2024-04-19 06:29:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001169115 4470 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus trafficking protein particle complex subunit 11 (Trappc11), mRNA. ACCESSION NM_001169115 XM_001059837 XM_224848 VERSION NM_001169115.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 4470) AUTHORS Matalonga L, Bravo M, Serra-Peinado C, Garcia-Pelegri E, Ugarteburu O, Vidal S, Llambrich M, Quintana E, Fuster-Jorge P, Gonzalez-Bravo MN, Beltran S, Dopazo J, Garcia-Garcia F, Foulquier F, Matthijs G, Mills P, Ribes A, Egea G, Briones P, Tort F and Giros M. TITLE Mutations in TRAPPC11 are associated with a congenital disorder of glycosylation JOURNAL Hum Mutat 38 (2), 148-151 (2017) PUBMED 27862579 REFERENCE 2 (bases 1 to 4470) AUTHORS Scrivens PJ, Noueihed B, Shahrzad N, Hul S, Brunet S and Sacher M. TITLE C4orf41 and TTC-15 are mammalian TRAPP components with a role at an early stage in ER-to-Golgi trafficking JOURNAL Mol Biol Cell 22 (12), 2083-2093 (2011) PUBMED 21525244 REFERENCE 3 (bases 1 to 4470) AUTHORS Wendler F, Gillingham AK, Sinka R, Rosa-Ferreira C, Gordon DE, Franch-Marro X, Peden AA, Vincent JP and Munro S. TITLE A genome-wide RNA interference screen identifies two novel components of the metazoan secretory pathway JOURNAL EMBO J 29 (2), 304-314 (2010) PUBMED 19942856 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000282.1. On or before Dec 16, 2009 this sequence version replaced XM_224848.4, XM_001059837.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-249 JACYVU010000282.1 8535212-8535460 250-475 JACYVU010000282.1 8537882-8538107 476-645 JACYVU010000282.1 8539084-8539253 646-716 JACYVU010000282.1 8540752-8540822 717-831 JACYVU010000282.1 8541739-8541853 832-931 JACYVU010000282.1 8543866-8543965 932-1005 JACYVU010000282.1 8544286-8544359 1006-1102 JACYVU010000282.1 8545517-8545613 1103-1236 JACYVU010000282.1 8548494-8548627 1237-1384 JACYVU010000282.1 8551860-8552007 1385-1478 JACYVU010000282.1 8553712-8553805 1479-1558 JACYVU010000282.1 8554439-8554518 1559-1637 JACYVU010000282.1 8554610-8554688 1638-1692 JACYVU010000282.1 8554764-8554818 1693-1838 JACYVU010000282.1 8555140-8555285 1839-1900 JACYVU010000282.1 8555915-8555976 1901-2033 JACYVU010000282.1 8556069-8556201 2034-2164 JACYVU010000282.1 8557424-8557554 2165-2320 JACYVU010000282.1 8558816-8558971 2321-2508 JACYVU010000282.1 8560721-8560908 2509-2657 JACYVU010000282.1 8561013-8561161 2658-2779 JACYVU010000282.1 8563038-8563159 2780-2899 JACYVU010000282.1 8563624-8563743 2900-2965 JACYVU010000282.1 8565325-8565390 2966-3122 JACYVU010000282.1 8565492-8565648 3123-3234 JACYVU010000282.1 8568412-8568523 3235-3326 JACYVU010000282.1 8571067-8571158 3327-3460 JACYVU010000282.1 8572845-8572978 3461-3628 JACYVU010000282.1 8575229-8575396 3629-4470 JACYVU010000282.1 8580524-8581365 FEATURES Location/Qualifiers source 1..4470 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="16" /map="16q11" gene 1..4470 /gene="Trappc11" /gene_synonym="RGD1309765" /note="trafficking protein particle complex subunit 11" /db_xref="GeneID:290746" /db_xref="RGD:1309765" exon 1..249 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" misc_feature 185..187 /gene="Trappc11" /gene_synonym="RGD1309765" /note="upstream in-frame stop codon" exon 250..475 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" CDS 272..3673 /gene="Trappc11" /gene_synonym="RGD1309765" /note="trafficking protein particle complex 11" /codon_start=1 /product="trafficking protein particle complex subunit 11" /protein_id="NP_001162586.1" /db_xref="GeneID:290746" /db_xref="RGD:1309765" /translation="
MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRSKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDIIASERAAALCNVCELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQHAKALCNHDAAVVYPSPDPLETPTGVLDFYGQRPWRQGILSFDLSDPEKEKAGILAIQLKERSVVHSEMIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEAWWTLLTSILTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLMNVLMNESPDPEPDCDALAVKTAQKLWADRVSLAGSNVFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDVYLKADCPHPIRFSKLCVSFNNQGYNQFCVLEEASKASEVLENLTQGKMCLVPGKTRKLLFKFVAKTEDVGKKIEITSVDLFLGSESGRCVVLSWQGGGGDAASSQEALQAARSFKRRPKLPDDEVHWDSIIVQASTMIISRVPNISVHLRHEPPALMNEMYCLVVTVQSQEKSQIRDVKLTAGLKPGQDANLTQKTHVTLHGAELCDESYPALLTDIPVGDLNPGEQLEKTVYVRCGTVGSRMFLVYVSYLINTTVEGKGIMCKCHKDETVTIETVFPFDVAVRFVSTKFEHLERVYADIPFLLMTDILSASPWALTIVSSELQLAPSMAAMDHLESQIDKVVLQTGESASECFCLRCPSAGNLEGGVATGHYIISWKRSSGMENIPAISTIITLPHVIVENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTKQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLLEDTSIAAA"
misc_feature 1058..1837 /gene="Trappc11" /gene_synonym="RGD1309765" /note="Foie gras liver health family 1; Region: Foie-gras_1; pfam11817" /db_xref="CDD:371742" misc_feature 3377..3556 /gene="Trappc11" /gene_synonym="RGD1309765" /note="Gryzun, putative Golgi trafficking; Region: Gryzun-like; pfam12742" /db_xref="CDD:403829" exon 476..645 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 646..716 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 717..831 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 832..931 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 932..1005 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1006..1102 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1103..1236 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1237..1384 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1385..1478 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1479..1558 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1559..1637 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1638..1692 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1693..1838 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1839..1900 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 1901..2033 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 2034..2164 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 2165..2320 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 2321..2508 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 2509..2657 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 2658..2779 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 2780..2899 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 2900..2965 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 2966..3122 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 3123..3234 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 3235..3326 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 3327..3460 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 3461..3628 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" exon 3629..4470 /gene="Trappc11" /gene_synonym="RGD1309765" /inference="alignment:Splign:2.1.0" ORIGIN
atggaacaccttcctaacaagaaaccccgttctattccaggactggtgtgcggtactgtcactcaagcccaggaagtgcttcctgtgccaacggaggcggggaaaaggaagtctcgccttctgccgcccggtctggggctggggctgtcggttgtcggtggccgtgttcctagacgcccctccctgactctcctggctctttcggggccgacggagactcgccgcggctgcagcgggtccagggcctggagttttctgtgacgtcttaaacatgagccccacacagtgggacttccctgtggagttatgttgccggcctatggcttttgttacacttactggccttgatgtggtgtataatgctgtccatcgagcagtctgggatgctttctgtgccaatcggagagctgaccgggtaccaatttctttcaaagtgctcccaggtgaccatgaatacccaaaatgtagatcaaagagaacttcgtatgagtggtacattcctaaaggaatcctaaagaccggctggatgaataagcatctgaacctcgtgccagcgctggtggtcgtgttctatgaactggactgggacgagcctcagtggaaggaaaagcaatctgagtgtgccaccagggtggagattgtcaggcaaagtttgcaagggagaaacacaaaagttgcagtcgtcctgattcaaaagaaaacacctttacccccaggggaagatatcattgcttctgagcgggctgcagctttatgcaatgtgtgtgagctctcaggcaagtctctgttcgtgctgccccacactgaccaccttgtgggctacattataagattagaaaatgcattttatgagcatgcccagacctattactacactgagatcagaagagtgaaatctcataaggaattcttgaataaaacaacacaccagcttttgtttgttagacatcagttcaaaatagctttcttcagtgagttgaaacaagatacacaaaacgccctgaagaattacaggactgcctataacctcgtacatgaactgagggcccatgaaactaatattctggaaattaagacgatggcaggatttataaactacaagatctgtaggctgtgttttcaacacaataccccactagatgccattgctcagtttcgaaaacacattgacttgtgcaagaagaaaattgggagcgcagagctgtcctttgagcatgctgcgtggatgtcgaaacaattccaggcctttggagatttatttgatgaagccattaagttggggctgacagcaattcaaacacagaaccctggtttctactatcagcaggctgcttactatgcccaggagcgaaaacagcacgcaaaagccctctgtaaccatgacgctgctgtggtgtaccccagtcctgatcccttggaaacaccaacaggtgttcttgacttctatggacagaggccctggagacaaggaatactaagctttgacctctcagaccctgaaaaagagaaagcagggattctcgccattcagctgaaggagagaagtgttgtccactccgagatgataatcactcttctgagcaatgccgttgcacagttcaagaagtacaagtgtccacggatgaagagccacctcatggttcagatgggagaggagtattattatgcgaaggactataccaaagctttgaagctgctggactatgtgatgtgtgactaccggagtgaagcatggtggactctcctcacatctatattgacaacagccctgaagtgttcctacctcatggcccagttaaaagattatattacttactctctggaactccttggaagagcttcaactctgaaagatgaccagaaatctcggatagaaaagaacctcatgaatgttttaatgaatgaaagtcctgaccctgaacctgactgtgacgccttagcagtaaagactgctcagaagctgtgggcagaccgggtctctctggctggcagcaatgttttcacaataggcgtacaggacttcgtgccatttgtgcagtgcaaagccaagttccatgctcccagttttcacgtggatgttcctgtccagtttgatgtttatctgaaggccgactgcccacaccccattaggttttccaagctctgtgtcagctttaataatcagggttacaaccagttctgtgtattggaggaagcatcaaaggcaagtgaagtcttagaaaatctgactcaaggaaagatgtgcttagttcctggcaaaacaagaaaattgttatttaaatttgttgccaaaactgaagatgtgggaaagaaaatagagatcacctctgtggatctgtttctgggcagcgagtcaggcaggtgtgtggttttgagctggcaaggaggaggaggggatgctgcttcctcccaggaagccctgcaggctgcaaggtctttcaagaggcggccaaagcttccggacgatgaggttcactgggacagcatcatagtccaggcaagcacaatgatcatttccagagttccaaacatttctgtacatctgcgacatgagcctcctgctctaatgaatgagatgtattgtttggttgtaactgttcaatcccaggaaaagtcccaaatcagggacgtgaagctcactgctggcctaaagccagggcaggatgccaacctgactcagaagacccatgtgacacttcacggagcagagctgtgtgatgagtcctacccagccttactcaccgacattcctgtaggagacttaaacccaggggagcagctggagaaaacagtgtatgttcgctgtggaacagtgggttccagaatgttccttgtgtatgtttcttacctgatcaatacaactgttgaaggaaaaggaattatgtgcaagtgtcacaaggatgaaacagtgacaatagaaactgtctttccatttgatgtcgcagtcagatttgtttccacaaagtttgagcacctggaaagagtctatgcagatatcccctttttgttgatgacggatattttaagtgcctcaccttgggccctcacaatcgtgtccagtgagctacagcttgctccgtctatggctgcaatggatcatctggagtcccaaatagacaaagttgtcttacagacaggagagagcgctagtgagtgcttctgtcttcgctgcccatctgctgggaaccttgaaggtggagtggcaacaggacattacattatctcctggaagaggtcctcaggcatggaaaacatccccgccatcagcaccatcatcacactgcctcacgtgattgttgaaaacatccctctccatgtgaacgcagacctgccctcgtttggacgagtcagagagtcgttacctgtcaggtatcacctacagaataagaccgacttggttcaagatgtggaaatttctgtggagcccagtgatgccttcatgttctcaggcctcaaacagatccgattacgtattctacctggcaccaaacaggagatgctatataatttctatcctctgatggctgggtaccaacagctaccatcgctcaacatcaacctgctgaggtttcccaacttcaccaaccagctgctcagacgcttcataccaaccagcatttttgtgaagccacagggtcgactcttggaggacacctccatcgctgctgcatgatgtccaggaccagctcttggtgttcttacggaggagtcaagagagtacccgggaggtgtactgtgactgtagctttgttcgtggtgaaaagttaatcctgcctgttttttaatggacataatatcagctcttcagagaactcatggttaaaatattgaggaaatcaacttctctagttttactaataaagtttgaaatgtgtcagtgtgatgtgaaaggtgtcaggtcatcattgctgttagaagtcctttcatggttagcacaatgtgccttgacatacagcatcagtagaacagagaccaagtgtggctgacagaggagacacaactcatccgggtctgcctgcaagtgacccaccccataagtcccctgtgtgcttagcgcatacacagcaagtagcacaggtctggctgaaggacagacctttaggggaggggcttcattagagcagttgaaaggtgtaagagttttacttactgttggaaagtttcagactacgacccacacatgcttttgtgtgcatcctgagaggacctgatgataggcttaattagtaaacgaaaagtctgtgagaatgaaacattggagtgttcagtcccattacgtcacttcctaagggcgatcgatttagaatgacctttaagttcatgtaaatggaaacagatcatatggtgaacattttctttgtaaaatatcttaatttaaaactacataatttcttggaaatttgtactatgcagactgcgggcatattgtaaaaaggaaatagtgatgtaaataaaatatgttctctttca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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