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Previous release (v1)
2026-10-05 18:47:10, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS NM_001143858 6785 bp mRNA linear ROD 07-MAY-2024
DEFINITION Rattus norvegicus dedicator of cyto-kinesis 1 (Dock1), mRNA.
ACCESSION NM_001143858 XM_219424
VERSION NM_001143858.1
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 6785)
AUTHORS Ubba,V., Soni,U.K., Chadchan,S., Maurya,V.K., Kumar,V., Maurya,R.,
Chaturvedi,H., Singh,R., Dwivedi,A. and Jha,R.K.
TITLE RHOG-DOCK1-RAC1 Signaling Axis Is Perturbed in DHEA-Induced
Polycystic Ovary in Rat Model
JOURNAL Reprod Sci 24 (5), 738-752 (2017)
PUBMED 27662902
REMARK GeneRIF: RHOG can mediate signaling through downstream effectors
DOCK1 and RAC1 during ovarian follicular development (theca and
granulosa cells and oocyte), but dehydroepiandrosterone
downregulated them in the polycystic ovarian syndrome ovary.
REFERENCE 2 (bases 1 to 6785)
AUTHORS Nagamachi,A., Matsui,H., Asou,H., Ozaki,Y., Aki,D., Kanai,A.,
Takubo,K., Suda,T., Nakamura,T., Wolff,L., Honda,H. and Inaba,T.
TITLE Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
causes myeloid malignancies in mice mimicking human diseases with
monosomy 7
JOURNAL Cancer Cell 24 (3), 305-317 (2013)
PUBMED 24029230
REFERENCE 3 (bases 1 to 6785)
AUTHORS Liu,X.L., Li,G., Wang,Z.H., Zhao,W.J. and Wang,L.P.
TITLE Increased expression of Dock180 protein in the noninfarcted
myocardium in rats
JOURNAL J Chin Med Assoc 76 (3), 164-168 (2013)
PUBMED 23497970
REMARK GeneRIF: Dock180 protein is expressed in the myocardium in rats.
Furthermore, its expression is significantly increased in the
noninfarcted myocardium of the peri-infarct zones.
REFERENCE 4 (bases 1 to 6785)
AUTHORS Yan,A., Li,G., Zhang,X., Zhu,B. and Linghu,H.
TITLE Pro-survival effect of Dock180 overexpression on rat-derived H9C2
cardiomyocytes
JOURNAL Med Sci Monit Basic Res 19, 12-19 (2013)
PUBMED 23314417
REMARK GeneRIF: Dock180 could act as a pro-survival molecule in H9C2
cardiomyocytes via activation of its downstream pro-survival
signaling molecule, AKT.
Publication Status: Online-Only
REFERENCE 5 (bases 1 to 6785)
AUTHORS Kim,J.Y., Oh,M.H., Bernard,L.P., Macara,I.G. and Zhang,H.
TITLE The RhoG/ELMO1/Dock180 signaling module is required for spine
morphogenesis in hippocampal neurons
JOURNAL J Biol Chem 286 (43), 37615-37624 (2011)
PUBMED 21900250
REMARK GeneRIF: The RhoG/ELMO1/Dock180 signaling module is required for
spine morphogenesis in hippocampal neurons.
REFERENCE 6 (bases 1 to 6785)
AUTHORS Sanders,M.A., Ampasala,D. and Basson,M.D.
TITLE DOCK5 and DOCK1 regulate Caco-2 intestinal epithelial cell
spreading and migration on collagen IV
JOURNAL J Biol Chem 284 (1), 27-35 (2009)
PUBMED 19004829
REFERENCE 7 (bases 1 to 6785)
AUTHORS Kobashigawa,Y., Sakai,M., Naito,M., Yokochi,M., Kumeta,H.,
Makino,Y., Ogura,K., Tanaka,S. and Inagaki,F.
TITLE Structural basis for the transforming activity of human
cancer-related signaling adaptor protein CRK
JOURNAL Nat Struct Mol Biol 14 (6), 503-510 (2007)
PUBMED 17515907
REFERENCE 8 (bases 1 to 6785)
AUTHORS Pratt,S.J., Epple,H., Ward,M., Feng,Y., Braga,V.M. and
Longmore,G.D.
TITLE The LIM protein Ajuba influences p130Cas localization and Rac1
activity during cell migration
JOURNAL J Cell Biol 168 (5), 813-824 (2005)
PUBMED 15728191
REFERENCE 9 (bases 1 to 6785)
AUTHORS Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
TITLE Gene and alternative splicing annotation with AIR
JOURNAL Genome Res 15 (1), 54-66 (2005)
PUBMED 15632090
REFERENCE 10 (bases 1 to 6785)
AUTHORS Brugnera,E., Haney,L., Grimsley,C., Lu,M., Walk,S.F.,
Tosello-Trampont,A.C., Macara,I.G., Madhani,H., Fink,G.R. and
Ravichandran,K.S.
TITLE Unconventional Rac-GEF activity is mediated through the
Dock180-ELMO complex
JOURNAL Nat Cell Biol 4 (8), 574-582 (2002)
PUBMED 12134158
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from
JAXUCZ010000001.1.
On Jan 8, 2009 this sequence version replaced XM_219424.4.
##Evidence-Data-START##
Transcript exon combination :: SRR26643429.3973.1,
SRR26643299.4894.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA5760383, SAMEA5760389
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on conservation, expression
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-164 JAXUCZ010000001.1 198897045-198897208
165-248 JAXUCZ010000001.1 198953144-198953227
249-289 JAXUCZ010000001.1 198959478-198959518
290-345 JAXUCZ010000001.1 198962523-198962578
346-442 JAXUCZ010000001.1 198965992-198966088
443-591 JAXUCZ010000001.1 198969587-198969735
592-727 JAXUCZ010000001.1 198972748-198972883
728-885 JAXUCZ010000001.1 198973504-198973661
886-967 JAXUCZ010000001.1 198974973-198975054
968-1103 JAXUCZ010000001.1 198975446-198975581
1104-1176 JAXUCZ010000001.1 198996908-198996980
1177-1256 JAXUCZ010000001.1 199000423-199000502
1257-1382 JAXUCZ010000001.1 199004561-199004686
1383-1507 JAXUCZ010000001.1 199008394-199008518
1508-1606 JAXUCZ010000001.1 199009767-199009865
1607-1679 JAXUCZ010000001.1 199010742-199010814
1680-1783 JAXUCZ010000001.1 199015998-199016101
1784-1967 JAXUCZ010000001.1 199016723-199016906
1968-2065 JAXUCZ010000001.1 199021688-199021785
2066-2155 JAXUCZ010000001.1 199026346-199026435
2156-2256 JAXUCZ010000001.1 199026759-199026859
2257-2391 JAXUCZ010000001.1 199033664-199033798
2392-2500 JAXUCZ010000001.1 199050674-199050782
2501-2571 JAXUCZ010000001.1 199096572-199096642
2572-2678 JAXUCZ010000001.1 199099385-199099491
2679-2806 JAXUCZ010000001.1 199119912-199120039
2807-2902 JAXUCZ010000001.1 199122090-199122185
2903-3004 JAXUCZ010000001.1 199228523-199228624
3005-3099 JAXUCZ010000001.1 199235351-199235445
3100-3178 JAXUCZ010000001.1 199315390-199315468
3179-3279 JAXUCZ010000001.1 199319649-199319749
3280-3338 JAXUCZ010000001.1 199328905-199328963
3339-3487 JAXUCZ010000001.1 199337595-199337743
3488-3573 JAXUCZ010000001.1 199347058-199347143
3574-3730 JAXUCZ010000001.1 199347328-199347484
3731-3771 JAXUCZ010000001.1 199352380-199352420
3772-3862 JAXUCZ010000001.1 199353774-199353864
3863-3982 JAXUCZ010000001.1 199356898-199357017
3983-4072 JAXUCZ010000001.1 199372998-199373087
4073-4177 JAXUCZ010000001.1 199373844-199373948
4178-4319 JAXUCZ010000001.1 199378266-199378407
4320-4398 JAXUCZ010000001.1 199378530-199378608
4399-4483 JAXUCZ010000001.1 199380172-199380256
4484-4570 JAXUCZ010000001.1 199384135-199384221
4571-4747 JAXUCZ010000001.1 199385795-199385971
4748-4831 JAXUCZ010000001.1 199386812-199386895
4832-4969 JAXUCZ010000001.1 199391921-199392058
4970-5115 JAXUCZ010000001.1 199398144-199398289
5116-5314 JAXUCZ010000001.1 199403288-199403486
5315-5468 JAXUCZ010000001.1 199407050-199407203
5469-5617 JAXUCZ010000001.1 199408326-199408474
5618-6785 JAXUCZ010000001.1 199412469-199413636
FEATURES Location/Qualifiers
source 1..6785
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="1"
/map="1q41"
gene 1..6785
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="dedicator of cyto-kinesis 1"
/db_xref="GeneID:309081"
/db_xref="RGD:1566072"
exon 1..164
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
misc_feature 41..43
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="upstream in-frame stop codon"
CDS 119..5713
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="dedicator of cytokinesis protein 1-like"
/codon_start=1
/product="dedicator of cytokinesis protein 1"
/protein_id="NP_001137330.1"
/db_xref="GeneID:309081"
/db_xref="RGD:1566072"
/translation="
MTRWVPTKREEKYGVAFYNYDARGADELSLQIGDTVHILETYEGWYRGYTLRKKSKKGIFPASYIHLKEAIVEGKGQHETVIPGDLPLIQEVTTTLREWSTIWRQLYVQDNREMFRSVRHMIYDLIEWRSQILSGTLPQDELKELKKKVTAKIDYGNRILDLDLVVRDEDGNILDPELTSTISLFRAHEVASKQVEERLQEEKSQKQNMDINRQAKFAATPSLALFVNLKNVVCKIGEDAEVLMSLYDPVESKFISENYLVRWSSSGLPKDIDRLHNLRAVFTDLGSKDLKREKISFVCQIVRVGRMELRDSNTRKLTSGLRRPFGVAVMDVTDIINGKVDDEDKQHFIPFQPVAGENDFLQTVINKVIAAKEVNHKGQGLWVTLKLLPGDIHQIRKEFPHLVDRTTAVARKTGFPEIIMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETLKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRYDGTTLRDGEHDLIVYKAEAKKLEDAATYLSLPSTKGELEEKGHSATGKGMQSLGSCTISKDSFQISTLVCSTKLTQNVDLLGLLKWRSNTNLLQQNLRQLMKVDGGEVVKFLQDTLDALFNIMMENSESETFDTLVFDALVFIIGLIADRKFQHFNPVLETYIKKHFSATLAYTKLTKVLRTYVASAEKPGINEQLYKAIKALEYIFKFIVRSRVLFNQLYENKGEADFVESLLQLFRSINDMMSSMSELTVRVKGAALKYLPTIVNDVKLVFDPKELSKMFTEFILNVPVGLLTVQKLYCLIEIVHSDLFTQHDCREILLPMMTDQLKYHLERQEDLEACCQLLSNILEVLYRKDVGPTQRHVQIIMEELLRTVNRTVISMGRDSELIGNFVACMTAILRQMEDFHYAHLIKTFGKMRTDVVDFLMETFIMFKNLIGKNVYPFDWVIMNTMQNKVFLRAINQYADMLNKKFLDQANFELQLWNNYFHLAVAFLTQESLQLENFSSAKRAKILNKYGDMRRQIGFEIRDMWYNLGQHKIKFIPEMVGPILEMTLIPETELRKATLPIFFDMMQCEFHSTRSFQMFENEIITKLDHEVEGGRGDEQYKVLFDKILLEHCRKHKYLAKTGETFVKLVVRLMERLLDYRTIMHDENKDNRMSCTVNVLNFYKEIEREEMYIRYLYKLCDLHKECDNYTEAAYTLLLHAKLLKWSEDACAAHLIQRDGFQATTQGQLKEQLYQEIIHYFDKGKMWEEAIALGKELAEQYETELFDYEQLSELLKKQAQFYENIVKVIRPKPDYFAVGYYGQGFPSFLRGKVFIYRGKEYERREDFEARLLTQFPNAEKMKTTSPPGDDIKTSPGQYIQCFTVKPKLDLPPKFHRPVSEQIVSFYRVNEVQRFEYSRPIRKGEKNPDNEFANMWIERTIYTTAYKLPGILRWFEVKSVFMVEISPLENAIETMQLTNDKISSMIQQHLDDPGLPINPLSMLLNGIVDPAVMGGFANYEKAFFTDRYLQEHPEAHGQIEKLKDLIAWQIPFLAEGIRIHGDKVTEALRPFHERMEACFKQLKEKVEKQYGVRTMPSGLDDRRGSRPRSMVRSFTMPSSSRPLSVASVSSFSSDSTPSRPGSDGFALEPLLPKKMHSRSQDKLDKDDPDKEKKDKKKEKRNSKHQEIFDKEFKPADSSLQQSEAVILSETISPLRPQRPKSQVINVIGSERRFSVSPASPCSQPTPPPVTPRAKLSFSIQPNLELNGMMGMDVADVPPPLPLKGNMADYGNLMENQDLMGSPTSPPPPPQRQQPPPLPSKTPPPPPPKTTRKQTSVDSGIVQ"
misc_feature 155..322
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="Src Homology 3 domain of Class A Dedicator of
Cytokinesis proteins 1 and 5; Region: SH3_DOCK1_5_A;
cd12051"
/db_xref="CDD:212984"
misc_feature order(161..175,194..196,209..217,221..223,233..238,
248..253,257..259,281..283,287..289,293..295,299..301,
305..310,314..316,320..322)
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="ELMO interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212984"
misc_feature order(170..172,176..178,185..187,197..199,248..253,
299..301,305..310)
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="peptide ligand binding site [polypeptide binding];
other site"
/db_xref="CDD:212984"
misc_feature 344..1366
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="DOCK N-terminus; Region: DOCK_N; pfam16172"
/db_xref="CDD:465040"
misc_feature 1388..1975
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="C2 domains found in Dedicator Of CytoKinesis (Dock)
class A proteins; Region: C2_Dock-A; cd08694"
/db_xref="CDD:176076"
misc_feature 3758..4954
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="Dock Homology Region 2, a GEF domain, of Dedicator
of Cytokinesis proteins; Region: DHR2_DOCK; cl06123"
/db_xref="CDD:471388"
misc_feature order(4010..4012,4043..4045,4049..4054,4058..4063,
4070..4075,4079..4084,4091..4096)
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:212566"
misc_feature order(4127..4129,4133..4135,4205..4207,4214..4225,
4229..4234,4271..4279,4328..4336,4433..4444,4475..4480,
4487..4489,4493..4495,4604..4609,4616..4618,4676..4681,
4685..4690,4697..4705,4712..4720,4727..4732,4739..4741,
4829..4831,4892..4897,4904..4906)
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="Rac/Cdc42 binding site [polypeptide binding]; other
site"
/db_xref="CDD:212566"
misc_feature order(4712..4720,4727..4729)
/gene="Dock1"
/gene_synonym="RGD1566072"
/note="nucleotide sensor; other site"
/db_xref="CDD:212566"
exon 165..248
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 249..289
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 290..345
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 346..442
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 443..591
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 592..727
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 728..885
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 886..967
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 968..1103
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1104..1176
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1177..1256
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1257..1382
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1383..1507
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1508..1606
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1607..1679
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1680..1783
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1784..1967
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 1968..2065
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2066..2155
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2156..2256
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2257..2391
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2392..2500
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2501..2571
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2572..2678
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2679..2806
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2807..2902
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 2903..3004
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3005..3099
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3100..3178
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3179..3279
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3280..3338
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3339..3487
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3488..3573
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3574..3730
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3731..3771
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3772..3862
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3863..3982
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 3983..4072
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4073..4177
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4178..4319
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4320..4398
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4399..4483
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4484..4570
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4571..4747
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4748..4831
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4832..4969
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 4970..5115
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 5116..5314
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 5315..5468
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 5469..5617
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
exon 5618..6785
/gene="Dock1"
/gene_synonym="RGD1566072"
/inference="alignment:Splign:2.1.0"
ORIGIN
ccatcctgtcgcggcggggaaggaatggaagatggcggcctaggcgcacagtttcctgcccgagcagcggcggcggcagcggcagcggcggctccagtgggctgcggccagcgccaccatgacgcgctgggtccccaccaaacgagaggagaagtacggcgtggctttttataactacgatgccaggggagctgatgaattgtccttacaaataggagacacggtgcacatcctagaaacttatgaagggtggtacagaggctacaccttaaggaaaaagtctaaaaagggtatatttcctgcttcgtatattcatcttaaagaagccattgttgaaggaaaagggcagcatgaaactgtcatccccggggacctccccctcatacaggaagtcaccacaacgctccgagagtggtctaccatctggagacaactttatgtgcaagataatagggagatgtttcgaagtgttcggcacatgatctatgaccttattgagtggcggtcgcagattctttctggaactctgccccaggatgagctcaaagagctgaagaagaaggtcacagccaaaatcgattatggaaacagaattcttgatttggacttggtggtgagggatgaagatgggaacattttggatccggaactaactagcaccatcagtctcttccgagcacatgaagttgcttctaaacaagtagaagagagactgcaagaggagaaatctcaaaaacagaatatggatatcaacagacaagccaagttcgcagccaccccatctctggccttgtttgttaacctcaaaaatgtggtttgtaaaataggagaagatgccgaagtcctcatgtctctttatgaccctgtggagtccaaattcatcagtgagaactacctggtccgctggtcaagttcaggattaccaaaagacattgataggttacataacttgcgtgcggtgtttacggatctggggagcaaagacctgaaaagggagaaaattagtttcgtctgccagattgtccgagttggtcgtatggagctgagggacagcaacacgaggaaactgacttcggggctccggcgaccttttggcgtggctgtgatggacgtaacagacatcataaacgggaaagtggacgatgaagataaacagcacttcatccccttccagccggtggcaggggagaatgacttccttcaaactgtcataaacaaagtcattgcagccaaagaagtcaaccacaagggacaaggtttgtgggtaaccttgaaattacttcctggagacatccatcagattcggaaggagtttcctcacttggtggacaggaccacagctgtggcccgcaagactgggtttccagagatcatcatgccaggtgatgttcgaaatgatatctatgtgacattagttcaaggggattttgataaaggcagtaaaacaaccgcgaagaatgtggaggtgacggtgtctgtctatgatgaagatgggaagcgattggagcacgtgatcttccccggtgctggcgacgaggccatctctgagtacaaatcagtgatttattaccaagtgaagcagcctcgttggttcgagacccttaaggtggccatccccatcgaggacgtgaaccggagtcaccttcgatttaccttccgccatagatcctctcaggactccaaggataaatctgagaagatcttcgcactggcctttgtgaagctgatgagatatgatgggaccaccctgagagacggggagcatgaccttattgtctacaaggctgaagccaaaaagctggaagacgctgccacatatttgagcctccctagtaccaagggagagttggaagaaaagggccactcagccacaggcaaaggaatgcagagtcttgggagttgcaccatcagtaaagattctttccagatctctacgctggtgtgctccaccaaactgacccagaatgtggacctcctggggctgttgaagtggagatccaacaccaaccttctgcagcagaacttgagacagttgatgaaggtggatggtggcgaagtggtaaagttcctgcaggacaccttggatgccctcttcaacatcatgatggagaactccgagagtgagacgtttgataccttggtgtttgatgcgctggtctttatcattggactaatcgcggataggaagtttcagcattttaatcctgttttggagacttacattaagaaacacttcagtgcgacattagcctacacgaaactgaccaaggtgttaaggacttatgtggccagcgctgaaaaaccgggaatcaacgagcagctgtacaaagccataaaagccttggagtacatcttcaagttcatagtgcgctcacgggtactgttcaaccagctgtatgaaaacaagggggaggccgacttcgtggagtccttgttgcaactgttccggtccatcaacgacatgatgagcagcatgtcggagctcacagtcagggtgaagggggcagcattgaagtacttgccaacaattgtcaatgatgtgaagttggtgtttgatcccaaagagctcagtaaaatgttcacggaattcatcttgaatgttcctgtgggcttgctgactgtccagaagctctactgcctgattgagattgttcacagtgatctcttcacacagcatgactgcagagagatcctgctccccatgatgacggatcagctcaagtaccacctagagaggcaggaggatctggaggcatgctgccagctgcttagcaacatcctggaggtgctataccggaaagatgtgggcccgactcagagacacgtccagatcatcatggaggagcttctcaggactgtgaacaggacggtcatttccatggggcgggattccgaactcattgggaactttgtggcttgcatgacagctattttacggcagatggaagacttccattatgcacacctgatcaagaccttcgggaaaatgaggacagacgtcgtggattttctgatggagacattcatcatgtttaagaacctcatcgggaagaatgtctacccctttgactgggtgataatgaacacgatgcagaacaaagttttcctgcgggcgattaatcagtatgcagatatgctgaacaagaaatttctggatcaagccaactttgagctgcagctgtggaacaattactttcacctggccgtggctttcctcactcaagagtccctgcaactggagaatttttcaagtgctaagagagccaaaatccttaacaagtatggagacatgaggaggcagattggctttgagatcagagacatgtggtacaacttgggtcaacacaagataaaattcatcccagaaatggttggccctatattggaaatgacattgattcctgagacagaacttcgaaaagccacccttcccatcttcttcgacatgatgcagtgtgaattccactccacccggagcttccaaatgtttgaaaatgagatcatcactaagctggatcatgaagtggaaggaggcagaggagacgagcaatacaaagtgttatttgataaaatcctcctggagcactgcaggaagcataaatacctggccaagacaggagaaacttttgtgaagctcgtggtgcggttgatggagagactcctggactacaggaccatcatgcacgacgaaaacaaagacaatcgtatgagctgcacagtcaacgtgctgaatttctacaaagagattgaaagagaagagatgtatataaggtacttgtataagctctgcgacctgcacaaagagtgtgacaactacacagaggcggcttacaccttgcttctgcatgcgaagcttctaaagtggtcagaggatgcgtgtgcagctcacctcattcagcgggacgggttccaggcgacaacacagggacagctgaaagaacagctctaccaagaaatcatccactattttgacaaaggcaagatgtgggaggaggccatcgccctgggcaaggaacttgcagagcagtacgaaacggagttgtttgattatgagcagctgagtgagttgctgaaaaaacaggcacaattttatgagaacatcgtcaaggtgataagacccaagccggactattttgctgttggctactatgggcaaggcttcccttcattccttcggggaaaagtgttcatttaccgaggaaaagaatacgagcgacgggaagattttgaagctcggctattaactcagtttccaaatgctgagaaaatgaagacgacatctccacccggcgatgacattaagacttctccaggccagtacattcagtgcttcacagtgaagcccaagctagatttgccccctaagtttcaccggccagtgtctgaacagattgtcagtttttacagggtgaatgaggtccagcgatttgaatattcacggcccatccggaaaggagaaaaaaacccagacaatgaatttgcgaatatgtggatcgagagaaccatctacaccacagcctataaactgccgggaattttaaggtggtttgaagtcaaatctgtcttcatggtagagatcagtccactggagaatgccatcgagacgatgcagctgaccaatgacaagattagcagcatgatccagcagcacctggatgacccaggcctgcctatcaaccctctgtccatgctcctgaatggcattgtggatcctgctgtcatgggaggctttgccaattatgagaaggctttcttcacagaccgatacctgcaggagcatcctgaggcccatgggcagatcgagaagctcaaggacctgatagcctggcagattccatttttggctgaagggatcaggattcatggagacaaagtcacagaggccctgaggccattccatgagcgcatggaagcctgtttcaagcagctgaaggaaaaagtggaaaagcaatatggcgtcaggaccatgccctcaggcttggatgacaggagaggcagtcgtcctcggtccatggtgcggtccttcacaatgccatcatcctctcggccactgtcagtggcttctgtctcttctttctcctctgacagcaccccttcaaggccaggctctgatggatttgctctcgagcctctgctgccgaagaagatgcactccaggtcccaggacaagctagacaaggacgatccagataaagagaagaaggacaagaagaaggagaaaaggaacagcaaacaccaagagatatttgataaggaattcaagcctgctgacagctccctgcagcagtctgaggctgtgatcctgtctgaaacgataagtcccctgcgaccccaaagacccaagagccaggtgatcaatgtcattggaagcgaaagacgcttctctgtgtctccagcttcaccgtgctcccagccgacaccccctccagtcacaccaagagccaagctcagcttcagcattcagcccaatctggagctgaatggcatgatggggatggatgtggccgatgtcccaccccctctgcccctcaaaggcaacatggcagattatggaaatctgatggaaaaccaggatttgatgggctcacccacatctcctcctcctcccccacagcggcaacagccacctccactgcccagcaaaacaccacctcctccccctccgaagacgacccgaaagcagacctcagtggactctgggatcgtgcagtgaatcctgggaggaggtggctatcctcctgcttctcttctacatctgctgtgcctgccgattacctcctccgggccctgggatgcttcacctcagagtgattggctttgcttggaaaggggtccgttctagccatgggaccagaggactgaagtatctcagagcacagtgggaatggagccaagtcagacacagtctggattgtttttttggggttgggaatccaccatgtcatcctttcagatagcctcagtcttgccctgacactctttcctgttgtgccaaatgacttacattcatttgcttggccgatgtgagttggccgatgtggagggatgagaccaacaccctacccctactcccgtgagaagctatgcagtaaccttgtaaggatcctcaggctgcctctgtagcccagaccctagctcacccccaagggctggctgctcaaccctatccttgcgtggggtggagtgtcacttcagccgacatcaagcagctaagtgtatcccttcagtgaagatcttgatttcccttggcataatttaaagtagggctatctctcggttactaaagagatattaatatatgtagtagagacaccattatggatactggatcaaatggaaaatgattatgagcataggaaagtgagttttcattctttttaaaatacgagcccatacaccaccagaggtggtttcccttgggtggcttctctgtgtgtacagaatatttgtatatacggtggttctcagagctccatccggtgagtgtctgtcccccttgcttcctccagtgggcctctgaaaaccaggtccagtgtgtcctcttcacgtttaactgttggaaatacttgttttctaaatcccacaaaaattgttttccagattttcaaggtctgaaaatgttggtggacaatgaatcttttgtttaaaaaactaactttgtataacctaatattttatttgatcatctatatttttttattcactctgatcacgatactgtttgttctaggagagttcaaagttaatcactgacgaatgaaaaataaatgttatttaaaaaggac
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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