2024-05-06 10:41:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001106303 1497 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus H6 family homeobox 2 (Hmx2), mRNA. ACCESSION NM_001106303 XM_001054069 XM_215056 VERSION NM_001106303.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1497) AUTHORS Zheng S, Damoiseaux R, Chen L and Black DL. TITLE A broadly applicable high-throughput screening strategy identifies new regulators of Dlg4 (Psd-95) alternative splicing JOURNAL Genome Res 23 (6), 998-1007 (2013) PUBMED 23636947 REFERENCE 2 (bases 1 to 1497) AUTHORS Wang W, Grimmer JF, Van De Water TR and Lufkin T. TITLE Hmx2 and Hmx3 homeobox genes direct development of the murine inner ear and hypothalamus and can be functionally replaced by Drosophila Hmx JOURNAL Dev Cell 7 (3), 439-453 (2004) PUBMED 15363417 REFERENCE 3 (bases 1 to 1497) AUTHORS Wang W, Chan EK, Baron S, Van de Water T and Lufkin T. TITLE Hmx2 homeobox gene control of murine vestibular morphogenesis JOURNAL Development 128 (24), 5017-5029 (2001) PUBMED 11748138 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473953.1. On or before Oct 4, 2007 this sequence version replaced XM_215056.2, XM_001054069.1. ##Evidence-Data-START## Transcript exon combination :: FM062017.1 [ECO:0000332] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1497 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="1" /map="1q41" gene 1..1497 /gene="Hmx2" /gene_synonym="RGD1565366" /note="H6 family homeobox 2" /db_xref="GeneID:293538" /db_xref="RGD:1565366" exon 1..91 /gene="Hmx2" /gene_synonym="RGD1565366" /inference="alignment:Splign:2.1.0" exon 92..360 /gene="Hmx2" /gene_synonym="RGD1565366" /inference="alignment:Splign:2.1.0" CDS 93..914 /gene="Hmx2" /gene_synonym="RGD1565366" /note="H6 homeo box 2" /codon_start=1 /product="homeobox protein HMX2" /protein_id="NP_001099773.1" /db_xref="GeneID:293538" /db_xref="RGD:1565366" /translation="
MGSKEDVGKGCPAAGGVSSFTIQSILGGGPSEAPREPAGWPARKRSLSVSSEEEEPEEGWKAPACYCPDPHGPKEPSPKHHPPIPFPCLGTPKGSGGAGPAASERTPFLSPSHPDFKEEKERLLPAGSPSPGPERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVGMPLVFRDSSLLRVPVPRSLAFPAPLYYPSSNLSALPLYNLYNKLDY"
misc_feature order(540..554,558..560,609..611,627..629,666..668, 672..677,684..689,693..701,705..710) /gene="Hmx2" /gene_synonym="RGD1565366" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 546..707 /gene="Hmx2" /gene_synonym="RGD1565366" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(546..548,555..557,675..677,684..689,696..698) /gene="Hmx2" /gene_synonym="RGD1565366" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 361..1497 /gene="Hmx2" /gene_synonym="RGD1565366" /inference="alignment:Splign:2.1.0" ORIGIN
ggatatgtccccttggcaggccaaagtcagagaccacacttgcctgggaaactggaagtggagcctgggagaatgagaaggaggtgaaaaggatgggcagcaaggaagatgtggggaagggatgtccggcggccggtggcgtctccagcttcaccatccagtccatcctgggcgggggcccctccgaggcaccgcgggagcccgccgggtggccagccaggaaacgcagcttgtctgtgtcctcggaggaggaggagccggaggaaggctggaaggctccggcttgctactgcccagatccgcacggccccaaggagccaagccctaagcaccatccccccatccctttcccttgcctgggtacccccaagggcagcggaggcgcagggcctgcggcctcggagcgcacgcctttcctttctccttctcacccggactttaaggaagagaaggagaggctcttgcccgcaggctcgccttctccgggcccggagcggccacgggacggcggtgcagagcgccaagccggagcggccaagaagaagacgcgcaccgtcttctcccgcagccaagtgtaccagctcgagtccaccttcgacatgaaacgctaccttagcagctcggagcgcgcttgcctcgcctccagcctgcagctcaccgagacccaggttaagacttggtttcagaatcgccgcaacaagtggaagcgacagctttccgccgagctagaggcggccaacatggcacacgcgtcggcgcagactctcgtgggcatgccgttggtatttcgggacagttcgctactgcgagtgccggtgccacgctctctcgcctttccggctccgctctattaccccagcagcaatctctcggccttaccgctctacaacctgtacaacaagcttgactactgacacgcccgctggctcccggggcgcctctggtcgcctgcagttgcctgcatagtccggcgcggtcggtatccttactggggctccggagcagagcggcgcgtgtccagaaatattaagaaatacaccatgtgtattcgttatgtcttatttatggcctcttccctactttttgggttttttgttttgttttgagtatttatccgcattcctcacaccagagcacctgctttctacacaaaaccaaaccaacacgccacgcgtatgaaactattttggaaggggagattctcgggtagtggtgggaaagggggttttgattggccggtagcaagaaaaaaaacatcagaaaaataccaacaaaaccaggtagtctttctcccatatatacacctgtatatgtatataaatagtgtacaaggacacaatctcagccgagcggagcccactaggacgttggccattgaaccaatcacttctctttattcccttcatcttgaggatgagtaggggtgaaacgaggagagtacagatctgtaaatatttttaaagagaaaaaaaataaaacgttttaaacatggttgct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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