LOCUS       NM_001419547           12584 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl),
            mRNA.
ACCESSION   NM_001419547 XM_008762074
VERSION     NM_001419547.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000003.1.
            
            On Apr 7, 2023 this sequence version replaced XM_008762074.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-683               JAXUCZ010000003.1  111236541-111237223 c
            684-3227            JAXUCZ010000003.1  111081362-111083905 c
            3228-3839           JAXUCZ010000003.1  111080352-111080963 c
            3840-3955           JAXUCZ010000003.1  111077941-111078056 c
            3956-4175           JAXUCZ010000003.1  111073746-111073965 c
            4176-4309           JAXUCZ010000003.1  111072829-111072962 c
            4310-4472           JAXUCZ010000003.1  111065427-111065589 c
            4473-4532           JAXUCZ010000003.1  111063316-111063375 c
            4533-4684           JAXUCZ010000003.1  111057954-111058105 c
            4685-4856           JAXUCZ010000003.1  111054501-111054672 c
            4857-5020           JAXUCZ010000003.1  111044888-111045051 c
            5021-5205           JAXUCZ010000003.1  111037534-111037718 c
            5206-5333           JAXUCZ010000003.1  111030726-111030853 c
            5334-5515           JAXUCZ010000003.1  111026628-111026809 c
            5516-5733           JAXUCZ010000003.1  111023016-111023233 c
            5734-5863           JAXUCZ010000003.1  111015737-111015866 c
            5864-6214           JAXUCZ010000003.1  110984930-110985280 c
            6215-6312           JAXUCZ010000003.1  110975222-110975319 c
            6313-6461           JAXUCZ010000003.1  110973431-110973579 c
            6462-6613           JAXUCZ010000003.1  110971256-110971407 c
            6614-12584          JAXUCZ010000003.1  110961478-110967448 c
FEATURES             Location/Qualifiers
     source          1..12584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q32"
     gene            1..12584
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="RIKEN cDNA D430041D05 gene like"
                     /db_xref="GeneID:100362814"
                     /db_xref="RGD:2323964"
     exon            1..683
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    437..439
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="upstream in-frame stop codon"
     CDS             449..6895
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /codon_start=1
                     /product="UPF0606 protein KIAA1549L homolog"
                     /protein_id="NP_001406476.1"
                     /db_xref="GeneID:100362814"
                     /db_xref="RGD:2323964"
                     /translation="

MALQEAKPQGPSKAGPAAREPRDRPREPGLCGAGGIAARCQGVKSSGARGSEDVLPLRPLLLGLLLLAALSGNCRADSGADNLQTHVTPTSESFPLGKLLPISPTWPFLEVKSSSAADRIKNVLGQPPDNTTLTQLSQTPLPKAHRKTRAHVDFSSSLYQGSGHSASLDLAKDPTETLVQTRPEGGREAADMSGLPRTSMLPPLPTAPSATSSAISPSQPLVGMPSLSKHPLRSDSFLFLPPPPSSSLVPDSLHSITPPKPVERPTKVPLFPQTTPADSSSGQSPVHALNPFFHKTNLFSSRNAQTFIGIPRLDFSTSLTKQYSKLSPSENPRLAASSTPGVLSSIAELDHLSLPSLAPGGLPGGTSSWSMLEEASSPVSTQPVHTAGPVRGHSAVSFPIYLRTAAASHEAWAPRFQTAESVMTSRELAPVPPTNSSANWPHLSEVPENSRKPTLSPENKPSSLVPPPPQPLTTLSQGQVVHSEAASASPQKGAGAPPSPLTVLQPSKDQAHPAPAPEAPTSQEDDRDEYLPDAATHLLSSKLPDLPPTIWTFPQQKEGKTAAIFWTNEKANGTVSLWALPTKEAPSRRAVNDSTSDFNTGRMSPLIMTALRTDLSPPGSFPSPMPTTQAPSPGVSSTKLGTLAAVTSRSELPASASKQVTALSSSTGVHDFPTMGGTRKPAATDVFQGFLSAETAPLATQSSISDLQQQTNHDVNTHTINSTHWEPHPASAALPSGTTSAANALQPQNFKEIAGQLVAADGFNLQTAALSPRPSQPPQPSEEAAVESHTDLRLAGKHAGDFDPEMVHYHASTSQHPMSQLPIRPAHPFWPTWPSLASAASLHQMLSDGTDTGPQISSDIYLSPGESGSPQFQSVLEDRSSTASPSVSTGAFSRTPSKVLRTSRRPKKWTGAATNTGSLFPGTQKTVETSVSSKGELSATVAAAATTTLFLRKSSPAPLSAALTAKGTGGGGSLAKSSLTTALAKNVTNKAAPGPKVTAGTVHTAFPFTPTYMLARTAHSLSTHTAMQGASGSVSGLLSTTHLPKKPQAMHTGLPNPTRPDTPRASTPRPLTITAALTSLTASVKATRLPSLQTGNTDAAFPAVSTAMVTTGRMASNLDCQMSHKFLVKTVFFLTQRRIQSSESLKLGVTKGLTQALRKAFHQNDVSAHVDILEYSHNVTVGYYATKGRLVYLPAVVMDVLGVYGVSNVTADLKQHAPNLQSVAVLASPWKPQPAGAFQLKTVLQFVSQSDNIQSCRFAQTMEQRLQKAFQDAERKVLGTRSNLTVQIVSTSNASQAVTLVYAVGNQSSFLNGTMASSLLSQLSAELVGFYLTYPPLTIAEPLEYPNLDTSETTRDYWVITVLQGVDNSLVGLHNQSFARVMEQRLAQLFMMSQQQGRRFKRATTLGSYTVQMVKMQRVPGPKDPAELTYYTLYNGKPLLGTAAAKILSTIDSQRMALTLHHVVLLQADPVVKNPPNNLWIIAAVLAPIAVVTIIIIIITAVLCRKNKNDFKPDTMINLPQRAKPVQGFDYAKQHLGQQGADEEVIPVTQETVVLPIPVRDTPQERDTAQDGSTIKTAKSTETRKSRSPSENGSVISNESGKPSSGRCSPQNGMTQQKVTKEESRKRNGTASDEEEGAGLFDSAGKAAADPFDTSSGSVQLIAIKPSALPVVHPASDRGPESSAALNGEVSKALKQKSDIEHYRNKLRLKAKRKGYYDFPPVDAGKGLTERKKMYEKAPKEMEHALEPDPELCAPFAESKNRQQMKNSVYRSRQSLNSPSPGETEMDLLVTRERPRRGIRNSGYDTEPEIIEETNVDRVHEPRGYGRARQMKGHSETSTLSSQPSIDEVRQQMHMLLEEAFSLASAGHAGQSRHQEAYGSTQHLPYSEVVTSAPGTMTRPRAGVQWVPTYRPEMYQYSLPRPAYRFSQLPEMVMGSPPPPVPPRTGPVAVASLRRSTSDIGSKTRMAESTGPEATQLHDSASFAQVSRGPVSVTQLDQSALNYSGNTVPAVFAIPAANRPGFTGYFIPTPPPSYRSQAWMSYAGDSELPSQWADSVPLPGYIEAYPRSRYQQSSPSRLPRQYSQPTNLHPSLEQAPVPSAAASQQSLTENEPPDTPLTNISTAALVKAIREEVAKLAKKQTDMFEFQV"

     misc_feature    <2090..>2686
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); Region: Herpes_BLLF1; pfam05109"
                     /db_xref="CDD:282904"
     misc_feature    4136..6052
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="Domain of unknown function (DUF3827); Region:
                     DUF3827; pfam12877"
                     /db_xref="CDD:463737"
     exon            684..3227
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3228..3839
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3840..3955
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3956..4175
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4176..4309
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4310..4472
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4473..4532
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4533..4684
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4685..4856
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4857..5020
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5021..5205
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5206..5333
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5334..5515
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5516..5733
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5734..5863
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5864..6214
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            6215..6312
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            6313..6461
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            6462..6613
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            6614..12584
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcaatgaggcgccgctctgagctgcagtagcattcgcggctggagccggagtccagcgatccagtgaaccgacagggacagagacccgggcgcaggggcggcggcgggcggcacgctgcacgagccaggtccgcgggtccccacgtctcgtagcctcgcgctcgaggtgcagcatccggccccggggaggggaccagggcgccgcccgtcccaccctcgccataccgtgggaacccccatgcaaccccggtacccgcgcgcctgaaaccccggctccgttgagcccgcctccgaccgaggcaggacgagcgagcagctcgcacctcctgcctccctccgactcccgggccatggcccgagatgcccggtgaggaacggtgcgcggagggctgggctcccgggcgcggcgtggaaagaggcagcggcctggatgtatgaacagtccctatggctctgcaggaggcgaagccccagggcccgagcaaagctgggccggcggcgcgggagcccagggatcggccccgggagccagggctctgcggggcgggcgggatcgccgcgcgctgccagggcgtgaagagctccggggcccgcggctccgaggatgtgctgccgctgcggccgctgctgctgggactcttgctgctggctgccctctccgggaactgccgggccgactcgggggcagacaatctacagacacatgtcactccgacctcagagtcctttccccttgggaaattgttaccaatttcaccaacatggcctttcttggaagtcaagtcttcctcagcagcggacagaatcaagaatgtgctgggacagcctcctgacaacacaaccttgacacagctatcccagacacctctgcccaaggcacaccgtaagaccagggctcatgtggacttctcctcatccctttaccaaggaagtggacatagcgcctccctggatcttgccaaggaccccactgagactctggtccaaacaaggcctgaagggggaagagaagcagcggacatgtcaggtttgcctcgcaccagcatgctccccccattacctacagccccatcagccacctcgagtgctatctccccatcacagcccttggtagggatgccgtccctttcgaagcatccgttgaggtcagacagctttctatttctccctccaccaccatcatcttcattggtccccgattcactgcattccatcacccctcctaagcctgtagaacgtcccaccaaagtgcctttgtttccccaaacgacaccagctgactcctcttcaggtcagagcccagttcatgccctaaacccattttttcataaaacaaacctcttctcatccagaaatgcccagactttcataggtatccctcgtctagacttttctacatccttaacaaagcagtactctaagctgtccccatcagagaatccccgcttagcagcttcctcaactcctggggttctgagctccattgcagaactggaccacctgtctctcccttccctagcccctggaggccttccaggtggaacctcctcgtggtccatgttggaagaggcttcgagtcctgtatccacccagccagtccacacagcggggcctgtcagagggcacagtgcagtatcatttcccatttatctgcgcacagcggcagcaagccatgaggcctgggccccacgcttccagactgcagagtcagtgatgaccagcagagagctagcccctgttcctcctacaaatagttctgccaactggccacatttgtcagaagtgccagagaattccagaaagcccacactctccccagaaaacaaaccttcctctttggtacctcctcctcctcagccgctcactacactcagtcaagggcaagtggtccattctgaggcagcttctgcatcaccacagaagggggcaggtgcccctccctccccgcttactgtcctccagcccagtaaggatcaggcccatccagcccctgcaccagaggcacccacgtcccaggaagatgaccgtgacgagtaccttcccgatgcagccacacacctcctctcaagcaaacttcctgatcttccccctacgatttggacatttcctcagcaaaaggagggcaagacagcagccattttctggacaaatgaaaaggcaaacgggacagtttctctgtgggctcttccaactaaagaggctcctagtcgtcgtgcagtgaatgactccacctctgattttaacacaggtcgtatgtcacctctcatcatgacagcactaagaacagacctctctcctccagggtcatttccatcacccatgcccaccacacaggccccttctcccggcgtttccagcaccaagctggggactctcgcagctgtcacaagccggtcagagttgccagcttcagcttccaaacaggtgacagcactttcctcctccaccggtgtccatgatttcccaacaatgggaggcacaagaaagccagcagccacagatgttttccagggctttctttcagcagaaactgcaccgctcgccacacagtcatcgatatctgacttgcagcagcagacgaatcacgatgtaaacactcatacaattaactccacacactgggaacctcatccagcttcggcggctcttcccagtggtacgacttcagctgccaatgcattacagcctcagaatttcaaagagattgctggacagctggtggctgcagacggctttaacctccagactgcagccctcagtccccgtcccagtcagcctcctcaaccgtcagaagaagctgcagtcgaaagccacacagacctccggctcgcaggcaagcatgccggagactttgacccagaaatggttcattaccacgcatctacaagccaacatcctatgtcacagctgcccatccggccagcccatcctttttggccgacctggccgagtttagcttctgcagctagcttgcaccaaatgctttcagacggaacagacacaggaccacaaatttccagtgacatctatctatcgccaggggaaagcggctccccacaattccagagtgtcctggaagaccgctcatctacagcctcaccttccgtatcaaccggtgccttttccaggaccccttccaaagtgctgcgaacctctcggcgccccaagaaatggacaggtgcagccactaacacgggtagtttgtttcctggtacccagaaaacagtggaaacctcagtgtcctccaagggagaactgtcagccaccgtagcagcagccgccaccaccacactgtttctgaggaaatcaagtccagcgccactgtctgcagcccttactgctaagggcactggcggtggcggcagcttagccaagagcagtctgaccactgctctagctaaaaatgtcaccaacaaggcagcaccaggcccaaaggtgacagcagggacagtccacacagccttcccattcacaccaacctacatgcttgcccggacagcacacagcctgagcactcacacagccatgcaaggggcctcaggctctgtgtcaggcctgttgtccacaacacacctccccaagaagccccaagccatgcacactggcctccctaatcctaccaggccagacacacccagagcatccacaccccgcccactgacaatcacagccgcgctgacgtcccttacagcatccgtaaaggccactagactgccttctttgcagacaggaaacacagatgctgcttttccggctgtgtctactgcaatggtcacaactggcaggatggcatccaacttggactgtcagatgtcccacaagttcctcgtgaagacagttttcttcctaactcagaggagaatacagagcagtgagtccttgaagcttggtgtaaccaaagggctcacacaagcattgcggaaggctttccaccagaatgacgtctccgctcacgtggacattctggaatattctcataatgtcacagttggctattatgctaccaaagggaggctggtgtatttgccggctgtggtgatggacgtgctgggtgtgtatggagtcagcaacgtcacggccgatctgaagcagcacgctcccaacttacagtctgtggcagtgcttgcctccccatggaagccccagcctgcaggtgccttccagctgaagacagtgctgcagtttgtaagccagtcagacaacatccagtcctgcaggtttgcccagacaatggagcagaggctgcagaaggcattccaggatgcagagaggaaggtcctcggcaccaggagcaacctgacagttcagatcgtgagcacgtccaatgcctcccaagccgtcacactggtgtatgctgtgggcaatcagagctccttcctcaacggcaccatggccagcagcctccttagccagctctcagctgagctggtaggattctacctcacctaccctccactcaccatcgctgaaccactggaatatcccaaccttgacacatcagaaacaaccagagactactgggtcatcacagtgctccagggtgtggacaactcgctggtgggtctgcacaaccagagctttgcccgggtcatggagcagcgcctggctcagctgttcatgatgtcccagcaacagggtcggcggtttaaacgtgctaccaccttgggaagctacactgtgcagatggtgaagatgcagcgagtgccaggaccgaaggacccggcggagctgacctactacacgctgtacaatgggaagccactgctggggactgcagcagccaagatcctgagcaccattgactcccagaggatggccctgaccctgcatcacgtcgtcctgctgcaagctgaccccgtggtaaagaacccacccaacaacctgtggatcatcgctgcagtgctggctcccatcgccgtggtcaccatcatcatcatcatcatcactgccgtgctctgtaggaagaacaagaacgacttcaagccagacaccatgataa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