2024-04-24 13:43:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_053708 1538 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus gastrulation brain homeobox 2 (Gbx2), mRNA. ACCESSION NM_053708 XM_001066354 XM_346072 VERSION NM_053708.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1538) AUTHORS Roeseler DA, Sachdev S, Buckley DM, Joshi T, Wu DK, Xu D, Hannink M and Waters ST. TITLE Elongation factor 1 alpha1 and genes associated with Usher syndromes are downstream targets of GBX2 JOURNAL PLoS One 7 (11), e47366 (2012) PUBMED 23144817 REFERENCE 2 (bases 1 to 1538) AUTHORS Chen L, Chatterjee M and Li JY. TITLE The mouse homeobox gene Gbx2 is required for the development of cholinergic interneurons in the striatum JOURNAL J Neurosci 30 (44), 14824-14834 (2010) PUBMED 21048141 REFERENCE 3 (bases 1 to 1538) AUTHORS Calmont A, Ivins S, Van Bueren KL, Papangeli I, Kyriakopoulou V, Andrews WD, Martin JF, Moon AM, Illingworth EA, Basson MA and Scambler PJ. TITLE Tbx1 controls cardiac neural crest cell migration during arch artery development by regulating Gbx2 expression in the pharyngeal ectoderm JOURNAL Development 136 (18), 3173-3183 (2009) PUBMED 19700621 REFERENCE 4 (bases 1 to 1538) AUTHORS Chen L, Guo Q and Li JY. TITLE Transcription factor Gbx2 acts cell-nonautonomously to regulate the formation of lineage-restriction boundaries of the thalamus JOURNAL Development 136 (8), 1317-1326 (2009) PUBMED 19279136 REFERENCE 5 (bases 1 to 1538) AUTHORS Waters ST and Lewandoski M. TITLE A threshold requirement for Gbx2 levels in hindbrain development JOURNAL Development 133 (10), 1991-2000 (2006) PUBMED 16651541 REFERENCE 6 (bases 1 to 1538) AUTHORS Hevner RF, Miyashita-Lin E and Rubenstein JL. TITLE Cortical and thalamic axon pathfinding defects in Tbr1, Gbx2, and Pax6 mutant mice: evidence that cortical and thalamic axons interact and guide each other JOURNAL J Comp Neurol 447 (1), 8-17 (2002) PUBMED 11967891 REFERENCE 7 (bases 1 to 1538) AUTHORS Ni Z, Lou W, Leman ES and Gao AC. TITLE Inhibition of constitutively activated Stat3 signaling pathway suppresses growth of prostate cancer cells JOURNAL Cancer Res 60 (5), 1225-1228 (2000) PUBMED 10728680 REFERENCE 8 (bases 1 to 1538) AUTHORS Mason I, Chambers D, Shamim H, Walshe J and Irving C. TITLE Regulation and function of FGF8 in patterning of midbrain and anterior hindbrain JOURNAL Biochem Cell Biol 78 (5), 577-584 (2000) PUBMED 11103948 REFERENCE 9 (bases 1 to 1538) AUTHORS Kowenz-Leutz E, Herr P, Niss K and Leutz A. TITLE The homeobox gene GBX2, a target of the myb oncogene, mediates autocrine growth and monocyte differentiation JOURNAL Cell 91 (2), 185-195 (1997) PUBMED 9346236 REFERENCE 10 (bases 1 to 1538) AUTHORS Lin X, Swaroop A, Vaccarino FM, Murtha MT, Haas M, Ji X, Ruddle FH and Leckman JF. TITLE Characterization and sequence analysis of the human homeobox-containing gene GBX2 JOURNAL Genomics 31 (3), 335-342 (1996) PUBMED 8838315 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000215.1. On Feb 10, 2021 this sequence version replaced NM_053708.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments and homology data. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA5760383, SAMEA5760393 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-561 JACYVU010000215.1 23581343-23581903 c 562-1538 JACYVU010000215.1 23579324-23580300 c FEATURES Location/Qualifiers source 1..1538 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="9" /map="9q36" gene 1..1538 /gene="Gbx2" /note="gastrulation brain homeobox 2" /db_xref="GeneID:114500" /db_xref="RGD:621866" exon 1..561 /gene="Gbx2" /inference="alignment:Splign:2.1.0" CDS 39..1085 /gene="Gbx2" /codon_start=1 /product="homeobox protein GBX-2" /protein_id="NP_446160.1" /db_xref="GeneID:114500" /db_xref="RGD:621866" /translation="
MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPPPPPPPPALPQAALQPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSASPQHQEAAAARKFAPQPLPGGGNFDKSEALQADTEDGKAFLAKEGSLLAFSAAEAVQASLVGAVRGQGKDESKVEDDPKGKEESFSLESDVDYSSDDNLPGQTAHKEEDPGHALEETPQSGGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVHVSRFAIRSQHQQLEQARP"
misc_feature order(780..794,798..800,849..851,867..869,906..908, 912..917,924..929,933..941,945..950) /gene="Gbx2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 786..947 /gene="Gbx2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(786..788,795..797,915..917,924..929,936..938) /gene="Gbx2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 562..1538 /gene="Gbx2" /inference="alignment:Splign:2.1.0" ORIGIN
gacttttcgtctctccctggcttctcccgaacgcgtctatgagcgcagcgttcccgccgtcgctgatgatgatgcagcgcccgctggggagtagtaccgccttcagcatagactcgctgatcggcagcccgccgcagcccagtcccggccatttcgtctacaccggctaccccatgtttatgccctaccggccggtggtgctgccgccaccgccgccgccgcctcccgcgctgccccaggcagcgctacagcccgcgctgccgcccgcgcaccctcaccaccagatccccagcttgcccaccggcttctgctccagcctggcgcagggcatggcgctcacctccactctcatggccacgctgcccggcggcttctctgcgtcgccccagcaccaagaggcggccgccgcccgcaagttcgctccgcagccgctgcctggaggcggcaacttcgacaaatccgaggcgctccaagccgatacggaggacggcaaagccttcttggccaaggagggctcgctgctcgccttctctgcggccgaagcggtgcaagcgtcgctcgtcggggctgtccgagggcaagggaaagacgagtcaaaggtggaagatgacccgaagggcaaggaggagagcttctctctggagagcgatgtggattacagctcagatgacaatttgcctggccagactgctcataaggaagaagaccccggccacgcactggaggagaccccgcagagcggcggtgcggcaggtagcaccacgtccacaggcaagaaccggcggcggcggactgcctttaccagcgagcagctgctggagctggagaaggaattccactgcaaaaagtacctctccctgaccgagcgctcacagatcgcccatgccctcaaactcagcgaggtgcaagtaaaaatctggttccagaaccgccgggccaagtggaaacgtgtcaaggcaggcaacgccaattccaagacgggggagccctctcggaaccccaagatcgtagtccccatccctgtccatgtcagcaggttcgctattcgaagtcaacaccagcagctggagcaggcccgaccctgagggcccagccagggtggacaccaccgtggagaggccctaacacttgagggaacccgtgtcagactccactctttaaagcagaactcagaggcacctcccagatgtggacatcccaaacaaaatgagagtatattcattagaccagcttaaagggggctacagccacaccagaagatacactaaatatttattatacaaccctactttgtacatagatctctatatagactggatctcagctgcagtgtttggaaagggataggatcaaacctctccacttacactttccagatgaaacaaaaccaccactgtactgtctccttcagcgaccacttcccatactttcccaaaggtaaacgggagacccaagaacactgcggtttaacctcattttcttgtttgtttctattctggctttttgagttgagtgcagagcagtcggttttttggttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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