LOCUS       NM_001399682            3756 bp    mRNA    linear   ROD 18-JUN-2023
DEFINITION  Rattus norvegicus transmembrane protein 167A (Tmem167a), mRNA.
ACCESSION   NM_001399682 XM_002728992
VERSION     NM_001399682.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3756)
  AUTHORS   Wendler F, Gillingham AK, Sinka R, Rosa-Ferreira C, Gordon DE,
            Franch-Marro X, Peden AA, Vincent JP and Munro S.
  TITLE     A genome-wide RNA interference screen identifies two novel
            components of the metazoan secretory pathway
  JOURNAL   EMBO J 29 (2), 304-314 (2010)
   PUBMED   19942856
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000065.1.
            
            On Jan 12, 2022 this sequence version replaced XM_002728992.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213661.1, FQ220007.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                JACYVU010000065.1  13703069-13703128
            61-170              JACYVU010000065.1  13712428-13712537
            171-205             JACYVU010000065.1  13714986-13715020
            206-3756            JACYVU010000065.1  13718466-13722016
FEATURES             Location/Qualifiers
     source          1..3756
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..3756
                     /gene="Tmem167a"
                     /note="transmembrane protein 167A"
                     /db_xref="GeneID:100359823"
                     /db_xref="RGD:2323318"
     exon            1..60
                     /gene="Tmem167a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    28..30
                     /gene="Tmem167a"
                     /note="upstream in-frame stop codon"
     CDS             58..276
                     /gene="Tmem167a"
                     /EC_number="3.6.5.4"
                     /note="rCG44733-like; protein kish-A"
                     /codon_start=1
                     /product="protein kish-A precursor"
                     /protein_id="NP_001386611.1"
                     /db_xref="GeneID:100359823"
                     /db_xref="RGD:2323318"
                     /translation="

MSAIFNFQSLLTVILLLICTCAYVRSLAPSILDRNKTGLLGIFWKCARIGERKSPYVAICCIVMAFSILFIQ"

     sig_peptide     58..135
                     /gene="Tmem167a"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    85..189
                     /gene="Tmem167a"
                     /note="Protein of unknown function (DUF1242); Region:
                     DUF1242; pfam06842"
                     /db_xref="CDD:429150"
     exon            61..170
                     /gene="Tmem167a"
                     /inference="alignment:Splign:2.1.0"
     exon            171..205
                     /gene="Tmem167a"
                     /inference="alignment:Splign:2.1.0"
     exon            206..3756
                     /gene="Tmem167a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atcctcttccgccccggcccggaagggtgatgtggctggaccagcaccggcctcactatgtctgccattttcaattttcagagtctattgactgtaatcttgctgcttatatgtacgtgtgcttatgtgcgatccctggcacccagcatcctggacagaaataaaactggactattggggatattttggaagtgtgcccgaattggtgaacgcaagagtccttatgtcgccatatgctgtatagtgatggccttcagcatcctcttcatacagtagctttggaaactaccagcacgtgattgccatcagactgtacacaggacgtgcctccagaaaataacgggagaatggttaagcctcttgtctctgaacatggaatgagataaatttcgagatgctgttctctctttttatgctattggaccaatgagctgtatgaataattacgatgtaacagttaatacataggaacgtgattgcagccatcgacctcggttctctcactccagtattacactctacaaacgtcatcctgttacgtcaggaccgcttttcctaaggttctccaggcacgaagtagaaacccagtggccagttccacaggcttctttgactagggcttcaaaataatgtcttcacacagtgataccttctagcgactggcctatttttattgagaaaagaaaatggttctatttttgttgttactgttcttaggaattgcattcatatttaaacccttttgattgctaaccagagtacctctattcttggcaaattctgtactttattacaggtgtttaaaatagtttaaacaaaactgcatttctttaattagccttagagttgggcttctagtcacatatgtatggctgccatcctgtgaaggagagtatcttagaatgacaaaagcggcaagcagaacgatgactgaatatgcattatacatttttcgttctctgtggtattgagtcttccaaatagaacatccatgtagttacccaaatgcgttatttgtggtgtttttaatgcagcactttgcttctggtttatgtcctgtcagcgtgaactggaatctcttctgtaactttgtaggtgataaacatacctcatactgcttagtctgggtactgtgctctcagtgtatttcagctttcacacagattgggaatagacacaagtgaagcatacatattcaaaggatacgtgcaggtttgtgtccaacatttcttcaggtcagctgaaagtcactcactacttcaaagcaaagaggaagtaaatcctagctggaagcacttcatagcatttattaattaattactgggttcgactgctcctttaaaagttaaaaaaaaaaaaaagaaaaaagaaaacctttttcttagaagtgaggtttctataaaagccaagcgttggacttgaagacttattgtaaagcagtataccactgtgcagcccaaatgaccaccacagctagctaaaccaccagctttgaaatagtgctctaggccccatggattacagtctagactaaggtctaggaaagcttacttggtgtattttacgggttgcttgttttccaaaagatctttgcaatgtctatatctagttaaaactggtctaatttactttgaatgtgaaatcaggttatgataattactctactctgaaatttaccttgggcttagtattaggtcaaagattttcactgtgtcccaaaagtaggactctctcctctgcacattaagtagtcacctttcagggttcgatttttggttggccatctgttcatctccactaccaactgaagtttccagaaatgtggtcaacttctttcctaagttaacatacatctcataaaaatggagagaataaagagttgtctttagtttgacattttagacaatgtaggtggaaattagagaaagacatagttaacttgaagcttccaggtaacataagactttcatcattacgtagattctgggcattctgggcaggtatttctagtccccaccctcctgaacgtttacagtacaggcactttggaggtgtaggaaggctgcaaagacaaagatcttacaaagaaatgcaattagcatttttgatgtgcaaacagtgactcctgttttctaagccacagggtcctgtgggaggtgtgaagcccacagaatagttagctgtctttgttagtggggtgtggaggagcagtaaagcacgccaggcagctggcctttgcacagacggtaaacacagtgtaggtggcaatagggggcgagaggcactaagacccaggcctgacaatgttcagatgttcgccctagctactttgttggctctagaaccttgaagccatgtctccagatttgttttgttttgggttccccatttgtttcatctgtgtcattgacaggcaaggagacatgtattccttccaggtagtcttgcaagaggggcaaaaaggccttgtgttaaattggttttaatagttttaaaaagttaaaatatcaattcggtgtcttgctgatgtctttaatatgctggaaactaccatatatgtttcaattcaaggtgtttcctgctggggttagtaagaatatttataaatttataataaatttgtttatcttcttaataaaattagtcttgtaccatagggtgacacagattcccatacattaactttttcaagtttacaaagtcaaacaaatctgcctccatttgtgaaaattatttaatacttattaataatatttttttcaggaaacatgtacacaattggtatggcatgtgaccattgaaaataaatgagtagttgatctgtattcatagtgtccatgaaagatgaaatgaatgtctatgaagtataatgtgctaacacttattcttgagataatcccagcattctttaaaaaaaaaaaaaaggaagagtgaagatgcattgtgggtagaacgtctcagagaacatggattaaacggaacttgacagtgttgttttaaaaacacaattctgtgtttgggattatatgtcccttagtttgttgtggcacatgtgaagtatggcgtggccagacagatgttatatcctggaaagtcatgtattttacctacctcaaaactgaagctgagagtttgtttcccctcctgcctcacaaatccttcaggaggataataaaatctcccttggtttatgagcaagcaaagttgacaaagggatacactagtagattctcctgagacttttgtaaacattgtagaggcaactggccaatgaaggctgtgttttcagtaaaatcccatattctagctgctaaatgcagccccagctgttaaaacaaacatccatcccaaaagtgcactgtttacatttcctggacatacagaaaatatttctacttatcaagaacttaagctccacaaaaggctttgagaagttacccaacccttgaaatctgaaaacatgaatggaaaattcttaggggttgttcttctgttcctttggtatcatctagtaataataaatgttctcaaaatggtgctagcagtcaccgtggcaacagggagtcatgactaacttctgagaaataacttcatatcatttccactttgccctaaactagttcctaaataatctggaagagcatttcagtaccttttggagaaagaactataattcatgtttaaaagaggaggtaatcatcttagtctctggttagtttacgtgcctgctatgtaataaaaaatgaactgtcaaaa

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