2024-04-19 10:44:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_031685 2099 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus golgi SNAP receptor complex member 2 (Gosr2), mRNA. ACCESSION NM_031685 VERSION NM_031685.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2099) AUTHORS Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA. TITLE Defining the membrane proteome of NK cells JOURNAL J Mass Spectrom 45 (1), 1-25 (2010) PUBMED 19946888 REFERENCE 2 (bases 1 to 2099) AUTHORS Suga K, Hattori H, Saito A and Akagawa K. TITLE RNA interference-mediated silencing of the syntaxin 5 gene induces Golgi fragmentation but capable of transporting vesicles JOURNAL FEBS Lett 579 (20), 4226-4234 (2005) PUBMED 16081076 REFERENCE 3 (bases 1 to 2099) AUTHORS Peng J, Huang CH, Short MK and Jubinsky PT. TITLE Magmas gene structure and evolution JOURNAL In Silico Biol 5 (3), 251-263 (2005) PUBMED 15984936 REFERENCE 4 (bases 1 to 2099) AUTHORS Zhang T and Hong W. TITLE Ykt6 forms a SNARE complex with syntaxin 5, GS28, and Bet1 and participates in a late stage in endoplasmic reticulum-Golgi transport JOURNAL J Biol Chem 276 (29), 27480-27487 (2001) PUBMED 11323436 REFERENCE 5 (bases 1 to 2099) AUTHORS Lowe SL, Peter F, Subramaniam VN, Wong SH and Hong W. TITLE A SNARE involved in protein transport through the Golgi apparatus JOURNAL Nature 389 (6653), 881-884 (1997) PUBMED 9349823 REFERENCE 6 (bases 1 to 2099) AUTHORS Hay JC, Chao DS, Kuo CS and Scheller RH. TITLE Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cells JOURNAL Cell 89 (1), 149-158 (1997) PUBMED 9094723 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC061994.1. On Jan 1, 2004 this sequence version replaced NM_031685.1. ##Evidence-Data-START## Transcript exon combination :: BC061994.1, CO573750.1 [ECO:0000332] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2099 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="10" /map="10q32.1" gene 1..2099 /gene="Gosr2" /note="golgi SNAP receptor complex member 2" /db_xref="GeneID:64154" /db_xref="RGD:62079" exon 1..42 /gene="Gosr2" /inference="alignment:Splign:2.1.0" misc_feature 2..4 /gene="Gosr2" /note="upstream in-frame stop codon" CDS 14..652 /gene="Gosr2" /note="membrin; 27 kDa Golgi SNARE protein" /codon_start=1 /product="Golgi SNAP receptor complex member 2" /protein_id="NP_113873.1" /db_xref="GeneID:64154" /db_xref="RGD:62079" /translation="
MEPLYQQTHKQVHEIQSHMGRLETADKQSVHLVENEIQASIDQIFSHLERLEILSSKEPPNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRQAKEQQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLQNIHHGMDDLIGGGHSILEGLRAQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMFLVVQYLT"
misc_feature 14..16 /gene="Gosr2" /note="N-acetylmethionine. /evidence=ECO:0000250|UniProtKB:O14653; propagated from UniProtKB/Swiss-Prot (O35165.2); acetylation site" misc_feature <32..>334 /gene="Gosr2" /note="Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; Region: COG4372" /db_xref="CDD:226809" misc_feature 365..373 /gene="Gosr2" /note="propagated from UniProtKB/Swiss-Prot (O35165.2); Region: IxM motif, signal for cargo packaging into COPII-coated vesicles. /evidence=ECO:0000250|UniProtKB:O14653" misc_feature 371..568 /gene="Gosr2" /note="SNARE motif of GS27; Region: SNARE_GS27; cd15863" /db_xref="CDD:277216" misc_feature order(386..394,398..415,419..424,431..436,440..457, 461..466,470..478,482..499,503..508,512..520,524..529, 533..541,545..550,554..556) /gene="Gosr2" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277216" misc_feature 473..475 /gene="Gosr2" /note="zero layer; other site" /db_xref="CDD:277216" misc_feature 584..646 /gene="Gosr2" /note="propagated from UniProtKB/Swiss-Prot (O35165.2); transmembrane region" exon 43..107 /gene="Gosr2" /inference="alignment:Splign:2.1.0" exon 108..216 /gene="Gosr2" /inference="alignment:Splign:2.1.0" exon 217..349 /gene="Gosr2" /inference="alignment:Splign:2.1.0" exon 350..490 /gene="Gosr2" /inference="alignment:Splign:2.1.0" exon 491..2075 /gene="Gosr2" /inference="alignment:Splign:2.1.0" ORIGIN
ctaggccggcatcatggagccactataccaacaaacgcacaagcaggtccacgagatccagtctcacatgggacgcctggagacggcagacaagcagtctgtgcacttagtggaaaatgaaatccaagcaagcatagaccagatattcagccacctggagcgtctggagattctgtcaagcaaggagccccccaatagaaggcagaacgccaaacttcgtgtcgaccagctaaagtacgacgtccagcacttgcagactgccctcaggaactttcagcaccggcgccaagccaaggagcagcaggagagacagcgagatgagcttctgtctcgcaccttcaccactaacgactctgacaccaccattcccatggatgaatcactgcagtttaactcctccctccagaacattcaccacggcatggatgacctcattggaggcgggcacagtattctggagggactgagggcccagagactgaccttgaaggggactcagaaaaagatcctcgacattgccaacatgctcggcttgtccaacaccgtgatgaggctgattgagaagcgggccttccaggacaagtacttcatgatcggtgggatgctgctcacttgtgcagttatgtttctcgtggtgcagtacctgacatgagccagctgtacccagcactggacagccttcccattgtgtgcgcatgtgcaagcaagaagtgggctgggaggcccttttgaaatgtatgccttaactgtgaagacacctctccctccaggactaatcgtggcttagtatcaaacctgctttgttttctgtgacatctggggagtaggacctagggtcaccaagatgtgtggtacttaggaggtggttcaagaccctgttctctggctttcacgggggtggggtggggtggggagggatggctaggttttgtggtttgtccacacagctgatgcagaggaaagtgtgcattatgaggcctgcacacaggactgtccactctgttcacttctggtcatcaccagcttttgtggctcctgagaggtgggctggagcacagtgagatgaggaaagaggtctttccttacaccatctgggatggatcagttctcacatccttgcttctagccactactcggccccagcccctaagaaaacaggacatgtaggtgactaaccacgaacaccagcaccctttcctggaagcagctactccagggaagcagagacatcagtgctgctgctgataatgtaagcgtttccgtgccacggttgctgggtgtttgtccttcctgaagtgaggctagcagtgttcccagggagtgtttagtctggaccctgaagtcctgagtcaccaggacttgatacagcaattggctcttgcagttcggagacagtggctcagcacctccacccaggctctgatcttgggcctttaaaaggagccatgagcaaagggtgacttgtcagttacagattcatctaattctgccatctcagatcctttgactatctctcccttgaaatacattagcaatatatcaatcagctaagcctccattttccccagccctcgtaggccaccctggaggtgtccctggtaagaatgtttttgtgagactgtttcagggaccaggtcattctcacttgtcccagacgtgattaaggctatgtcagtacctggtgtattgcagaatttgtttgaaagttaatgtatctcaagcacacctattgtgattaatcttcgcaagtactagaacggtccagtgagtttatttgttcatcagtaacgagccctgcccacccaaacagttctaaatttagtagcctcctggtgggaaaaacagatgccaggattcctaagaactggaaactggtcagtattaatccttcctctgattgccccacctacttcctgtgtttgcttaagtcctgtgcttttccctcctcacagtgcactatgtctcaccctcctactgagttgcagtactcctctctcccatacgtctgtggcatcctgtccacatctgtggcatccttttgggaactgtctcaattgaacacattttaaacctgaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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