2024-04-20 00:21:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001100174 2861 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus aristaless related homeobox (Arx), mRNA. ACCESSION NM_001100174 XM_001064618 XM_228590 VERSION NM_001100174.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2861) AUTHORS Navik U, Rawat K and Tikoo K. TITLE L-Methionine prevents beta-cell damage by modulating the expression of Arx, MafA and regulation of FOXO1 in type 1 diabetic rats JOURNAL Acta Histochem 124 (1), 151820 (2022) PUBMED 34871948 REMARK GeneRIF: L-Methionine prevents beta-cell damage by modulating the expression of Arx, MafA and regulation of FOXO1 in type 1 diabetic rats. REFERENCE 2 (bases 1 to 2861) AUTHORS Curie A, Nazir T, Brun A, Paulignan Y, Reboul A, Delange K, Cheylus A, Bertrand S, Rochefort F, Bussy G, Marignier S, Lacombe D, Chiron C, Cossee M, Leheup B, Philippe C, Laugel V, De Saint Martin A, Sacco S, Poirier K, Bienvenu T, Souville I, Gilbert-Dussardier B, Bieth E, Kauffmann D, Briot P, de Freminville B, Prieur F, Till M, Rooryck-Thambo C, Mortemousque I, Bobillier-Chaumont I, Toutain A, Touraine R, Sanlaville D, Chelly J, Freeman S, Kong J, Hadjikhani N, Gollub RL, Roy A and des Portes V. TITLE The c.429_452 duplication of the ARX gene: a unique developmental-model of limb kinetic apraxia JOURNAL Orphanet J Rare Dis 9, 25 (2014) PUBMED 24528893 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2861) AUTHORS Poeta L, Fusco F, Drongitis D, Shoubridge C, Manganelli G, Filosa S, Paciolla M, Courtney M, Collombat P, Lioi MB, Gecz J, Ursini MV and Miano MG. TITLE A regulatory path associated with X-linked intellectual disability and epilepsy links KDM5C to the polyalanine expansions in ARX JOURNAL Am J Hum Genet 92 (1), 114-125 (2013) PUBMED 23246292 REFERENCE 4 (bases 1 to 2861) AUTHORS Du A, McCracken KW, Walp ER, Terry NA, Klein TJ, Han A, Wells JM and May CL. TITLE Arx is required for normal enteroendocrine cell development in mice and humans JOURNAL Dev Biol 365 (1), 175-188 (2012) PUBMED 22387004 REFERENCE 5 (bases 1 to 2861) AUTHORS Quille ML, Carat S, Quemener-Redon S, Hirchaud E, Baron D, Benech C, Guihot J, Placet M, Mignen O, Ferec C, Houlgatte R and Friocourt G. TITLE High-throughput analysis of promoter occupancy reveals new targets for Arx, a gene mutated in mental retardation and interneuronopathies JOURNAL PLoS One 6 (9), e25181 (2011) PUBMED 21966449 REFERENCE 6 (bases 1 to 2861) AUTHORS Yoshihara S, Omichi K, Yanazawa M, Kitamura K and Yoshihara Y. TITLE Arx homeobox gene is essential for development of mouse olfactory system JOURNAL Development 132 (4), 751-762 (2005) PUBMED 15677725 REFERENCE 7 (bases 1 to 2861) AUTHORS Poirier K, Van Esch H, Friocourt G, Saillour Y, Bahi N, Backer S, Souil E, Castelnau-Ptakhine L, Beldjord C, Francis F, Bienvenu T and Chelly J. TITLE Neuroanatomical distribution of ARX in brain and its localisation in GABAergic neurons JOURNAL Brain Res Mol Brain Res 122 (1), 35-46 (2004) PUBMED 14992814 REFERENCE 8 (bases 1 to 2861) AUTHORS Kitamura K, Yanazawa M, Sugiyama N, Miura H, Iizuka-Kogo A, Kusaka M, Omichi K, Suzuki R, Kato-Fukui Y, Kamiirisa K, Matsuo M, Kamijo S, Kasahara M, Yoshioka H, Ogata T, Fukuda T, Kondo I, Kato M, Dobyns WB, Yokoyama M and Morohashi K. TITLE Mutation of ARX causes abnormal development of forebrain and testes in mice and X-linked lissencephaly with abnormal genitalia in humans JOURNAL Nat Genet 32 (3), 359-369 (2002) PUBMED 12379852 REFERENCE 9 (bases 1 to 2861) AUTHORS Scheffer IE, Wallace RH, Phillips FL, Hewson P, Reardon K, Parasivam G, Stromme P, Berkovic SF, Gecz J and Mulley JC. TITLE X-linked myoclonic epilepsy with spasticity and intellectual disability: mutation in the homeobox gene ARX JOURNAL Neurology 59 (3), 348-356 (2002) PUBMED 12177367 REFERENCE 10 (bases 1 to 2861) AUTHORS Bienvenu T, Poirier K, Friocourt G, Bahi N, Beaumont D, Fauchereau F, Ben Jeema L, Zemni R, Vinet MC, Francis F, Couvert P, Gomot M, Moraine C, van Bokhoven H, Kalscheuer V, Frints S, Gecz J, Ohzaki K, Chaabouni H, Fryns JP, Desportes V, Beldjord C and Chelly J. TITLE ARX, a novel Prd-class-homeobox gene highly expressed in the telencephalon, is mutated in X-linked mental retardation JOURNAL Hum Mol Genet 11 (8), 981-991 (2002) PUBMED 11971879 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF638804.1. On or before Jul 29, 2007 this sequence version replaced XM_228590.4, XM_001064618.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: EF638804.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760384, SAMEA5760386 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2861 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="W" /db_xref="taxon:10116" /chromosome="X" /map="Xq22" gene 1..2861 /gene="Arx" /gene_synonym="RGD1562672" /note="aristaless related homeobox" /db_xref="GeneID:317268" /db_xref="RGD:1562672" exon 1..392 /gene="Arx" /gene_synonym="RGD1562672" /inference="alignment:Splign:2.1.0" misc_feature 2..4 /gene="Arx" /gene_synonym="RGD1562672" /note="upstream in-frame stop codon" CDS 197..1897 /gene="Arx" /gene_synonym="RGD1562672" /codon_start=1 /product="homeobox protein ARX" /protein_id="NP_001093644.1" /db_xref="GeneID:317268" /db_xref="RGD:1562672" /translation="
MSNQYQEEGCSERPECKSKSPTLLSSYCIDSILGRRSPCKMRLLGAAQSLPAPLASRTDQEKAMQGSPKGSSAPFEAELHLPPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATGTAGPRGEVPPPPPPAARPGERQDSAGAVAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFVPPPPALDELGGPGGVAHPEERLSAASGPGSAPAAGGGTGTEEDEEELLEDEEDEDEEEELLEDDEEELLEDDARALLKEPRRCSVATTGTVAAAAAAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEHAAQLTQLNILPGTSTGKEVC"
misc_feature 197..259 /gene="Arx" /gene_synonym="RGD1562672" /note="propagated from UniProtKB/Swiss-Prot (A6YP92.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 344..433 /gene="Arx" /gene_synonym="RGD1562672" /note="propagated from UniProtKB/Swiss-Prot (A6YP92.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 551..988 /gene="Arx" /gene_synonym="RGD1562672" /note="propagated from UniProtKB/Swiss-Prot (A6YP92.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1052..1153 /gene="Arx" /gene_synonym="RGD1562672" /note="propagated from UniProtKB/Swiss-Prot (A6YP92.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(1193..1207,1211..1213,1262..1264,1280..1282, 1319..1321,1325..1330,1337..1342,1346..1354,1358..1363) /gene="Arx" /gene_synonym="RGD1562672" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1199..1201,1208..1210,1328..1330,1337..1342, 1349..1351) /gene="Arx" /gene_synonym="RGD1562672" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1202..1360 /gene="Arx" /gene_synonym="RGD1562672" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 1784..1840 /gene="Arx" /gene_synonym="RGD1562672" /note="OAR domain; Region: OAR; pfam03826" /db_xref="CDD:427530" misc_feature 1796..1837 /gene="Arx" /gene_synonym="RGD1562672" /note="propagated from UniProtKB/Swiss-Prot (A6YP92.1); Region: OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138" exon 393..1281 /gene="Arx" /gene_synonym="RGD1562672" /inference="alignment:Splign:2.1.0" exon 1282..1327 /gene="Arx" /gene_synonym="RGD1562672" /inference="alignment:Splign:2.1.0" exon 1328..1656 /gene="Arx" /gene_synonym="RGD1562672" /inference="alignment:Splign:2.1.0" exon 1657..2851 /gene="Arx" /gene_synonym="RGD1562672" /inference="alignment:Splign:2.1.0" ORIGIN
ctgagcgcggagaggacgagctccggctgaggtcagagtgggagcccgcatccgaggggggcagaaaggaacaaagatcgcagtaatacctgttataatcagcaatctaacccatccccaacacacactctttcaccctaccggccaggagaggcaggcagaggtccactctgagcccaaggaaaaagctccaaccatgagcaatcagtaccaggaagagggctgctctgagaggcccgagtgcaagagtaaatcgccaactttgctctcctcctactgcatcgacagcatcctgggccggagaagcccgtgcaaaatgaggcttctgggagccgcgcagagcttgcctgccccgctggccagccgtactgaccaagaaaaagccatgcaaggctcccccaagggcagcagcgccccgttcgaggctgagctgcacctgccacccaagctgcggcgcctgtacggcccgggcgggggccgcctcctccagggcgcagcagcggcggcagcggcggcggccgcggcggcggcggcggcagccacggccactggcaccgcaggtccccgtggagaggttcctccaccgccaccgccagcagcacggccaggggagcgtcaggacagcgcgggggccgtggccgccgccgccgccgctgcctgggacacgctcaaaattagccaggcaccgcaggtgagcatcagccgcagcaagtcgtaccgcgagaacggggcgcccttcgtgccaccgccgcccgccctggacgagctgggtggtccggggggcgtcgcgcacccagaggagcgcctcagcgcggccagcggacccggcagtgccccggcggcgggtggtggcacgggcaccgaggaggacgaggaggagctgttggaggatgaggaagatgaagatgaggaagaggagctgctggaggacgacgaggaggagctgctggaagacgatgcccgcgcgctactcaaggagccccggcgctgctctgtggccaccactggcacggtggccgccgccgccgccgccgccgctgccgccgccgccgtggccaccgagggcggggagctgtcgcccaaggaagagctgttgctgcacccggaggacgccgagggcaaggatggtgaggacagcgtgtgcctgtccgccggcagcgactccgaggaggggctcctgaagcgcaaacagaggcgttaccgcaccacgttcaccagttaccagctggaggaactggagcgggctttccagaagacacactaccctgacgtcttcaccagggaggagctggccatgaggctggacctgactgaggcccgagtccaggtgtggttccagaaccgcagggccaagtggcgcaagcgggagaaggctggcgcgcagacccaccccccggggctgccctttcccgggccactctcggctacccaccctctcagcccctacctggacgccagcccctttcccccgcatcacccagcgcttgactcggcctggaccgccgccgctgcagcggctgcagctgccttcccgagcctacctccgcccccgggctctgctagcctgccgcccagcggggcgccgctgggcctgagcactttcctgggagcagccgtgttccggcacccggccttcatcagcccagcatttggcaggctcttttccactatggcccccctgaccagcgcgtcgaccgcggctgcgctcctgagacagcccacacccgcagtggagggcgcagtggcctcgggcgcgctggccgatcccgccaccgctgcggcagacagacgcgcatcgagcatagcggcgctgaggctcaaggctaaggagcacgccgcgcagctcacgcagctcaacatcctcccgggcaccagcacggggaaggaggtgtgctaaaggctgccctccgcccttgcgcccctagggcgcgccccgaaaggtcacctcactcagcaccactcaagaccaaatggaaacagaggaccagctcactcccaagacggcaaagacagagcgcagccgccttcgcagcagcctggaccctggacgcggacaaggcagctcttggcgctaaaggacgtggcacctcttccgttggctgtccatttgcccttgtccctgtccctacccctgccactgccaacgtcactccaactcaaatgtccacgctcccgtttttatcttactgaaaacaagcgggagggtttctccccaatatgcctagtattgaagttttaaaaattaaaagcccaaccttctcttcctccggataccccacttagcttttcttttgaatagcattttggcgctctaagttgatttaagcgcggcccggctagacagacaccagggccagggaagcgaatacgaatctgtaagatagctaacagtgcacttaaaggaaaggggcgtctcgttcttgttctcttctttatcatacaccaaccaaggtttttatatcaaaccaaagggaaatactctgctagaatatggactgttgaagtcaccaaactgtgattattgattctgtacataccattgttattaaaaaaaaaagaacagagctttgtatatttgaaatgttataacgcaattgcactcagcgtggtatggtaaaagtttgtcctcctgtagattcttactgtgttgtagatatggtagggttcctagacaaatatttatgtactcaagccctttatttaacttattaactgtagaggcttcggaaaccttcaagataaaggcaatggtacagtacttttgtgtaatgtgtaattgttatcacttttccttgctatctagtggagaagtgtcacgctcaaaataaaaaaaaatatatgtttaacaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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