2024-03-29 10:16:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001107961 4096 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus diencephalon/mesencephalon homeobox 1 (Dmbx1), mRNA. ACCESSION NM_001107961 XM_001070471 XM_233404 VERSION NM_001107961.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 4096) AUTHORS Fujimoto W, Shiuchi T, Miki T, Minokoshi Y, Takahashi Y, Takeuchi A, Kimura K, Saito M, Iwanaga T and Seino S. TITLE Dmbx1 is essential in agouti-related protein action JOURNAL Proc Natl Acad Sci U S A 104 (39), 15514-15519 (2007) PUBMED 17873059 REFERENCE 2 (bases 1 to 4096) AUTHORS Kimura K, Miki T, Shibasaki T, Zhang Y, Ogawa M, Saisho H, Okuno M, Iwanaga T and Seino S. TITLE Functional analysis of transcriptional repressor Otx3/Dmbx1 JOURNAL FEBS Lett 579 (13), 2926-2932 (2005) PUBMED 15890343 REFERENCE 3 (bases 1 to 4096) AUTHORS Ohtoshi A and Behringer RR. TITLE Neonatal lethality, dwarfism, and abnormal brain development in Dmbx1 mutant mice JOURNAL Mol Cell Biol 24 (17), 7548-7558 (2004) PUBMED 15314164 REFERENCE 4 (bases 1 to 4096) AUTHORS Zhang Y, Miki T, Iwanaga T, Koseki Y, Okuno M, Sunaga Y, Ozaki N, Yano H, Koseki H and Seino S. TITLE Identification, tissue expression, and functional characterization of Otx3, a novel member of the Otx family JOURNAL J Biol Chem 277 (31), 28065-28069 (2002) PUBMED 12055180 COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from JACYVU010000162.1. On Feb 10, 2021 this sequence version replaced NM_001107961.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence based on alignments of orthologous transcripts. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMEA5760383, SAMN12840130 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-166 JACYVU010000162.1 43952174-43952339 c 167-345 JACYVU010000162.1 43948789-43948967 c 346-688 JACYVU010000162.1 43948236-43948578 c 689-4096 JACYVU010000162.1 43943520-43946927 c FEATURES Location/Qualifiers source 1..4096 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="5" /map="5q35" gene 1..4096 /gene="Dmbx1" /gene_synonym="Otx3" /note="diencephalon/mesencephalon homeobox 1" /db_xref="GeneID:313512" /db_xref="RGD:1308265" exon 1..166 /gene="Dmbx1" /gene_synonym="Otx3" /inference="alignment:Splign:2.1.0" CDS 13..1143 /gene="Dmbx1" /gene_synonym="Otx3" /note="orthodenticle homolog 3" /codon_start=1 /product="diencephalon/mesencephalon homeobox protein 1" /protein_id="NP_001101431.1" /db_xref="GeneID:313512" /db_xref="RGD:1308265" /translation="
MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKMETPASNTQLEAEQPPSLPSGDPPAELQLSLSEQSASESAPEDQLDREEDSRAEEPKAEKSPGSESKVLGCKRASPKADSPGSLAITPAAPAGSLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAAVPYLGVNMAPLSSLHCQSYYQSLSAAAAAHQGVWGTPLLPAPPTGLAPASAALNSKTTSIENLRLRAKQHAASLGLDTLPN"
misc_feature order(211..225,229..231,280..282,298..300,337..339, 343..348,355..360,364..372,376..381) /gene="Dmbx1" /gene_synonym="Otx3" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 217..378 /gene="Dmbx1" /gene_synonym="Otx3" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(217..219,226..228,346..348,355..360,367..369) /gene="Dmbx1" /gene_synonym="Otx3" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 167..345 /gene="Dmbx1" /gene_synonym="Otx3" /inference="alignment:Splign:2.1.0" exon 346..688 /gene="Dmbx1" /gene_synonym="Otx3" /inference="alignment:Splign:2.1.0" exon 689..4096 /gene="Dmbx1" /gene_synonym="Otx3" /inference="alignment:Splign:2.1.0" ORIGIN
gcggatgccgctatgcagcactatggggtgaatggctactccctgcatgctatgaactccctcagtgccatgtacaacctgcatcagcaggcggcccagcaggcccagcatgcccctgactaccggccatcagtgcatgcgcttacattggctgagcgcctagctgacatcatcttggaggcccgctatggctcccagcaccgtaaacaacgtcgtagtcgcacggcattcacagcccagcagcttgaggccctggagaagaccttccagaagactcattacccagacgtggtgatgcgtgagaggctggccatgtgcaccaatcttcccgaggcccgcgtgcaggtgtggttcaagaaccgcagagccaagttccgaaagaagcagcgtagcctgcagaaagagcagctccagaagcagaaggaggccgagggctcccacggggaaggcaagatggagactccagcctcaaacacacagctggaagcagagcagcctcccagtctccccagtggtgacccccctgctgaacttcagctgagcctgtccgagcagtcagccagtgaatccgccccggaagaccagctggaccgcgaggaggactcccgggccgaggagcccaaggctgaaaagagtcctggatctgagagcaaggtgctggggtgcaagagggccagccctaaggcagattccccaggcagcctggccataacgcctgcagccccagcgggcagcctccttggtccttcccactcctactcctcgtccccactcagcctcttccgtctacaggagcagttccgccagcacatggcggccaccaacaacctggtgcactactcatcttttgaagtgggcggtcccgcacctgctgcggctgcagctgccgccgccgcggtgccctacctaggggtcaacatggccccactgagctccctacactgtcagtcctattaccaatccctgtcagcagctgctgctgcccaccagggtgtgtgggggaccccattgctgccggcgccccccacaggcctggcacctgcctcagctgccctgaacagtaaaaccacgagcattgaaaaccttcgcttgcgggccaagcagcacgctgcctccctgggactcgatacactccccaattgactgcctggcttccaacccaaccatggtcttaggtgttcccctatctcggtcccatggttattcccagaaggctctccgagttctccaagaactaacttcgagagcccagggatgctggggcctggagtccttccactttgtctcccttcttcagagtcccaaccccaagtgaatcccacacaccctctgcatggccctgcttggaccccatggaggtcaaatggggaggaggtgagcaactggcctcccctccccggtattgcctcctcccctgctccctcactagtaagttgatgtgtggaatgtgatataaatataaatatataaaactatattttcaggcactgcctgccccaggccccctttccctgttctcctcacatctcactgatacccttgcctctgagattctctccagcagttgttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcctctctctctctcctctctttttcttcctcctcctcttgatttctcccacccccctgcagccccattgcctctgtctacatccctgtcccactacctacctggatctaactgctatgccgtcccttggcctttggtgctggctgtattgttgtcctatattctcagtgtttcctttgggcttgtggtgttcggttttagtcactttgtttcttcctgtttctcttctgctctgcttgcctatctcctccctcaacctgaaccctctctaggcaactcttccatcccataccccaagagtcaacaaagccctacttgaagaccctggagcgacaggcaggaggtagcccctagcctcacagcatctcccagatattaggaagggctcacagtcacctttccttctctttccttgcttggagtaccagctcctcagattgcagaggggcatgtggtggcactggaacagcaatctctttgcagggttctagcctcccttatcagcgagtgcgagtgaagccttatggccacacacggtctcaggatttgttgacttccagtgggagtaggagcttctgtctatatgtcactagcacggcaaggtgtgctcttacaggctaccctgctctgcagactccctttcagggtggtgtggcattgggcaagcccagtactttctgggattgtcttgcctggataagatgactaagaagattctgtttatttccaaccacccatagcctctaaccttgtatggcagaggctttggttaggtctaacaatgaccttcattacaaacacccagagaggcccgatgagtaagttagaacattactgttgttttgctgaggaacagtgagtcctgcatacctgaagctctctgtgggtaccgcctcagtttctcagtaaatgcattcctttctgggttagacaatctggatttggtcctattttacttggattccagtgcgagccttgggggctactccatttccatgcccatggtgaggggtgggtaagatgacttggatagatttgtggttatgattcccaagccccacacccacacaatgggttgcctggcatggctggcctacagagccaataatgcccaccttagtaaggacagtctggactagggtaggaggagagggctttggccagtaaaaggtggggaggggaataacctgagacaggagaagcatgacagaaacaggagaatcgagcatgaatgagcctttgaacacgaggtgactggcctcgtgagagtgaagcagaaaacctagaatgcagcccagtagtcccacttccacacagtgagcaccaaaggcagttgagggtttcttaagaaggggtatcttcctgggatctggaatccggaaggcgagtccaaagccttgtgaacatcagaggaggagaaacttggccaaggggatgagaggttagcagatctgaggggttctgtggagggttgggtagggttcagtggcccatggttaccctattgtggttagcttcaagaaattatgtttctgaaatgtctcatctagaattgggcacagggctgaaactgtctttctagtcctgggtgcaaatgaccgattgtcactgggacttgggatctaaccatccccagtctccccaaccctctaagaaggaaggccacccgaggttgtattctgtcacgacacaagcctggtttaccctaggcttttcaaaaagctcttagatctttgtcatttgttctctcatttgctgacccaaacccacaaggccagagaaggaagggaagtcataggtgggtgttatcctcagggatgtcaagttaatttagggtaccagactcaggtactcaaagcagctgaaagagaaggggttgggagagagagataaccatgtcttcttggggtgattagatggcgtaatttttttgaagatattagagggcatgagtatggcaggtgaacccacttgctggacattactgatggaatctctcccaggcctgctggtcactttggacagagaacccaaggactaaacccttacgagcccttcaaggaaaagtcctgctcctctctgctccttcccgtttgaggtctcctttgctctgcttcgtcacttccctagagcatggttcaggggcctgggtccccgcctctatgcagaggctgattggctgtacagaccgctttccaaaccagctgttttgtgaccacttgtgcttagaggttgtaccggcccttggcaaaaaacccaccgtgtattgtgtttatttattctgttagttaaagaagcaaaactcaaacctctcactttcccttgtcctgccccctgcatagcacagcatgatgctctgtcccgtgtatctgtctgtcagtctgttggcctcacttcctgtgactttgtgacctgttctttgtcctaattggctaataaaagagaacctggcagcaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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