2024-05-04 11:52:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001100890 2724 bp mRNA linear ROD 09-OCT-2023 DEFINITION Rattus norvegicus G-rich RNA sequence binding factor 1 (Grsf1), mRNA. ACCESSION NM_001100890 XM_001073361 XM_223327 VERSION NM_001100890.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2724) AUTHORS Wang J, Lu J, Zhu Y, Huang Q, Gu Q, Tian S, Ge J, Lin X and Sha W. TITLE Guanine-rich RNA sequence binding factor 1 regulates neuronal ferroptosis after spinal cord injury in rats via the GPX4 signaling pathway JOURNAL Brain Res 1818, 148497 (2023) PUBMED 37506966 REMARK GeneRIF: Guanine-rich RNA sequence binding factor 1 regulates neuronal ferroptosis after spinal cord injury in rats via the GPX4 signaling pathway. REFERENCE 2 (bases 1 to 2724) AUTHORS Pietras Z, Wojcik MA, Borowski LS, Szewczyk M, Kulinski TM, Cysewski D, Stepien PP, Dziembowski A and Szczesny RJ. TITLE Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria JOURNAL Nat Commun 9 (1), 2558 (2018) PUBMED 29967381 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2724) AUTHORS Antonicka H and Shoubridge EA. TITLE Mitochondrial RNA Granules Are Centers for Posttranscriptional RNA Processing and Ribosome Biogenesis JOURNAL Cell Rep 10 (6), 920-932 (2015) PUBMED 25683715 REFERENCE 4 (bases 1 to 2724) AUTHORS Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C and Landthaler M. TITLE The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts JOURNAL Mol Cell 46 (5), 674-690 (2012) PUBMED 22681889 REFERENCE 5 (bases 1 to 2724) AUTHORS Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and Hentze MW. TITLE Insights into RNA biology from an atlas of mammalian mRNA-binding proteins JOURNAL Cell 149 (6), 1393-1406 (2012) PUBMED 22658674 REFERENCE 6 (bases 1 to 2724) AUTHORS Lickert H, Cox B, Wehrle C, Taketo MM, Kemler R and Rossant J. TITLE Dissecting Wnt/beta-catenin signaling during gastrulation using RNA interference in mouse embryos JOURNAL Development 132 (11), 2599-2609 (2005) PUBMED 15857914 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CK474968.1, FM050032.1, CK601425.1 and BC103654.1. On or before Dec 20, 2009 this sequence version replaced XM_223327.4, XM_001073361.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-39 CK474968.1 1-39 40-586 FM050032.1 1-547 587-1029 CK601425.1 3-445 1030-2724 BC103654.1 1-1695 FEATURES Location/Qualifiers source 1..2724 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="14" /map="14p22" gene 1..2724 /gene="Grsf1" /note="G-rich RNA sequence binding factor 1" /db_xref="GeneID:305256" /db_xref="RGD:1310858" exon 1..372 /gene="Grsf1" /inference="alignment:Splign:2.1.0" CDS 19..1458 /gene="Grsf1" /codon_start=1 /product="G-rich sequence factor 1" /protein_id="NP_001094360.1" /db_xref="GeneID:305256" /db_xref="RGD:1310858" /translation="
MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGTFPSGVSGRRRLLLLLGAAAAAASQTRGLQLGPAAAGRLAGPVPVRPSAAAAAAASYSALRAPLLPRSLAAAAGPARGYCQESKTTYLEDLPPLPEYELSPSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMVSSPTTKYITEPEVVFEEHEVNEDARPMTAFESEKEIELPKEMSDKLAEAVDFGAVPSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKGK"
misc_feature 460..696 /gene="Grsf1" /note="RNA recognition motif 1 (RRM1) found in G-rich sequence factor 1 (GRSF-1) and similar proteins; Region: RRM1_GRSF1; cd12730" /db_xref="CDD:410129" misc_feature 760..990 /gene="Grsf1" /note="RNA recognition motif 2 (RRM2) found in G-rich sequence factor 1 (GRSF-1) and similar proteins; Region: RRM2_GRSF1; cd12505" /db_xref="CDD:409928" misc_feature 1216..1440 /gene="Grsf1" /note="RNA recognition motif 3 (RRM3) found in G-rich sequence factor 1 (GRSF-1) and similar proteins; Region: RRM3_GRSF1; cd12733" /db_xref="CDD:410132" exon 373..529 /gene="Grsf1" /inference="alignment:Splign:2.1.0" exon 530..685 /gene="Grsf1" /inference="alignment:Splign:2.1.0" exon 686..829 /gene="Grsf1" /inference="alignment:Splign:2.1.0" exon 830..965 /gene="Grsf1" /inference="alignment:Splign:2.1.0" exon 966..1150 /gene="Grsf1" /inference="alignment:Splign:2.1.0" exon 1151..1272 /gene="Grsf1" /inference="alignment:Splign:2.1.0" exon 1273..1408 /gene="Grsf1" /inference="alignment:Splign:2.1.0" exon 1409..1484 /gene="Grsf1" /inference="alignment:Splign:2.1.0" exon 1485..2696 /gene="Grsf1" /inference="alignment:Splign:2.1.0" ORIGIN
gcgccgcctccggagcccatggccgggacgcgctgggtgctaggggcgttgctccggggctgcggctgcaactgcagcagctgccggcgaaccggtgccgcctgcctgcccttctactcggccgccggcactttcccgtccggcgtctctggccgccgccgcctgctgctactcctcggggccgccgcggccgccgcttcgcagacgcggggcctgcagctcgggcctgcggccgccgggagactggcgggtcccgtccctgtccggccctccgccgccgcggcggctgccgcgtcctactcggcgttgcgcgccccgctgcttccgcgatcgctggccgccgccgcgggcccggcgcggggttactgccaggagtccaaaactacctacctggaagacctcccaccactacctgagtacgaactgagcccatccaagttaggagaagaggtggatgatgtttacctcattcgagctcagggtctgccctggtcctgcactgtggaagatgtcctcagctttttctcagactgcagaatccgaaacagtgagaatggaatacatttcctcctgaacagagatggcaaacggaggggcgatgccttgattgaaatggagtccgagcaggatgtacagaaggccttggaaaagcaccggatgtacatggggcagcggtatgtggaagtgtatgaaataaacaacgaagatgtggatgccttaatgaagagcctacaggtcaagcctacgcctgcactcagtgacggtgtggtccgcctgagaggactcccttacagctgcaatgaaaaggacattgtggacttctttgcaggactgaacatagtagacatcacttttgtgatggactatagagggagaagaaaaacaggggaagcctatgtacagtttgaagaaccagaaatggccaaccaagcgcttctgaagcacagggaagagattggtaaccgatacatagagatatttccaagcagaaggaatgaagttcgcacacacgttggatctcataaaggaaagaaaatggtgtcttctcctactaccaaatatataactgaaccagaagtggtgtttgaggaacatgaagttaatgaggacgctcggcccatgacagcttttgaaagtgaaaaagagatagagttgcctaaggagatgtcagacaaacttgcagaggctgttgactttggagctgtgccgtccctgcattttgtccacatgagaggattgcctttccaagccaatgcccaggacatcataaatttctttgccccactgaagcctgtgagaatcaccatggagtacagctccagcggaaaggccactggagaagctgacgtgcactttgatacccatgaggatgctgttgctgccatgctcaaggaccggtcgcatgtccaacataggtatattgagctgttcctaaattcatgtcctaaaggaaaataagacttgaacagaccccagaagataaggatggagcaggaagcacctcgtttgcacatctctggcataaaaagatgagttgattggcagtggctgctggagaaaggatctgtgcgtctcagtgctgtgtctacaccgagaaagatgcggctgggactctgaaataagcctcacatgtacattttcgtctaagcagtggttgagaaagtcgggcctgtgtgttgagttttctgacacagaggccatattacagacgtgagatgatctttccacccagtgctgctcctcagatccttactcctggttgttgcctctgactgagggctctgatacaaagctcatggaataaattaatggtgtatttttaccaagcactcaccaaagcagcaggaggttcagaactttactaagccagtctgattgggtcaaacagttttgctttttttcattttgattttcatttgattacttagggatagaacttttaaaaaatagcaaaccacagattagtgagtgtaagtgaccactcggcagttttgtctttagaaacactttgcctccttaagcctttgacctgaaagcatttgacgttggtgcctgtctgtgtcttggaaacctagacttcacttccttcacgtttttttggacaaatcttaaggctattaggtttgaaatcgtaatgtgacatatcaaagcagtccagactggtaaggacattaatcgcttcacttgaattaaaccagctctagataagggggaaacaatcttaagtctcctcctctgcttttccagtggggtagccatcccatattttagaacaagtaggggtgccttgcttaaataaaactagcatttcatgtataattgtgtgaaggttctatggctagagctgtatttctgtcacattgtggcagcaccttctgctttaatactaaatagcttgttatttaaatattggataaaatggctggcttcaaaaatagtcattaataaacttaactttatgtatacctgtgtagaagaatcaaagtcctgtatattttctttgccttgttcctattctcagggtgacagctgccaccaagagataataagtctcactcttcagattgaattttctgagctttcagaggtggtaacctggaagaaacgtgtattgcttagttcataaccacctgggattaccagctaaggggcaaaattactgtcctgtagacaataaatgaaggtttcaagtcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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