatctcaccatgagatgaaagactactcaggatttgcaggagttagcaggccacgaggaaccttttttcggatcagaggcagaggaagagcccgaggcgtttttgctgggacaaaccctggtccaaacaactcaaactccactttccaaaagagaccgaaggaagaggagtgggatccagagtataccccaaagagcaagaagtacttcttgcacgatgacagagatgatggtgtggattattgggccaaaagaggaagaggtcgtggtacttttcaacgcggcagagggcgctttaatttcaaaaaatcaggtagcagtccaaaatggactcatgacaaataccaaggagatgggattgttgaggatgaagaggagaccatggaaaataatgaagagaagaaggataggcgcaaagaagaaaaggaatagtctcaagattgcatcagggagcagaacttgacacttaatttttttaaacctgatttttgttttcaaataagaatgtaagcattttacttaaaatgtactgtttgcaagtagtctatagaaattttgttttaagtcttcaaatatcttgaaaatagtagactgtatgttgaaaattgtactgaaataaagtagaagacgttcaatatcaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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