2024-05-04 22:23:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006252271 5169 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus piwi-like RNA-mediated gene silencing 2 (Piwil2), transcript variant X1, mRNA. ACCESSION XM_006252271 VERSION XM_006252271.4 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051350.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_006252271.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5169 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="15" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..5169 /gene="Piwil2" /note="piwi-like RNA-mediated gene silencing 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:306011" /db_xref="RGD:1306964" CDS 51..3068 /gene="Piwil2" /codon_start=1 /product="piwi-like protein 2 isoform X1" /protein_id="XP_006252333.2" /db_xref="GeneID:306011" /db_xref="RGD:1306964" /translation="
MRWCSAWAGCFRALTTRGQVTNWNRTNSHFYCLSMDPVRPLFRGPTPVHPSQCVRMPGCWPQAPRPLEPAWGRAGPAGRGLVFRKPEESSPPLQPVQKESVGLVSMFRGMGLDTALRAPSKREVPPLGRGVLGRGLSANVVRKDREESRSSLPDPSVLAAGDSKLAEASVGWSRMLGRGSSDVSLLPLGRAAGSIGRGVDKPPSAFGLTARDPPRLPQPPTLSPTSLHSSDPPPVLTIERKEKELLVKQGSKGTPQSLGLNLIKIQCHNEAVYQYHVTFSPNVECKSMRFGMLKDHQSVTGNVTAFDGSILYLPVKLQQLVELKSQRKTDDAEISIKIQLTKILEPCSDLCIPFYNVVFRRVMKLLDMKLVGRNFYDPTSAMVLQQHRLQIWPGYAASIRRTDGGLFLLADVSHKVIRNDSVLDVMHAIYQQNKEHFQDECSKLLVGSIVITRYNNRTYRIDDVDWNKTPKDSFVMSDGKEITFLEYYSKNYGITVKEDDQPLLIHRPSERQNNHGTLLKGEILLLPELSFMTGIPEKMKKDFRAMKDLTQQINLSPKQHHSALECLLQRISQNETANNELTRWGLSLQKDVHKIEGRLLPMERINLRNTSFVTSEDLNWVKEVTRDASILTIPMHFWALFYPKRAMDQARELVNMLEKIAGPIGMRISPPAWVELKDDRIETYIRTIQSLLGVEGKIQMVVCIIMGTRDDLYGAIKKLCCVQSPVPSQVINVRTIGQPTRLRSVAQKILLQMNCKLGGELWGVDIPLKQLMVIGMDVYHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKYYEVNHCLPEKIVVYRDGVSDGQLKTVANYEIPQLQKCFEAFDNYHPKMVVFVVQKKISTNLYLAAPDHFVTPSPGTVVDHTITSCEWVDFYLLAHHVRQGCGIPTHYICVLNTANLSPDHMQRLTFKLCHMYWNWPGTIRVPAPCKYAHKLAFLSGQILHHEPAIQLCENLFFL"
misc_feature 1161..1304 /gene="Piwil2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1305..1658 /gene="Piwil2" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1437..1439,1476..1478,1500..1502,1512..1514, 1566..1568,1617..1619,1623..1625) /gene="Piwil2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239211" misc_feature 1680..3014 /gene="Piwil2" /note="PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related...; Region: Piwi_piwi-like_Euk; cd04658" /db_xref="CDD:240016" misc_feature order(2187..2189,2199..2201,2235..2246,2253..2255, 2283..2285,2292..2294,2304..2306,2316..2318) /gene="Piwil2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240016" misc_feature order(2379..2381,2385..2387,2589..2591,2988..2990) /gene="Piwil2" /note="active site" /db_xref="CDD:240016" ORIGIN
ggcgatccggaaatcaggacttagggcacgtggttcattccaagtggcggatgaggtggtgttctgcatgggcagggtgcttcagagccctgacgactcgaggccaggtaacgaattggaacagaaccaacagtcatttctactgcctctcaatggatcctgtccggccattgttcagggggcctactccagtccacccatctcaatgtgttcggatgccaggctgttggccgcaagctcctagacctttggaaccagcttggggtagggcaggacctgcaggcagaggccttgtgtttagaaagccagaggaatccagcccaccactccagccagtacaaaaggagtctgtgggtttggtgtccatgtttcgtggcatgggtcttgacacagcattgcgggccccttcaaaacgagaagtgcctcctttaggcagaggagttctaggtcgaggcttgtctgctaacgtagtccgcaaggacagagaagaatcccgttcctctttgcctgatccttcggtgctggcagctggggacagcaagctggcagaggcttctgttggatggagtagaatgctgggaagaggtagttctgatgtctctttgttaccactgggaagagcagctggtagtataggcagaggagtggacaaacctcccagtgcctttggccttactgctcgggatccccctcggctgccccagcctccaactctgtctccaacttcactgcactcctctgatcctcctccagtcctgactatagagcgaaaggaaaaagagcttttggtcaagcaaggatcaaaaggaacacctcagtctttaggactgaacctcatcaaaatccagtgtcataacgaagcagtttatcaatatcatgtaactttcagccccaatgtggagtgcaaaagcatgaggtttggcatgttgaaggaccaccaatctgtcactggaaacgttactgcttttgatggctctattctttatcttcctgttaagcttcaacaacttgttgagttaaaaagccagagaaaaactgatgatgccgagatcagcatcaagattcagctgacaaagatcctggagccatgttccgacttgtgcattcccttctacaatgttgtcttccggcgggtaatgaaacttttggatatgaagcttgtggggagaaacttctatgatcctacaagtgccatggtactgcagcaacacagattgcagatctggcctggctatgcagctagtatccggaggacagatgggggtctcttcttgctcgctgatgtctctcataaggtcattcggaatgactctgtactggatgtcatgcatgctatctaccagcagaacaaggagcacttccaggacgagtgcagcaagcttctggtgggcagcattgtcatcacacgctacaacaaccgtacctaccgcattgacgatgtggactggaacaagacccctaaagacagctttgtaatgtcggatgggaaggagatcacattcctggagtactacagtaaaaactatgggatcacagttaaagaagatgaccagccgctgctcatccaccggcccagtgagagacagaataaccatggcacgttgctgaagggtgagatcctgctgctgcctgagctttccttcatgacggggattcctgagaagatgaagaaggacttcagggccatgaaggacttgactcagcagattaacctgagccccaagcagcaccacagtgctttggaatgcctgctgcagagaatttcacaaaatgagacagccaacaacgagctgacccgctgggggctcagtctgcaaaaagatgtccacaagatcgaaggccgtcttctaccaatggagaggattaacttaaggaatacttcatttgtcacatcggaggacctgaactgggttaaggaggtgaccagagatgcttccattctgactattcccatgcatttctgggcactcttttatccaaagagagcaatggaccaagccagagaactggttaacatgttggaaaagattgctggccccattggcatgcgcataagccccccagcctgggttgaactgaaggatgaccgaatagagacctatatcaggaccattcagtccttactgggagttgaggggaagatacaaatggtcgtttgcatcatcatgggcacacgggatgatctctatggggccatcaagaaactgtgctgtgtgcagtccccagtgccctcacaggtcatcaatgtccgaaccattggtcaacccaccaggcttcggagtgtggctcagaaaattttacttcagatgaactgtaaactgggtggtgagctctggggagtagatattccactgaaacaattaatggtgattgggatggatgtgtaccacgaccccagcagaggcatgcgctctgtggttggctttgttgccagcataaatctcacactcaccaaatggtactcgagggtggtgttccagatgccgcatcaggagattgtggacagcctgaagctctgcctggtgggctccttgaaaaagtattatgaggtgaaccactgtctcccagagaagattgtggtgtaccgagatggagtgtctgatggccagctaaagacagttgccaactatgagatccctcagctgcagaagtgctttgaagcctttgataactaccatcccaagatggtggtatttgtagttcagaagaaaatcagcaccaatctgtaccttgctgctcctgaccactttgtgaccccctcccctgggactgtggttgatcataccataaccagctgtgagtgggtggatttctaccttcttgctcatcatgtgcgacagggctgtggcatacctacacactacatctgtgttctgaacactgcaaatctgagccctgatcacatgcagaggctgactttcaaactatgccacatgtactggaattggcctggtaccatccgagttccagctccttgcaagtatgcccacaagctagctttcctgtccggacagattttgcatcatgaaccagccatccagctatgtgagaacctgttcttcctgtaactgggaacttggacaccagctgcaaggagcaactggattccagctcagctcattcttacagaatcaacagaaatggcagtggagttttacgtttgcattttctctttctccatccttgtagaattagatttctgttcttcttttaaccctgatattatagtagagtggtgtggtacatgcctgttactccagcacatgggagactgaagcagaaggatctttagttcaaggccagcctggactacatggaaagttccaagctagccaagattatagagtgagaccctatctcaaaagacaaaaccaaaccactgtccccacaaagcccacaacaaaaccaaagcctggtgtcaaggaagcaagtttctgagtagcagccagcagctgccttgatggagcagagtgatgttagcagtgccgctgctctgccgagcatgggcctacggacatgtccagtccccctaccaaataagtgaaggacataaaaaacagctcccaaggcagcatgagcatcagtttataaaccagagtttatgcctacaagatcatcctatttctgggccagaagtgacatgaatgaagtagtcattgcagatcttaaaggagagagttactatgttcagagagagttagtgtttcagagagagcagctgtttgcatgcatggaagatgtaggaaaaccagtgtaaggcacagtcaggtgagctgacttgacccaggccagtgagtttggccactccttggcctcctgagagtccagctagagctgcttttctggaccttttagtcatttacgaccatcagattgctttcctgcagcctgactgacacattcatgtgcacatacacacttttgatctttgtgactaatgtgaaataaattcagttaggacattcagcagacctaggaacattctggatggagtataggtttttttctgcaaaaatctgtaaatgagattatgcaagagtctcttccagctgtgggctggtgttgcttggaaattttcaaaatcccaaagtttcatgcttcccaaagttggcttggacaaatgtgatgctctcacctgagcctagacatgtaggaagttttcctagcgccagtgggcttctgtatttgggtgaagcactggttttctgcgttttttttttcccttctgtttcagaatcttcaagtttcttcaggcttaatgaaccatcccttgctttactgggttttaaaagctaattttacttaacctcttcaaatttgtgtgtatctatttatgttttggtgtggtggatggatggtaggggactgagcagaaattcagtgtgctaggagagcctcactgggaagtactgaagagccacagggtctgtgggagtcagtgttagcactcaccaagccaggccaggccttgggtttgaaggcaacaccagcaaagcctttagttcagtatagcacccagaggttggcgagggataagtgttggggtcttcaaatacaacccctggtgtttggagtctgtgaccaaggccagactgagacctgaaaggtaaaagccataggattaaacagagcagactgaaaaatgagtctttaggttgaacacattccactttctggatttctctgtgagtattttgagtttgtctttagacgttgctattcctagcactccttttctctttaggtagaacagacacttaaccataatgccagaatgtactttctatacctgatgtccttgccttgtttttcagtttcagggccaggtaattgggccctgtggtgtaaaataaaaacagtgtatgtgtatagttgtgtctgaaagaatatgtttgtttattaagtagcttttccttcaaagaaaagcaaaagttagttattcctttattattgttcatgtcaggggcagcaccattgagagccaagtggtttcaccctgagcaaactgggagacctacatagtaataatgcatttacgtttgtgtatgtgcttgaatagtttgggactttgggggaataagaaccctcactagcttattaatagaaaattctccactaatatattttcaaagagtgctaaaaaaataaatatactatggtaccaccata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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