2024-04-20 21:29:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001113740 2462 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus septin 7 (Septin7), transcript variant 2, mRNA. ACCESSION NM_001113740 VERSION NM_001113740.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2462) AUTHORS Yadav S, Oses-Prieto JA, Peters CJ, Zhou J, Pleasure SJ, Burlingame AL, Jan LY and Jan YN. TITLE TAOK2 Kinase Mediates PSD95 Stability and Dendritic Spine Maturation through Septin7 Phosphorylation JOURNAL Neuron 93 (2), 379-393 (2017) PUBMED 28065648 REFERENCE 2 (bases 1 to 2462) AUTHORS Kuo YC, Shen YR, Chen HI, Lin YH, Wang YY, Chen YR, Wang CY and Kuo PL. TITLE SEPT12 orchestrates the formation of mammalian sperm annulus by organizing core octameric complexes with other SEPT proteins JOURNAL J Cell Sci 128 (5), 923-934 (2015) PUBMED 25588830 REFERENCE 3 (bases 1 to 2462) AUTHORS Ewers H, Tada T, Petersen JD, Racz B, Sheng M and Choquet D. TITLE A Septin-Dependent Diffusion Barrier at Dendritic Spine Necks JOURNAL PLoS One 9 (12), e113916 (2014) PUBMED 25494357 REMARK GeneRIF: show that diffusion of receptors and bulk membrane, but not cytoplasmic proteins, is slower in spines bearing Sept7 at their neck. Finally, when Sept7 expression was suppressed by RNA interference, membrane molecules explored larger membrane areas. Our findings indicate that Sept7 regulates membrane protein access to spines Publication Status: Online-Only REFERENCE 4 (bases 1 to 2462) AUTHORS Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S and Zaidel-Bar R. TITLE E-cadherin interactome complexity and robustness resolved by quantitative proteomics JOURNAL Sci Signal 7 (354), rs7 (2014) PUBMED 25468996 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 2462) AUTHORS Menon MB, Sawada A, Chaturvedi A, Mishra P, Schuster-Gossler K, Galla M, Schambach A, Gossler A, Forster R, Heuser M, Kotlyarov A, Kinoshita M and Gaestel M. TITLE Genetic deletion of SEPT7 reveals a cell type-specific role of septins in microtubule destabilization for the completion of cytokinesis JOURNAL PLoS Genet 10 (8), e1004558 (2014) PUBMED 25122120 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 2462) AUTHORS Nagata K, Asano T, Nozawa Y and Inagaki M. TITLE Biochemical and cell biological analyses of a mammalian septin complex, Sept7/9b/11 JOURNAL J Biol Chem 279 (53), 55895-55904 (2004) PUBMED 15485874 REMARK GeneRIF: Sept7/9b/11 form a complex that has effects on filament elongation, bundling, or disruption. REFERENCE 7 (bases 1 to 2462) AUTHORS Peng XR, Jia Z, Zhang Y, Ware J and Trimble WS. TITLE The septin CDCrel-1 is dispensable for normal development and neurotransmitter release JOURNAL Mol Cell Biol 22 (1), 378-387 (2002) PUBMED 11739749 REFERENCE 8 (bases 1 to 2462) AUTHORS Kinoshita A, Noda M and Kinoshita M. TITLE Differential localization of septins in the mouse brain JOURNAL J Comp Neurol 428 (2), 223-239 (2000) PUBMED 11064363 REFERENCE 9 (bases 1 to 2462) AUTHORS Walikonis RS, Jensen ON, Mann M, Provance DW Jr, Mercer JA and Kennedy MB. TITLE Identification of proteins in the postsynaptic density fraction by mass spectrometry JOURNAL J Neurosci 20 (11), 4069-4080 (2000) PUBMED 10818142 REFERENCE 10 (bases 1 to 2462) AUTHORS Nakatsuru S, Sudo K and Nakamura Y. TITLE Molecular cloning of a novel human cDNA homologous to CDC10 in Saccharomyces cerevisiae JOURNAL Biochem Biophys Res Commun 202 (1), 82-87 (1994) PUBMED 8037772 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CA512303.1, EV764168.1 and BC128738.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC128738.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-59 CA512303.1 1-59 60-102 EV764168.1 32-74 103-1688 BC128738.1 1-1586 1689-2462 BC128738.1 1588-2361 FEATURES Location/Qualifiers source 1..2462 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="Sprague-Dawley" /db_xref="taxon:10116" /chromosome="8" /map="8q13" gene 1..2462 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="septin 7" /db_xref="GeneID:64551" /db_xref="RGD:620469" exon 1..186 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" CDS 126..1439 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="isoform b is encoded by transcript variant 2; CDC10 protein homolog; CDC10 (cell division cycle 10, S.cerevisiae, homolog)" /codon_start=1 /product="septin-7 isoform b" /protein_id="NP_001107212.1" /db_xref="GeneID:64551" /db_xref="RGD:620469" /translation="
MSVSARSAAAEERSVNCSTMVAQPKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEEEKANWEAQQRILEQQNSSRTLEKNKKKGKIF"
misc_feature 129..131 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="N-acetylserine. /evidence=ECO:0000250|UniProtKB:Q16181; propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); acetylation site" misc_feature 213..215 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="Phosphotyrosine. /evidence=ECO:0000250|UniProtKB:O55131; propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); phosphorylation site" misc_feature 264..1076 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="CDC/Septin GTPase family; Region: CDC_Septin; cd01850" /db_xref="CDD:206649" misc_feature 264..1076 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); Region: Interaction with SEPTIN12. /evidence=ECO:0000250|UniProtKB:Q16181" misc_feature 294..317 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); Region: G1 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01056" misc_feature 294..317 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="G1 box; other site" /db_xref="CDD:206649" misc_feature order(300..320,462..464,471..473,705..710,714..716, 873..878) /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206649" misc_feature 354..356 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); phosphorylation site" misc_feature 387..413 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="Switch I region; other site" /db_xref="CDD:206649" misc_feature 393..395 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="G2 box; other site" /db_xref="CDD:206649" misc_feature 462..473 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); Region: G3 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01056" misc_feature 462..473 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="G3 box; other site" /db_xref="CDD:206649" misc_feature order(468..575,576..605) /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="Switch II region; other site" /db_xref="CDD:206649" misc_feature 705..716 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); Region: G4 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01056" misc_feature 705..716 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="G4 box; other site" /db_xref="CDD:206649" misc_feature 807..809 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="Phosphothreonine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); phosphorylation site" misc_feature 873..881 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="G5 box; other site" /db_xref="CDD:206649" misc_feature 1125..1127 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); phosphorylation site" misc_feature 1134..>1424 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="phosphodiesterase; Provisional; Region: PRK12704" /db_xref="CDD:237177" misc_feature 1242..1244 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="N6-acetyllysine. /evidence=ECO:0000250|UniProtKB:O55131; propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); acetylation site" misc_feature 1257..1436 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1395..1397 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q16181; propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); phosphorylation site" misc_feature 1401..1403 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /note="Phosphothreonine. /evidence=ECO:0000250|UniProtKB:Q16181; propagated from UniProtKB/Swiss-Prot (Q9WVC0.1); phosphorylation site" exon 187..191 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 192..294 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 295..401 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 402..502 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 503..637 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 638..755 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 756..848 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 849..945 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 946..997 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 998..1123 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 1124..1259 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 1260..1399 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" exon 1400..2462 /gene="Septin7" /gene_synonym="Cdc10; Sept7" /inference="alignment:Splign:2.1.0" ORIGIN
ccgcctgctgccgtgtgcgtaagtggggcagtgacgctgggcggctacgctgcggaatcggcgtaggaggttttggagaatccgccggctgcgacgcgccggggctggtcgcggagggggaggggatgtcggtcagtgcgagatccgctgctgctgaggagaggagcgtcaactgcagcaccatggtagctcaaccgaagaaccttgagggctatgtgggatttgccaacctcccaaatcaagtgtacagaaaatcggtgaaaagaggatttgaattcactcttatggtagtaggtgaatctggactgggaaagtcgacattaatcaactcattattcctcacagatttgtattctccagagtatccaggaccttctcatagaatcaaaaagactgttcaggtggagcaatccaaagttttaatcaaagaaggtggcgttcagttgctgctgacgatagttgatactccgggatttggagatgcagtggataatagtaattgctggcagcctgttatcgactacattgatagtaaatttgaagattacttaaatgcagaatctcgagtgaacagacgacagatgcctgataacagggtgcagtgttgtttatacttcattgctccttcaggacatggacttaaaccattggatattgagtttatgaaacgtttgcatgaaaaagtgaatatcattcctttaattgccaaagcagacacacttacaccagaggaatgccaacagtttaaaaagcagataatgaaagaaatccaagaacataaaattaaaatatatgaatttccagaaacggatgatgaagaagagaataagctggttaagaagataaaggaccgtttacctcttgctgtggtgggtagtaatactatcattgaagttaatggcaaaagagtcagaggaaggcagtatccttggggtgtggctgaagttgaaaatggtgagcattgtgattttacaattctaagaaatatgttgatacgaacacacatgcaggacttgaaagatgttaccaataacgtacactatgagaactacagaagcagaaaactagcagcagtgacctacaatggagtagataacaacaagaacaaagggcaacttaccaagagccctctggcgcagatggaggaggagagaagggagcacgtggccaagatgaagaagatggagatggagatggagcaggtgtttgagatgaaggtcaaggaaaaagttcaaaagctgaaggactctgaagccgagctccagcggcgccatgagcaaatgaaaaagaatttagaagcacagcacaaagaattagaggaaaaacgtcgtcagtttgaagaagaaaaagcaaactgggaagctcaacaacgtattttagagcaacagaattcttcaagaaccttggaaaagaacaagaagaaaggcaagatcttttaaactctattgaccaccagttatgtattagttgccaatacgccagcttggacatcagtgtttgttggatccgtttgaccaatttgcaccaattttatccataatgatggatttaacagcatgacaaaaattatttttttgttgttgttctcgaaggagattaagatgccttgaattgtctaggatattgtgtacttagaaattaacagctctaagtacctttctacattttttctttttttttttttttttaaattaaaaagatgtcttcagtttaatgcaagaaaacattttactgttgtacaatcatgttctggtggtttgattgtttacagaatattctaaaataaaaggactctggaaggttttcattgaggataaattgccataatatgatgcaaactatgctactctatgataattataatacagaggttccattcgatgcagcctatacaataatgtatttagtctaacacagtggaccctattttttgacacttccattgtttaaaagtacacatggaaaaaacctatatgcttacagtgcacctagagctttttataacagccttttttgttgtttgttttggattctttaaatatatatatatatatattattctcgtttagtacccctttagccagaatctcattactgcttcatttttgtaataacatttaatttagatattttccatgtattggccctgctaaaatagaagatagcatctttcatatggtagaaaccaacgaggaaactttactttaactccctttttacattttatggtaagtagcaggaggaaaaatgcatttgtagatcatttctaggcaaattgtgaagtttacgaccagcctgtttctacctatactcagtcttgttttactagaaatgggaatcatggcctcttgaagagaaaaaaagtcaccattctgcatttagctgtatctatatattgcatacctgtattttttgtttgtattgtaaaaaaaattcacataataaacaatgttgtgacgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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