2024-04-18 18:17:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_053355 3525 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus inhibitor of nuclear factor kappa B kinase subunit beta (Ikbkb), mRNA. ACCESSION NM_053355 VERSION NM_053355.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3525) AUTHORS Yang J, Li H, Zhang C and Zhou Y. TITLE Indoxyl sulfate reduces Ito,f by activating ROS/MAPK and NF-kappaB signaling pathways JOURNAL JCI Insight 7 (3), e145475 (2022) PUBMED 35132967 REMARK GeneRIF: Indoxyl sulfate reduces Ito,f by activating ROS/MAPK and NF-kappaB signaling pathways. Publication Status: Online-Only REFERENCE 2 (bases 1 to 3525) AUTHORS Lee S, Shin HJ, Noh C, Kim SI, Ko YK, Lee SY, Lim C, Hong B, Yang SY, Kim DW, Lee WH and Kim YH. TITLE IKBKB siRNA-Encapsulated Poly (Lactic-co-Glycolic Acid) Nanoparticles Diminish Neuropathic Pain by Inhibiting Microglial Activation JOURNAL Int J Mol Sci 22 (11), 5657 (2021) PUBMED 34073390 REMARK GeneRIF: IKBKB siRNA-Encapsulated Poly (Lactic-co-Glycolic Acid) Nanoparticles Diminish Neuropathic Pain by Inhibiting Microglial Activation. Publication Status: Online-Only REFERENCE 3 (bases 1 to 3525) AUTHORS Li M, Guo Q, Cai H, Wang H, Ma Z and Zhang X. TITLE miR-218 regulates diabetic nephropathy via targeting IKK-beta and modulating NK-kappaB-mediated inflammation JOURNAL J Cell Physiol 235 (4), 3362-3371 (2020) PUBMED 31549412 REMARK GeneRIF: miR-218 regulates diabetic nephropathy via targeting IKK-beta and modulating NK-kappaB-mediated inflammation. REFERENCE 4 (bases 1 to 3525) AUTHORS Wei SF, Sun JJ, Zhou N, Li XL, Lin Y, Zhang YD, Zhang YR and Wu LY. TITLE Protective effect of RNA interference targeting Ikkbeta on hepatic fibrosis in rats JOURNAL J Cell Biochem 120 (11), 18894-18900 (2019) PUBMED 31297885 REMARK GeneRIF: Protective effect of RNA interference targeting Ikkbeta on hepatic fibrosis in rats. REFERENCE 5 (bases 1 to 3525) AUTHORS Dondelinger Y, Delanghe T, Priem D, Wynosky-Dolfi MA, Sorobetea D, Rojas-Rivera D, Giansanti P, Roelandt R, Gropengiesser J, Ruckdeschel K, Savvides SN, Heck AJR, Vandenabeele P, Brodsky IE and Bertrand MJM. TITLE Serine 25 phosphorylation inhibits RIPK1 kinase-dependent cell death in models of infection and inflammation JOURNAL Nat Commun 10 (1), 1729 (2019) PUBMED 30988283 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 3525) AUTHORS Kupfer R and Scheinman RI. TITLE Measurement of IKK activity in primary rat T cells: rapid activation and inactivation JOURNAL J Immunol Methods 266 (1-2), 155-164 (2002) PUBMED 12133632 REFERENCE 7 (bases 1 to 3525) AUTHORS Pasparakis M, Courtois G, Hafner M, Schmidt-Supprian M, Nenci A, Toksoy A, Krampert M, Goebeler M, Gillitzer R, Israel A, Krieg T, Rajewsky K and Haase I. TITLE TNF-mediated inflammatory skin disease in mice with epidermis-specific deletion of IKK2 JOURNAL Nature 417 (6891), 861-866 (2002) PUBMED 12075355 REFERENCE 8 (bases 1 to 3525) AUTHORS Chang NS. TITLE The non-ankyrin C terminus of Ikappa Balpha physically interacts with p53 in vivo and dissociates in response to apoptotic stress, hypoxia, DNA damage, and transforming growth factor-beta 1-mediated growth suppression JOURNAL J Biol Chem 277 (12), 10323-10331 (2002) PUBMED 11799106 REFERENCE 9 (bases 1 to 3525) AUTHORS Zhang Y, Sun S, Chen WC, Kaluzhny Y, Chinnappan D, Yu G and Ravid K. TITLE Repression of AIM-1 kinase mRNA as part of a program of genes regulated by Mpl ligand JOURNAL Biochem Biophys Res Commun 282 (3), 844-849 (2001) PUBMED 11401541 REFERENCE 10 (bases 1 to 3525) AUTHORS Nemoto S, DiDonato JA and Lin A. TITLE Coordinate regulation of IkappaB kinases by mitogen-activated protein kinase kinase kinase 1 and NF-kappaB-inducing kinase JOURNAL Mol Cell Biol 18 (12), 7336-7343 (1998) PUBMED 9819420 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000283.1. On Nov 27, 2020 this sequence version replaced NM_053355.2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR8487231.111302.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-83 JACYVU010000283.1 18495577-18495659 84-210 JACYVU010000283.1 18495931-18496057 211-305 JACYVU010000283.1 18507242-18507336 306-423 JACYVU010000283.1 18508705-18508822 424-493 JACYVU010000283.1 18511444-18511513 494-582 JACYVU010000283.1 18522123-18522211 583-672 JACYVU010000283.1 18523199-18523288 673-797 JACYVU010000283.1 18526734-18526858 798-905 JACYVU010000283.1 18530417-18530524 906-1035 JACYVU010000283.1 18533499-18533628 1036-1230 JACYVU010000283.1 18534493-18534687 1231-1345 JACYVU010000283.1 18535294-18535408 1346-1469 JACYVU010000283.1 18537558-18537681 1470-1621 JACYVU010000283.1 18538250-18538401 1622-1683 JACYVU010000283.1 18538530-18538591 1684-1793 JACYVU010000283.1 18539877-18539986 1794-1843 JACYVU010000283.1 18541183-18541232 1844-1943 JACYVU010000283.1 18541330-18541429 1944-2091 JACYVU010000283.1 18541606-18541753 2092-2219 JACYVU010000283.1 18544208-18544335 2220-2310 JACYVU010000283.1 18547200-18547290 2311-3525 JACYVU010000283.1 18548059-18549273 FEATURES Location/Qualifiers source 1..3525 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="16" /map="16q12.5" gene 1..3525 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="inhibitor of nuclear factor kappa B kinase subunit beta" /db_xref="GeneID:84351" /db_xref="RGD:621375" exon 1..83 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" misc_feature 58..60 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="upstream in-frame stop codon" exon 84..210 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" CDS 106..2379 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /EC_number="2.7.11.1" /EC_number="2.7.11.10" /note="IKK-B; NFKBIKB; IKK-beta; I-kappa-B kinase 2; I-kappa-B-kinase beta; nuclear factor NF-kappa-B inhibitor kinase beta; inhibitor of nuclear factor kappa B kinase beta subunit; inhibitor of kappaB kinase beta; inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta; serine/threonine protein kinase IKBKB" /codon_start=1 /product="inhibitor of nuclear factor kappa-B kinase subunit beta" /protein_id="NP_445807.2" /db_xref="GeneID:84351" /db_xref="RGD:621375" /translation="
MSWSPSLPTQTCGAWEMKERLGTGGFGNVIRWHNQVTGEQIAIKQCRQELSPKNRDRWCLEIQIMRRLNHPNVVAARDVPEGMQNLAPNDLPLLAMEYCQGGDLRRYLNQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEKRLIHKIIDLGYAKELDQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHSKVRQKSEVDIVVSEDLNGTVKFSSSLPFPNNLNSVLAERLEKWLQLMLTWQPRQRGVDPQYGPNGCFRALDDILNLKLVHILNMVTGTIHTYPVMEDESLQSLKTRIREDTGILETDQELLQEAGLVLLPDKPATQCISDSKTNEGLTLDMDLVFLFDNSKMSYETQITPRPQPESVSCVLQEPKRNLSFFQMRKVWGQVWHSIQTLKEDCNRLQQGQRAAMMNLLRNNSCLSKMKNAMASTAQQLKAKLDFFKTSIQIDLEKYREQTEFGITSDKLLLAWREMEQAVEQCGRENDVKVLVERMMALQTDIVDLQRSPMGRKQGGTLDDLEEQARELYRRLREKPRDQRTEGDSQDMVRLLLQAIQSFEKKVRVIYSQLSKTVVCKQKALELLPKVEEVVRLMNEDEKTVVRLQEKRQKELWNLLKIACSKVRGPVSGSPDSMNVSRLSHPGHLMSQPSSACDSLPDSDKKSEELVAEAHALCSRLESALQDTVKQQDRSFTTLDWSWLQMEDEERCGLEQACD"
misc_feature 163..1032 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Catalytic domain of the Serine/Threonine kinase, Inhibitor of Nuclear Factor-KappaB Kinase (IKK) beta; Region: STKc_IKK_beta; cd14038" /db_xref="CDD:270940" misc_feature order(166..180,190..192,229..231,235..237,325..327, 391..402,412..414,418..420,538..540,544..546,550..555, 559..561,601..603,610..612,655..666) /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="active site" /db_xref="CDD:270940" misc_feature order(166..180,190..192,229..231,235..237,325..327, 391..402,412..414,538..540,544..546,550..555,559..561, 601..603) /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270940" misc_feature order(178..180,412..414,418..420,538..540,544..546, 550..552,610..612,655..666) /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270940" misc_feature order(430..432,436..438,445..450,457..459,760..762, 775..777,859..864,868..870,886..897) /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="SDD interface [polypeptide binding]; other site" /db_xref="CDD:270940" misc_feature order(466..468,472..477,577..582) /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="ULD interface [polypeptide binding]; other site" /db_xref="CDD:270940" misc_feature 598..666 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="activation loop (A-loop); other site" /db_xref="CDD:270940" misc_feature 634..636 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by TBK1 and PKC/PRKCZ. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 646..648 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by TBK1, PKC/PRKCZ and PDPK1. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 676..678 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Hydroxyproline. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); hydroxylation site" misc_feature order(790..792,796..801,811..813) /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:270940" misc_feature 1033..1275 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="ubiquitin-like (Ubl) domain found in inhibitor of nuclear factor kappa-B kinases, IKK-alpha and IKK-beta, and similar proteins; Region: Ubl_IKKA_like; cd17046" /db_xref="CDD:340566" misc_feature 1270..2094 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="IQBAL scaffold dimerization domain; Region: IKBKB_SDD; pfam18397" /db_xref="CDD:436466" misc_feature 1477..1542 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="propagated from UniProtKB/Swiss-Prot (Q9QY78.1); Region: Leucine-zipper" misc_feature 2113..2115 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2119..2121 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2128..2130 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2149..2214 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="propagated from UniProtKB/Swiss-Prot (Q9QY78.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 2149..2151 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2170..2172 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2179..2181 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2194..2196 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2218..2220 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2221..2331 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="I-kappa-kinase-beta NEMO binding domain; Region: IKKbetaNEMObind; pfam12179" /db_xref="CDD:432387" misc_feature 2302..2304 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" misc_feature 2314..2331 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="propagated from UniProtKB/Swiss-Prot (Q9QY78.1); Region: NEMO-binding" misc_feature 2323..2325 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /note="Phosphoserine, by autocatalysis. /evidence=ECO:0000250|UniProtKB:O14920; propagated from UniProtKB/Swiss-Prot (Q9QY78.1); phosphorylation site" exon 211..305 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 306..423 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 424..493 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 494..582 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 583..672 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 673..797 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 798..905 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 906..1035 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1036..1230 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1231..1345 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1346..1469 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1470..1621 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1622..1683 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1684..1793 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1794..1843 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1844..1943 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 1944..2091 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 2092..2219 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 2220..2310 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" exon 2311..3525 /gene="Ikbkb" /gene_synonym="AIM-1; IKK2" /inference="alignment:Splign:2.1.0" ORIGIN
tggcgctgagctggctgcgtggggaccccgagttttcatgtcctcagcgggtgtcgctagcggccccgcggcccccggggcagagttagcagggagggcatcgatatgagctggtcaccttctctcccaacccagacatgtggggcctgggaaatgaaagaacgcctcggaactgggggatttggaaacgtcatccggtggcacaatcaggtgacaggtgaacaaattgccatcaagcaatgccgacaggagctcagccccaagaaccgcgatcgctggtgcctagagatccagatcatgagaaggctgaaccatcccaacgtggtggccgcccgggatgtcccagaggggatgcagaacttggcacccaatgatttgcctctgctggccatggagtactgccaaggaggagacctccggagatacttgaaccagttcgaaaactgctgtggcctccgggaaggagccatcctcaccctgctgagtgacatagcatcggctcttagataccttcatgaaaacagaatcatccaccgggacctgaagccagagaacattgtcctacagcaaggagagaaaagattaatacacaaaattattgatctaggatatgccaaggagctggatcagggcagtctgtgcacgtcatttgtggggaccctgcaatacctggccccagagcttctggagcagcagaagtacaccgtgactgttgactactggagcttcggcaccctggcctttgaatgcatcaccggcttccggccctttctccctaactggcagcctgtgcagtggcactctaaagtccggcagaagagcgaagtggacattgttgttagcgaggacttgaacggaacagtgaagttctcaagttccttacccttccccaataatctcaacagtgtcctggctgagcgtctggagaagtggcttcagctgatgctcacgtggcaacctcggcaaaggggcgtggacccccagtacggtcccaatggctgtttcagggccctcgatgacatcttgaacttaaagctggttcatatcttgaacatggtcacaggcaccattcacacataccctgtgatggaggatgaaagtctgcagagcttaaaaaccagaatccgggaagacacagggatcctggagacagaccaggaactgctgcaggaggcagggctggtgctgctccctgacaagcctgctactcagtgcatctcagacagcaagacaaatgagggcctcacactggacatggatctcgtctttctctttgacaacagtaaaatgtcctatgagactcagatcaccccccgaccccaacctgagagcgtcagctgtgtccttcaggagcccaagcggaacctctccttcttccagatgaggaaagtgtggggccaagtctggcacagcatccaaacgctgaaggaagactgtaaccggctgcagcagggacagcgagctgccatgatgaacctccttcggaataacagctgcctctccaagatgaagaatgccatggcctccacggcgcagcagctcaaggccaagttggacttcttcaaaaccagcatccagattgacctggagaagtacagggagcagacggagtttggcatcacatcggacaaactgctgctggcctggcgggaaatggagcaggccgtggagcagtgtgggcgggagaatgacgtgaaggtcctggtagaacggatgatggcactgcagaccgacattgtggacctacagaggagcccgatgggtcggaagcaggggggcaccttggatgacctagaggaacaagcaagagaactctacagaagactcagggagaagccaagagaccaaaggacagaaggtgacagccaggatatggtacggctgctgctgcaagccatccagagcttcgagaagaaagtgcgggtgatttactctcagctcagtaagaccgtggtttgtaagcagaaggccctggagctgctgcccaaagtagaagaggtggtgaggctcatgaacgaggatgagaagactgtggtccggctccaggagaagcggcagaaggagctctggaacctcctgaagatcgcctgtagcaaagtccgaggtccggtgagtggaagcccagatagcatgaatgtgtctcgacttagtcaccctggtcatctaatgtcccagccttccagtgcctgtgacagcttacctgattcagacaagaaaagtgaagaactggtggccgaagcacacgccctctgctcccggctggaaagcgcgctgcaggacacggtgaagcagcaggaccgaagcttcacgaccctagactggagctggttacagatggaggatgaagaaaggtgtggcctggagcaggcctgtgactgaggtgcccgtgaactggcccgcggctcggcatgtgaggatgctctggtacctccagggggacatcccgctctcctggcagctgcgatccttgcccacagcagcctgtgctggcccagtctacacactggacgtcctccaccacagaagcacaacaatgtcagttacaagcccgtgcggcaacaagactgcagtgctgctacacaaagagcttacgacagacgtctaccttgagtgtttccagacagcagccagcctgtcccctttggactgctgcgggggagggagccctgccctcctcgcctttcagctggggtgtcatctggatccagcttccttagacatttaatcagaagcctgatgattctacgtctttcttcctcttcacttccccctggtaaatgtttctaccttctgtgccggtcgttgtggcaaacggcctttgactaagttgtaatgacggtgataccaagctccctgatgtcccggctcctttaagccacagagcgacttacacagccaggcagaacagaaatgcagctacacatcctgagtcccaaagattacctggagtcaactgtcatggagagaaatggaagatgaaggtcctacaccagcccctcccctgctgagcactgtgtgactctgccacctgtcaggtgtgtgaggacgttgctgcctctcacataagctagcagcgttattaaactggttcgttttataaatagtttctattttttgtaacattactcagatatgtatcctaggctcaagggtgtatttccacagtaatactaccactagtacttctgagctcagagggcaacatcatgggaaatttcgtaagattgaacagcgtatctagatcatgtcatttttacatcacacaaaacttgtgtgtttgcgtgcatatgtgtgtatgaaagcgaagcaggctcagattgtcataaacaggtttatttgattagagaataaagttggaacagagaaatgtcagagcggccaccgcagacacagtatgaagcgtcactggtcacgtgagctcagcggtgctgcatgctttctttcccagagattgatgctgtgcactgggaacctgtttgaaaactccgacaataaagatgctggcttaagctcagcgtaaattca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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